EWM28525.1, cds2120 (CDS) Nannochloropsis gaditana

Overview
NameEWM28525.1
Unique Namecds2120
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:945243..945583 +
Alignment locationCM002458.1:946028..946902 +
Alignment locationCM002458.1:947006..947055 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28525.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g33.568.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:945243..945583 +
CM002458.1supercontigCM002458.1:946028..946902 +
CM002458.1supercontigCM002458.1:947006..947055 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|585110943|gb|EWM28525.1| (hypothetical protein Naga_100009g33 [Nannochloropsis gaditana])

HSP 1 Score: 885.56 bits (2287), Expect = 0.000e+0
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0
Query:    1 MENYEDSPEVLHKTPIDIASSLVEVIESLHSTPIAKAQSKWTDEASDMHEVGCASSFLSELSIEQRFSGFRALAQFKQNASQVQTTSSLPSSRDVPAVATLCRHLAFIILRPDLRSEDIASEYSSMVTVTENETATGGGEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALKVRSHWFSARWSTRKIC 421
            MENYEDSPEVLHKTPIDIASSLVEVIESLHSTPIAKAQSKWTDEASDMHEVGCASSFLSELSIEQRFSGFRALAQFKQNASQVQTTSSLPSSRDVPAVATLCRHLAFIILRPDLRSEDIASEYSSMVTVTENETATGGGEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALKVRSHWFSARWSTRKIC
Sbjct:    1 MENYEDSPEVLHKTPIDIASSLVEVIESLHSTPIAKAQSKWTDEASDMHEVGCASSFLSELSIEQRFSGFRALAQFKQNASQVQTTSSLPSSRDVPAVATLCRHLAFIILRPDLRSEDIASEYSSMVTVTENETATGGGEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALKVRSHWFSARWSTRKIC 421          
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|397573657|gb|EJK48799.1| (hypothetical protein THAOC_32373 [Thalassiosira oceanica])

HSP 1 Score: 78.9518 bits (193), Expect = 5.280e-12
Identity = 66/250 (26.40%), Postives = 111/250 (44.40%), Query Frame = 0
Query:  142 PKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESF--ADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRD----NPFRTTVP-LFHNFKYQIGHDGGV---FEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPL 381
            P LD  ++ Q++ + RE M  +L      LE Y  E E     L + L P +  YKLA PP L  P+PL+ YPL+            +E+   A  S +E    ++Q      S   ++ + A   R       Q D E  A + RKNLQ++DR+ +   ++   +  +RD    N   T+    FH+ + +  + G +         E PL  C  +VG+   T ++T + + F +++   +   R+ L
Sbjct:  698 PTLDAHFINQIKALCRESMIVSLIKAASDLEVYAREFEVSTGNLDQILRPTYESYKLA-PPRLPTPVPLTAYPLDYHETSPPWGPHVKEALESASASSNEEGGVQSQLSSFEQSAKVISSVVAGFQR-------QNDMEQGARLGRKNLQVMDRLAKMQSHKRDSIARIRDSYGENYLATSAADDFHSLRNKSKNIGSLTDRIHASPNEVPLLICNVLVGNAAGTCYVTHSHLLFNTQLVPILGGNRVNL 939          
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|299115889|emb|CBN75898.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.4774 bits (171), Expect = 3.106e-9
Identity = 69/245 (28.16%), Postives = 107/245 (43.67%), Query Frame = 0
Query:  143 KLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEP----------PGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPF---RTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFV 374
            ++D  +L Q+E M + +M  +L      L+++   +E + + +   L  MF L  L             P  N+ LP S  P+  L  C       EE   + S H    +E  R            M  +  R  R+   +CD +MTA MQRKN Q++ R+ R   YQ  L + LRD      R+ +    +   Q   + G+  D  VE P+Y+C  I   RP  L++T+  +  V+KV GF 
Sbjct:  756 EIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDL--C-------EEDRGELSSH-RFCSEASR-----------VMANVLARCIRYT-EKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAVRRSRMTAAFSRVMQSRPEAGI--DPNVEAPVYFCSIICNRRPGYLYLTYWHVCVVTKVPGFA 976          
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|298705624|emb|CBJ28875.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.6994 bits (156), Expect = 1.665e-7
Identity = 72/279 (25.81%), Postives = 109/279 (39.07%), Query Frame = 0
Query:  140 EDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNL----LAACN------------QSARSEEESFADKS----DHENVWAENQRPH-------------RSGSLDKVT-YMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNP---FRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPL 381
            E+  LD  Y+R L  M   E    L      LE++V ++E++  +L+  L+P +    LA PP      PLS YPL      ++AC             +  R   +SF  +     D ENV+A                   + GS   V   + +L    W      CD E  A ++RK+ Q+ DR+     ++  L+  LRD       ++ P    F  +       F     E  L  C+ +   R   L++T   + F S V GF   R LPL
Sbjct:  482 EEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLA-PPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGGDSFPPQKGVDVDDENVFASGGGGGGGGGGEGDEGRGAKVGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAAR-------FRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPL 752          
The following BLAST results are available for this feature:
BLAST of EWM28525.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585110943|gb|EWM28525.1|0.000e+0100.00hypothetical protein Naga_100009g33 [Nannochlorops... [more]
gi|397573657|gb|EJK48799.1|5.280e-1226.40hypothetical protein THAOC_32373 [Thalassiosira oc... [more]
gi|299115889|emb|CBN75898.1|3.106e-928.16expressed unknown protein [Ectocarpus siliculosus][more]
gi|298705624|emb|CBJ28875.1|1.665e-725.81conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2128rna2128Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications