EWM28620.1, cds2126 (CDS) Nannochloropsis gaditana

Overview
NameEWM28620.1
Unique Namecds2126
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:956490..957089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28620.1
Producthistone-like transcription factor family protein
Orig transcript idgnl|cribi|Naga_100009g27.663.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:956490..957089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Homology
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|585111038|gb|EWM28620.1| (histone-like transcription factor family protein [Nannochloropsis gaditana])

HSP 1 Score: 398.667 bits (1023), Expect = 2.205e-140
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MRLYRQIKKASMSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
            MRLYRQIKKASMSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP
Sbjct:    1 MRLYRQIKKASMSRSPEVLQTSNSALSYASPSQAPSGAAIMMPTAPALPGRSTNTPNTPTGTEERKRDTPEGPKPSPLAGTPASMKAEEAPVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|676387383|ref|XP_009036970.1| (hypothetical protein AURANDRAFT_17325, partial [Aureococcus anophagefferens] >gi|323452365|gb|EGB08239.1| hypothetical protein AURANDRAFT_17325, partial [Aureococcus anophagefferens])

HSP 1 Score: 87.8113 bits (216), Expect = 2.136e-19
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = 0
Query:  117 TLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVP 196
            +L IP+A++KRIMKLDP+  Q++ DA++++AKATE+F++K +  + + A    R T+KYEDIAD     KN EFL  V+P
Sbjct:    1 SLLIPKAAVKRIMKLDPEVNQVANDAVILVAKATEMFLEKFSAEARAQATLRSRTTVKYEDIADTVSGDKNYEFLATVIP 80          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|299469977|emb|CBN79154.1| (histone-like transcription factor family (CBF/NF-Y) [Ectocarpus siliculosus])

HSP 1 Score: 80.1073 bits (196), Expect = 3.992e-15
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 0
Query:   80 GTPASMKAEEA--------PVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVP 196
            GTP++  A  A        P S+K+ R+ P+P              + +P + +KRIMKL  +T+ +S++A++++ KA+E+F++KLA  +   A    RKTIKY D++D R    N+ FL+ VVP
Sbjct:  106 GTPSASAASGAVKKEGGSQPRSAKRPRDTPLP--------------VGLPPSMVKRIMKLGEETRNISKEALVIVVKASEIFLEKLAARAFDHAEKLGRKTIKYRDVSDVRVEDPNLLFLEAVVP 216          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|560119029|emb|CDJ96319.1| (Transcription factor CBF NF-Y archaeal histone domain containing protein [Haemonchus contortus])

HSP 1 Score: 78.5666 bits (192), Expect = 6.936e-15
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0
Query:  105 LSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
            +S  +  V E     +P + +K+I +LDPD   +  DA++ + KATELF+ +LAKAS++ AV  KRKTI+ +DI  A  S+   EFLDG +   P
Sbjct:    8 ISQEHVQVAELLNCTLPTSRVKKICRLDPDLSMIGSDAVLFITKATELFVAELAKASYTQAVLEKRKTIQTKDIDRAIASKAIYEFLDGALTDWP 102          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|748357569|gb|KIH50123.1| (hypothetical protein ANCDUO_19802 [Ancylostoma duodenale])

HSP 1 Score: 74.7146 bits (182), Expect = 1.952e-13
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 0
Query:  119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
            ++P + +K+I +LDPD   +  DA++ + KATELF+ +LAKAS++ AV  KRKTI+ +DI  A  S+   EFLD  +   P
Sbjct:   20 SLPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQAKDIEKAIASKHMFEFLDDALNDWP 100          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|597879677|gb|EYC29042.1| (hypothetical protein Y032_0007g3556 [Ancylostoma ceylanicum])

HSP 1 Score: 74.3294 bits (181), Expect = 3.160e-13
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  118 LAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
             ++P + +K+I +LDPD   +  DA++ + KATELF+ +LAKAS++ AV  KRKTI+ +D+  A  S+   EFLD  +   P
Sbjct:   19 CSLPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQTKDVEKAIASKHMFEFLDDALNDWP 100          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|915274552|ref|XP_013303333.1| (hypothetical protein NECAME_08727 [Necator americanus] >gi|568294163|gb|ETN81106.1| hypothetical protein NECAME_08727 [Necator americanus])

