EWM28598.1, cds2102 (CDS) Nannochloropsis gaditana

Overview
NameEWM28598.1
Unique Namecds2102
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:911824..912822 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28598.1
Producttpr domain-containing protein
Orig transcript idgnl|cribi|Naga_100009g50.641.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:911824..912822 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|585111016|gb|EWM28598.1| (tpr domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
            MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR
Sbjct:    1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332          
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|553188851|ref|XP_005854881.1| (tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294189|gb|EKU21489.1| tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 329/332 (99.10%), Postives = 329/332 (99.10%), Query Frame = 0
Query:    1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
            MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMAS ETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAG RR LLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR
Sbjct:   33 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 364          
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|553178693|ref|XP_005852594.1| (tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295940|gb|EKU23239.1| tpr domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 329/332 (99.10%), Postives = 329/332 (99.10%), Query Frame = 0
Query:    1 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASAETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 332
            MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMAS ETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAG RR LLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR
Sbjct:   45 MRQRLRLLHTMSSVSSMGEAATLLNRAMLNTACGRFEDALCLLDDVLGMASTETTSVEEARMQARAAKVKGTVLQEMGLMKEASVWYELSVRAGRRLLQQAPLSEDLRKYFPSLRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGDRRRLLREFERLSLEHDFWQDVTPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEEIQACLRDGRRTMERESVDEGNEETR 376          
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|299469879|emb|CBN76733.1| (TPR domain-containing protein [Ectocarpus siliculosus])

HSP 1 Score: 98.9821 bits (245), Expect = 4.247e-19
Identity = 73/198 (36.87%), Postives = 111/198 (56.06%), Query Frame = 0
Query:  114 LRYVHNQLAQFYLSVRAFALVLEHFEQLVALTDDAGHRRLLLREFERLSLEHDFWQDVTPGMLDQE----LEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRLEE 307
            L +VH  LA+++LS  +    L+HF +LVA T D   RR L+ +F R    +D +Q  T G+        L++G  ++R + +  A ++F +V++ AR      G+G RM EARALGN ATV     R   +I  YR C +LL +   +  ER++LN L +  IEA R+  A +  E+L  L E + NV+L+  RL+E
Sbjct:  350 LSHVHQLLAEYFLSRGSPGRGLDHFSELVACTTDEDARRQLVDDFRR----NDGFQRATAGLTQSSVQEILDEGISYFRCQDYGPAGVRFEKVLRDARCI----GEG-RM-EARALGNLATVDYKTHRIPAAIRRYRTCVQLLRQQGNQATERKILNYLVMCCIEAQRWAPAKLFHEQLSKLAESEQNVQLLG-RLQE 536          
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|695383701|ref|XP_009517788.1| (hypothetical protein PHYSODRAFT_310398 [Phytophthora sojae] >gi|348690699|gb|EGZ30513.1| hypothetical protein PHYSODRAFT_310398 [Phytophthora sojae])

HSP 1 Score: 68.5514 bits (166), Expect = 5.042e-9
Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 0
Query:  179 ELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRL 305
            EL  G  +Y++K  ++A L+F    ++AR    ++GD  ++VEARALGN  TV  D +   +++  Y+ C  +   +E+ + ER +LN L L+L+ +  YE A   C   L  T    N   + +R+
Sbjct: 1129 ELNVGMEFYKQKRLDDALLRFMLAQEMAR----ATGD--QVVEARALGNLGTVYLDKKNPQQAVSCYQQCLDITRAIEDTKRERTILNNLVLALVASEDYERALACCRVQLETTTNAINRRKIISRM 1249          
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|970656660|gb|KUF94646.1| (hypothetical protein AM587_10012218 [Phytophthora nicotianae])

HSP 1 Score: 65.0846 bits (157), Expect = 5.999e-8
Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 0
Query:  172 TPGMLDQELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRL 305
            T   LD EL  G  +Y++K  ++A L+F    ++AR        G ++VEARALGN  TV  D +   +++  Y+ C  +   +E+ + ER +LN L L+L+ +   E A   C+  L  T    N   + +R+
Sbjct: 1091 TTSALD-ELNVGMEFYKQKRLDDALLRFMLAQEMAR------ATGDQVVEARALGNLGTVYLDKKNPHQAVRCYQHCLDITRAIEDTKRERTILNNLVLALVASEDLERALACCQVQLETTTNAINRRKIISRM 1217          
BLAST of EWM28598.1 vs. NCBI_GenBank
Match: gi|301119323|ref|XP_002907389.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105901|gb|EEY63953.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 64.6994 bits (156), Expect = 1.052e-7
Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 0
Query:  179 ELEQGRRWYREKCWEEAALQFRRVVQLARLASFSSGDGTRMVEARALGNYATVLKDLRRCDESILAYRLCCRLLEELEEEQMERRMLNGLSLSLIEAHRYEDAAVVCERLLVLTERDDNVELVKTRL 305
            EL  G  +Y++K  ++A L+F    ++AR    S+GD  ++VEARALGN  TV  D +   +++  Y+ C  +   +E+ + ER +LN L L+L+ +   E A   C+  L  T    N   + +R+
Sbjct: 1185 ELNVGMEFYKQKRLDDALLRFMLAQEMAR----STGD--QVVEARALGNLGTVYLDKKNPHQAVRCYQHCLDITRAIEDTKRERTILNNLVLALVASEDLERALSCCQVQLETTTNAMNRRKIISRM 1305          
The following BLAST results are available for this feature:
BLAST of EWM28598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585111016|gb|EWM28598.1|0.000e+0100.00tpr domain-containing protein [Nannochloropsis gad... [more]
gi|553188851|ref|XP_005854881.1|0.000e+099.10tpr domain-containing protein, partial [Nannochlor... [more]
gi|553178693|ref|XP_005852594.1|0.000e+099.10tpr domain-containing protein, partial [Nannochlor... [more]
gi|299469879|emb|CBN76733.1|4.247e-1936.87TPR domain-containing protein [Ectocarpus siliculo... [more]
gi|695383701|ref|XP_009517788.1|5.042e-932.28hypothetical protein PHYSODRAFT_310398 [Phytophtho... [more]
gi|970656660|gb|KUF94646.1|5.999e-831.34hypothetical protein AM587_10012218 [Phytophthora ... [more]
gi|301119323|ref|XP_002907389.1|1.052e-732.28conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2110rna2110Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications