EWM28594.1, cds2089 (CDS) Nannochloropsis gaditana

Overview
NameEWM28594.1
Unique Namecds2089
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:879112..879588 -
Alignment locationCM002458.1:878839..878850 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28594.1
Producttranslation initiation factor eif-5a
Orig transcript idgnl|cribi|Naga_100009g63.637.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:879112..879588 -
CM002458.1supercontigCM002458.1:878839..878850 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0043022ribosome binding
GO:0003746translation elongation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0045905positive regulation of translational termination
GO:0006452translational frameshifting
GO:0045901positive regulation of translational elongation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR019769Trans_elong_IF5A_hypusine_site
IPR014722Rib_L2_dom2
IPR001884Transl_elong_IF5A
IPR005824KOW
IPR020189Transl_elong_IF5A_C
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|585111012|gb|EWM28594.1| (translation initiation factor eif-5a [Nannochloropsis gaditana])

HSP 1 Score: 333.183 bits (853), Expect = 8.973e-116
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
            MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA
Sbjct:    1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|299469925|emb|CBN76779.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 225.328 bits (573), Expect = 1.599e-72
Identity = 107/155 (69.03%), Postives = 129/155 (83.23%), Query Frame = 0
Query:    9 IEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
            + DYDF+GT AGAS   PSEAGQI+KGGYI+IKG PCKVVNVSTSKTGKHGHAKANFTA DIF GKK+EDV+P+THTT VP V+R+EYQLLDI +DGF SLL E+G T+DDL+LP YPEGF  EI   + +G +L V+V++A G +QI+ YKEE+
Sbjct:   45 LNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEES 199          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|325180985|emb|CCA15394.1| (conserved unknown protein putative [Albugo laibachii Nc14])

HSP 1 Score: 218.009 bits (554), Expect = 3.755e-70
Identity = 100/153 (65.36%), Postives = 128/153 (83.66%), Query Frame = 0
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            +DY F+ T AGASD +P EAGQI+KGG+IMIKG+PCKVVNVSTSKTGKHGHAK NFTA++IF  KK+ED+VP+THTT VP V+R E+ LLDI EDGFVS++++ G TR+D+KLP+YPE  +QEI   ++ GK L V+VL ACG++QII+ KE+
Sbjct:    4 DDYTFASTDAGASDTYPCEAGQIRKGGFIMIKGQPCKVVNVSTSKTGKHGHAKCNFTALNIFTNKKLEDIVPSTHTTEVPFVSRKEFTLLDISEDGFVSIMEDSGDTREDIKLPEYPETLEQEIRADFEAGKQLVVTVLKACGVEQIISKKED 156          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|635363233|emb|CCI48174.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 217.624 bits (553), Expect = 5.884e-70
Identity = 101/153 (66.01%), Postives = 128/153 (83.66%), Query Frame = 0
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            +DY F+ T AGASD +PSEAGQI+KGG+IMIK +PCKVVNVSTSKTGKHGHAK NFTA++IF  KK+ED+VP+THTT VP V+R EY LLDI EDGFVS++++ G TR+D+KLP+YPE  +QEI   ++ GK L V+VL ACG++QII+ KE+
Sbjct:    4 DDYSFASTDAGASDTYPSEAGQIRKGGFIMIKRQPCKVVNVSTSKTGKHGHAKCNFTALNIFTNKKLEDIVPSTHTTEVPFVSRKEYTLLDISEDGFVSIMEDSGDTREDIKLPEYPETLEQEIRADFEAGKLLVVTVLKACGVEQIISKKED 156          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|1214713941|gb|OWZ24818.1| (Translation elongation factor IF5A [Phytophthora megakarya])

HSP 1 Score: 209.534 bits (532), Expect = 9.553e-67
Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 0
Query:    1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            MA+E     +D++F  T AGAS+ +PSEAGQI+KGG+IMIKG PCKVVNVSTSKTGKHGHAK NFTA+DIF  KK ED+VP+THTT VP V+R+EY LLDI +D F+SL+ + G TR+D+KLP +PE F  EI   + DGK L ++VL ACG +Q+IA KE+
Sbjct:    1 MADE-----QDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFLSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQVIAKKED 157          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|675168275|ref|XP_008893022.1| (translation elongation factor IF5A [Phytophthora parasitica INRA-310] >gi|566022550|gb|ETI45461.1| translation elongation factor IF5A [Phytophthora parasitica P1569] >gi|567959843|gb|ETK85407.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|567988548|gb|ETL38824.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|568017783|gb|ETL91960.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|568048181|gb|ETM45242.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|568106575|gb|ETN21205.1| translation elongation factor IF5A [Phytophthora parasitica INRA-310] >gi|570326152|gb|ETO74100.1| translation elongation factor IF5A [Phytophthora parasitica P1976] >gi|570950009|gb|ETP15266.1| translation elongation factor IF5A [Phytophthora parasitica CJ01A1] >gi|570983512|gb|ETP43322.1| translation elongation factor IF5A [Phytophthora parasitica P10297] >gi|970663366|gb|KUG00558.1| Eukaryotic translation initiation factor 5A-1 [Phytophthora nicotianae])