HSP 1 Score: 73.559 bits (179), Expect = 3.848e-13
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 0
Query:  119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
            ++P + +K+I +LDPD   +  DAI+ + KATELF+ +LAKAS++ AV  KRKTI+ +D+  A  S+   EFLD  +   P
Sbjct:   21 SLPTSRVKKICRLDPDLSMIGGDAILFLTKATELFLTELAKASYTQAVLEKRKTIQTKDLDKAIASKHMFEFLDDTLNDWP 101          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|1173912638|gb|OQR75672.1| (DNA polymerase epsilon subunit 4-like [Tropilaelaps mercedesae])

HSP 1 Score: 71.2478 bits (173), Expect = 7.761e-13
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 0
Query:  100 APIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVV 195
            A + P   SN     +  L +P A I+ IMKLDPD    SQ+A+ ++AKATELFID LAK + +    NK+K ++ +D+  A  S +   FL+G +
Sbjct:   14 AEVEPQDKSN-----EKLLKLPLAKIRTIMKLDPDLNGASQEAVFLVAKATELFIDALAKETCNFTQQNKKKMLQKKDVESAVDSVEAFSFLEGCL 104          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|510858293|gb|EPB73908.1| (hypothetical protein ANCCEY_07018 [Ancylostoma ceylanicum])

HSP 1 Score: 73.9442 bits (180), Expect = 1.450e-12
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0
Query:  119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199
            ++P + +K+I +LDPD   +  DA++ + KATELF+ +LAKAS++ AV  KRKTI+ +D+  A  S+   EFLD  +   P
Sbjct:   20 SLPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQTKDVEKAIASKHMFEFLDDALNDWP 100          
BLAST of EWM28620.1 vs. NCBI_GenBank
Match: gi|1168085648|gb|OQD86556.1| (hypothetical protein PENANT_c007G07703 [Penicillium antarcticum])

HSP 1 Score: 72.4034 bits (176), Expect = 2.269e-12
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 0
Query:  119 AIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNK--RKTIKYEDIADARFSQKNMEFLDGVVPQ 197
            A+P + IK+I++LD D  Q S +A  V+A+ATELFI  LA+  H++  + +  RKT++Y+D+A A     N+EFL  V+P+
Sbjct:   17 ALPISRIKKIIQLDEDIVQCSNNATFVIARATELFIQYLAEQGHNVVKSERKPRKTVQYKDLAAAVSHTDNLEFLSDVIPK 97          
The following BLAST results are available for this feature:
BLAST of EWM28620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111038|gb|EWM28620.1|2.205e-140100.00histone-like transcription factor family protein [... [more]
gi|676387383|ref|XP_009036970.1|2.136e-1948.75hypothetical protein AURANDRAFT_17325, partial [Au... [more]
gi|299469977|emb|CBN79154.1|3.992e-1535.20histone-like transcription factor family (CBF/NF-Y... [more]
gi|560119029|emb|CDJ96319.1|6.936e-1542.11Transcription factor CBF NF-Y archaeal histone dom... [more]
gi|748357569|gb|KIH50123.1|1.952e-1344.44hypothetical protein ANCDUO_19802 [Ancylostoma duo... [more]
gi|597879677|gb|EYC29042.1|3.160e-1342.68hypothetical protein Y032_0007g3556 [Ancylostoma c... [more]
gi|915274552|ref|XP_013303333.1|3.848e-1344.44hypothetical protein NECAME_08727 [Necator america... [more]
gi|1173912638|gb|OQR75672.1|7.761e-1340.63DNA polymerase epsilon subunit 4-like [Tropilaelap... [more]
gi|510858293|gb|EPB73908.1|1.450e-1243.21hypothetical protein ANCCEY_07018 [Ancylostoma cey... [more]
gi|1168085648|gb|OQD86556.1|2.269e-1243.21hypothetical protein PENANT_c007G07703 [Penicilliu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2134rna2134Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications