EWM28620.1, cds2126 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|585111038|gb|EWM28620.1| (histone-like transcription factor family protein [Nannochloropsis gaditana]) HSP 1 Score: 398.667 bits (1023), Expect = 2.205e-140 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query: 1 MRLYRQIKKASMSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
MRLYRQIKKASMSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP
Sbjct: 1 MRLYRQIKKASMSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|676387383|ref|XP_009036970.1| (hypothetical protein AURANDRAFT_17325, partial [Aureococcus anophagefferens] >gi|323452365|gb|EGB08239.1| hypothetical protein AURANDRAFT_17325, partial [Aureococcus anophagefferens]) HSP 1 Score: 87.8113 bits (216), Expect = 2.136e-19 Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 0
Query: 117 TLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVP 196
+L IP+A++KRIMKLDP+ Q++ DA++++AKATE+F++K + + + A R T+KYEDIAD KN EFL V+P
Sbjct: 1 SLLIPKAAVKRIMKLDPEVNQVANDAVILVAKATEMFLEKFSAEARAQATLRSRTTVKYEDIADTVSGDKNYEFLATVIP 80
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|299469977|emb|CBN79154.1| (histone-like transcription factor family (CBF/NF-Y) [Ectocarpus siliculosus]) HSP 1 Score: 80.1073 bits (196), Expect = 3.992e-15 Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 0
Query: 80 GTPASMKAEEA--------PVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVP 196
GTP++ A A P S+K+ R+ P+P + +P + +KRIMKL +T+ +S++A++++ KA+E+F++KLA + A RKTIKY D++D R N+ FL+ VVP
Sbjct: 106 GTPSASAASGAVKKEGGSQPRSAKRPRDTPLP--------------VGLPPSMVKRIMKLGEETRNISKEALVIVVKASEIFLEKLAARAFDHAEKLGRKTIKYRDVSDVRVEDPNLLFLEAVVP 216
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|560119029|emb|CDJ96319.1| (Transcription factor CBF NF-Y archaeal histone domain containing protein [Haemonchus contortus]) HSP 1 Score: 78.5666 bits (192), Expect = 6.936e-15 Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0
Query: 105 LSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
+S + V E +P + +K+I +LDPD + DA++ + KATELF+ +LAKAS++ AV KRKTI+ +DI A S+ EFLDG + P
Sbjct: 8 ISQEHVQVAELLNCTLPTSRVKKICRLDPDLSMIGSDAVLFITKATELFVAELAKASYTQAVLEKRKTIQTKDIDRAIASKAIYEFLDGALTDWP 102
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|748357569|gb|KIH50123.1| (hypothetical protein ANCDUO_19802 [Ancylostoma duodenale]) HSP 1 Score: 74.7146 bits (182), Expect = 1.952e-13 Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 0
Query: 119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
++P + +K+I +LDPD + DA++ + KATELF+ +LAKAS++ AV KRKTI+ +DI A S+ EFLD + P
Sbjct: 20 SLPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQAKDIEKAIASKHMFEFLDDALNDWP 100
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|597879677|gb|EYC29042.1| (hypothetical protein Y032_0007g3556 [Ancylostoma ceylanicum]) HSP 1 Score: 74.3294 bits (181), Expect = 3.160e-13 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 0
Query: 118 LAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
++P + +K+I +LDPD + DA++ + KATELF+ +LAKAS++ AV KRKTI+ +D+ A S+ EFLD + P
Sbjct: 19 CSLPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQTKDVEKAIASKHMFEFLDDALNDWP 100
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|915274552|ref|XP_013303333.1| (hypothetical protein NECAME_08727 [Necator americanus] >gi|568294163|gb|ETN81106.1| hypothetical protein NECAME_08727 [Necator americanus]) HSP 1 Score: 73.559 bits (179), Expect = 3.848e-13 Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 0
Query: 119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
++P + +K+I +LDPD + DAI+ + KATELF+ +LAKAS++ AV KRKTI+ +D+ A S+ EFLD + P
Sbjct: 21 SLPTSRVKKICRLDPDLSMIGGDAILFLTKATELFLTELAKASYTQAVLEKRKTIQTKDLDKAIASKHMFEFLDDTLNDWP 101
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|1173912638|gb|OQR75672.1| (DNA polymerase epsilon subunit 4-like [Tropilaelaps mercedesae]) HSP 1 Score: 71.2478 bits (173), Expect = 7.761e-13 Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 0
Query: 100 APIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVV 195
A + P SN + L +P A I+ IMKLDPD SQ+A+ ++AKATELFID LAK + + NK+K ++ +D+ A S + FL+G +
Sbjct: 14 AEVEPQDKSN-----EKLLKLPLAKIRTIMKLDPDLNGASQEAVFLVAKATELFIDALAKETCNFTQQNKKKMLQKKDVESAVDSVEAFSFLEGCL 104
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|510858293|gb|EPB73908.1| (hypothetical protein ANCCEY_07018 [Ancylostoma ceylanicum]) HSP 1 Score: 73.9442 bits (180), Expect = 1.450e-12 Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0
Query: 119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
++P + +K+I +LDPD + DA++ + KATELF+ +LAKAS++ AV KRKTI+ +D+ A S+ EFLD + P
Sbjct: 20 SLPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQTKDVEKAIASKHMFEFLDDALNDWP 100
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|1168085648|gb|OQD86556.1| (hypothetical protein PENANT_c007G07703 [Penicillium antarcticum]) HSP 1 Score: 72.4034 bits (176), Expect = 2.269e-12 Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 0
Query: 119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNK--RKTIKYEDIADARFSQKNMEFLDGVVPQ 197
A+P + IK+I++LD D Q S +A V+A+ATELFI LA+ H++ + + RKT++Y+D+A A N+EFL V+P+
Sbjct: 17 ALPISRIKKIIQLDEDIVQCSNNATFVIARATELFIQYLAEQGHNVVKSERKPRKTVQYKDLAAAVSHTDNLEFLSDVIPK 97 The following BLAST results are available for this feature:
BLAST of EWM28620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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