EWM28598.1, cds2102 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|585111016|gb|EWM28598.1| (tpr domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR
Sbjct: 1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|553188851|ref|XP_005854881.1| (tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294189|gb|EKU21489.1| tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0 Identity = 329/332 (99.10%), Postives = 329/332 (99.10%), Query Frame = 0
Query: 1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMAS ETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAG RR LLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR
Sbjct: 33 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 364
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|553178693|ref|XP_005852594.1| (tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295940|gb|EKU23239.1| tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0 Identity = 329/332 (99.10%), Postives = 329/332 (99.10%), Query Frame = 0
Query: 1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMAS ETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAG RR LLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR
Sbjct: 45 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 376
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|299469879|emb|CBN76733.1| (TPR domain-containing protein [Ectocarpus siliculosus]) HSP 1 Score: 98.9821 bits (245), Expect = 4.247e-19 Identity = 73/198 (36.87%), Postives = 111/198 (56.06%), Query Frame = 0
Query: 114 LRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQE----LEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEE 307
L +VH LA+++LS + L+HF +LVA T D RR L+ +F R +D +Q T G+ L++G ++R + + A ++F +V++ AR G+G RM EARALGN ATV R +I YR C +LL + + ER++LN L + IEA R+ A + E+L L E + NV+L+ RL+E
Sbjct: 350 LSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRR----NDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCI----GEG-RM-EARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLG-RLQE 536
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|695383701|ref|XP_009517788.1| (hypothetical protein PHYSODRAFT_310398 [Phytophthora sojae] >gi|348690699|gb|EGZ30513.1| hypothetical protein PHYSODRAFT_310398 [Phytophthora sojae]) HSP 1 Score: 68.5514 bits (166), Expect = 5.042e-9 Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 0
Query: 179 ELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRL 305
EL G +Y++K ++A L+F ++AR ++GD ++VEARALGN TV D + +++ Y+ C + +E+ + ER +LN L L+L+ + YE A C L T N + +R+
Sbjct: 1129 ELNVGMEFYKQKRLDDALLRFMLAQEMAR----ATGD--QVVEARALGNLGTVYLDKKNPQQAVSCYQQCLDITRAIEDTKRERTILNNLVLALVASEDYERALACCRVQLETTTNAINRRKIISRM 1249
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|970656660|gb|KUF94646.1| (hypothetical protein AM587_10012218 [Phytophthora nicotianae]) HSP 1 Score: 65.0846 bits (157), Expect = 5.999e-8 Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 0
Query: 172 TPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRL 305
T LD EL G +Y++K ++A L+F ++AR G ++VEARALGN TV D + +++ Y+ C + +E+ + ER +LN L L+L+ + E A C+ L T N + +R+
Sbjct: 1091 TTSALD-ELNVGMEFYKQKRLDDALLRFMLAQEMAR------ATGDQVVEARALGNLGTVYLDKKNPHQAVRCYQHCLDITRAIEDTKRERTILNNLVLALVASEDLERALACCQVQLETTTNAINRRKIISRM 1217
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|301119323|ref|XP_002907389.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105901|gb|EEY63953.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 64.6994 bits (156), Expect = 1.052e-7 Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 0
Query: 179 ELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRL 305
EL G +Y++K ++A L+F ++AR S+GD ++VEARALGN TV D + +++ Y+ C + +E+ + ER +LN L L+L+ + E A C+ L T N + +R+
Sbjct: 1185 ELNVGMEFYKQKRLDDALLRFMLAQEMAR----STGD--QVVEARALGNLGTVYLDKKNPHQAVRCYQHCLDITRAIEDTKRERTILNNLVLALVASEDLERALSCCQVQLETTTNAMNRRKIISRM 1305 The following BLAST results are available for this feature:
BLAST of EWM28598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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