HSP 1 Score: 209.149 bits (531), Expect = 1.202e-66
Identity = 102/162 (62.96%), Postives = 125/162 (77.16%), Query Frame = 0
Query:    1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            MA+E      D++F  T AGAS+ +PSEAGQI+KGG+IMIKG PCKVVNVSTSKTGKHGHAK NFTA+DIF  KK ED+VP+THTT VP V+R+EY LLDI +D F SL+ + G TR+D+KLP +P+ F  EI   + DGK L V+VL ACG +QIIA KE+
Sbjct:    1 MADEE----HDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGETREDIKLPTFPDNFADEIRADFDDGKQLVVTVLKACGTEQIIAKKED 158          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|813163223|ref|XP_012202672.1| (translation initiation factor eIF-5A [Saprolegnia parasitica CBS 223.65] >gi|641532504|gb|KDO26529.1| translation initiation factor eIF-5A [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 208.764 bits (530), Expect = 1.616e-66
Identity = 101/153 (66.01%), Postives = 121/153 (79.08%), Query Frame = 0
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            EDY F  T AGAS  +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+TH   VP V+R+EY LLDI D  +VSL+ + G TR+D+KLP+ PEGF  EI   ++ GK LS+SVL ACGI+QIIA KE+
Sbjct:    4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGETREDIKLPNIPEGFGDEIRADFEAGKQLSISVLRACGIEQIIAKKED 156          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|1173935179|gb|OQR86337.1| (eukaryotic initiation factor [Achlya hypogyna])

HSP 1 Score: 208.379 bits (529), Expect = 2.269e-66
Identity = 101/153 (66.01%), Postives = 121/153 (79.08%), Query Frame = 0
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            EDY F  T AGAS  +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+TH   VP V+R+EY LLDI D  +VSL+ + G TR+D+KLP  PEGF +EI   ++ GK LS+SVL ACGI+QIIA KE+
Sbjct:    4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGETREDIKLPAIPEGFAEEIRADFEAGKQLSLSVLRACGIEQIIAKKED 156          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|669170049|ref|XP_008620373.1| (translation initiation factor eIF-5A [Saprolegnia diclina VS20] >gi|530727986|gb|EQC26228.1| translation initiation factor eIF-5A [Saprolegnia diclina VS20])

HSP 1 Score: 207.223 bits (526), Expect = 6.708e-66
Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 0
Query:   10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            EDY F  T AGAS  +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+TH   VP V+R+EY LLDI D  +VSL+ + G TR+D+KLP  PEGF  EI   ++ GK L++SVL ACGI+QIIA KE+
Sbjct:    4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGDTREDIKLPSIPEGFGDEIRADFEAGKQLAISVLRACGIEQIIAKKED 156          
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|695414782|ref|XP_009526393.1| (hypothetical protein PHYSODRAFT_285912 [Phytophthora sojae] >gi|348677518|gb|EGZ17335.1| hypothetical protein PHYSODRAFT_285912 [Phytophthora sojae])

HSP 1 Score: 207.223 bits (526), Expect = 7.161e-66
Identity = 98/152 (64.47%), Postives = 121/152 (79.61%), Query Frame = 0
Query:   11 DYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
            D++F  T AGAS+ +PSEAGQI+KGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF  KK ED+VP+THTT VP V+R+EY LLDI +D F SL+ + G TR+D+KLP +PE F  EI   + DGK L ++VL ACG +QIIA KE+
Sbjct:    8 DFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQIIAKKED 159          
The following BLAST results are available for this feature:
BLAST of EWM28594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111012|gb|EWM28594.1|8.973e-116100.00translation initiation factor eif-5a [Nannochlorop... [more]
gi|299469925|emb|CBN76779.1|1.599e-7269.03conserved unknown protein [Ectocarpus siliculosus][more]
gi|325180985|emb|CCA15394.1|3.755e-7065.36conserved unknown protein putative [Albugo laibach... [more]
gi|635363233|emb|CCI48174.1|5.884e-7066.01unnamed protein product [Albugo candida][more]
gi|1214713941|gb|OWZ24818.1|9.553e-6762.35Translation elongation factor IF5A [Phytophthora m... [more]
gi|675168275|ref|XP_008893022.1|1.202e-6662.96translation elongation factor IF5A [Phytophthora p... [more]
gi|813163223|ref|XP_012202672.1|1.616e-6666.01translation initiation factor eIF-5A [Saprolegnia ... [more]
gi|1173935179|gb|OQR86337.1|2.269e-6666.01eukaryotic initiation factor [Achlya hypogyna][more]
gi|669170049|ref|XP_008620373.1|6.708e-6665.36translation initiation factor eIF-5A [Saprolegnia ... [more]
gi|695414782|ref|XP_009526393.1|7.161e-6664.47hypothetical protein PHYSODRAFT_285912 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2097rna2097Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications