EWM28525.1, cds2120 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|585110943|gb|EWM28525.1| (hypothetical protein Naga_100009g33 [Nannochloropsis gaditana]) HSP 1 Score: 885.56 bits (2287), Expect = 0.000e+0 Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0
Query: 1 MENYEDSPEVLHKTPIDIASSLVEVIESLHSTPIAKAQSKWTDEASDMHEVGCASSFLSELSIEQRFSGFRALAQFKQNASQVQTTSSLPSSRDVPAVATLCRHLAFIILRPDLRSEDIASEYSSMVTVTENETATGGGEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALKVRSHWFSARWSTRKIC 421
MENYEDSPEVLHKTPIDIASSLVEVIESLHSTPIAKAQSKWTDEASDMHEVGCASSFLSELSIEQRFSGFRALAQFKQNASQVQTTSSLPSSRDVPAVATLCRHLAFIILRPDLRSEDIASEYSSMVTVTENETATGGGEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALKVRSHWFSARWSTRKIC
Sbjct: 1 MENYEDSPEVLHKTPIDIASSLVEVIESLHSTPIAKAQSKWTDEASDMHEVGCASSFLSELSIEQRFSGFRALAQFKQNASQVQTTSSLPSSRDVPAVATLCRHLAFIILRPDLRSEDIASEYSSMVTVTENETATGGGEDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPLDRITSHGMTYMHLGVKRAKAIALKVRSHWFSARWSTRKIC 421
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|397573657|gb|EJK48799.1| (hypothetical protein THAOC_32373 [Thalassiosira oceanica]) HSP 1 Score: 78.9518 bits (193), Expect = 5.280e-12 Identity = 66/250 (26.40%), Postives = 111/250 (44.40%), Query Frame = 0
Query: 142 PKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNLLAACNQSARSEEESF--ADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRD----NPFRTTVP-LFHNFKYQIGHDGGV---FEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPL 381
P LD ++ Q++ + RE M +L LE Y E E L + L P + YKLA PP L P+PL+ YPL+ +E+ A S +E ++Q S ++ + A R Q D E A + RKNLQ++DR+ + ++ + +RD N T+ FH+ + + + G + E PL C +VG+ T ++T + + F +++ + R+ L
Sbjct: 698 PTLDAHFINQIKALCRESMIVSLIKAASDLEVYAREFEVSTGNLDQILRPTYESYKLA-PPRLPTPVPLTAYPLDYHETSPPWGPHVKEALESASASSNEEGGVQSQLSSFEQSAKVISSVVAGFQR-------QNDMEQGARLGRKNLQVMDRLAKMQSHKRDSIARIRDSYGENYLATSAADDFHSLRNKSKNIGSLTDRIHASPNEVPLLICNVLVGNAAGTCYVTHSHLLFNTQLVPILGGNRVNL 939
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|299115889|emb|CBN75898.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 70.4774 bits (171), Expect = 3.106e-9 Identity = 69/245 (28.16%), Postives = 107/245 (43.67%), Query Frame = 0
Query: 143 KLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEP----------PGLNEPLPLSYYPLNLLAACNQSARSEEESFADKSDHENVWAENQRPHRSGSLDKVTYMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPF---RTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFV 374
++D +L Q+E M + +M +L L+++ +E + + + L MF L L P N+ LP S P+ L C EE + S H +E R M + R R+ +CD +MTA MQRKN Q++ R+ R YQ L + LRD R+ + + Q + G+ D VE P+Y+C I RP L++T+ + V+KV GF
Sbjct: 756 EIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDL--C-------EEDRGELSSH-RFCSEASR-----------VMANVLARCIRYT-EKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAVRRSRMTAAFSRVMQSRPEAGI--DPNVEAPVYFCSIICNRRPGYLYLTYWHVCVVTKVPGFA 976
BLAST of EWM28525.1 vs. NCBI_GenBank
Match: gi|298705624|emb|CBJ28875.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 64.6994 bits (156), Expect = 1.665e-7 Identity = 72/279 (25.81%), Postives = 109/279 (39.07%), Query Frame = 0
Query: 140 EDPKLDRFYLRQLEDMAREEMHKALDGTIQQLEDYVLEKEKQCLQLKEFLMPMFTLYKLAEPPGLNEPLPLSYYPLNL----LAACN------------QSARSEEESFADKS----DHENVWAENQRPH-------------RSGSLDKVT-YMDALRDRAWRHNVMQCDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNP---FRTTVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGFVWARRLPL 381
E+ LD Y+R L M E L LE++V ++E++ +L+ L+P + LA PP PLS YPL ++AC + R +SF + D ENV+A + GS V + +L W CD E A ++RK+ Q+ DR+ ++ L+ LRD ++ P F + F E L C+ + R L++T + F S V GF R LPL
Sbjct: 482 EEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLA-PPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGGDSFPPQKGVDVDDENVFASGGGGGGGGGGEGDEGRGAKVGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAAR-------FRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPL 752 The following BLAST results are available for this feature:
BLAST of EWM28525.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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