EWM28594.1, cds2089 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|585111012|gb|EWM28594.1| (translation initiation factor eif-5a [Nannochloropsis gaditana]) HSP 1 Score: 333.183 bits (853), Expect = 8.973e-116 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA
Sbjct: 1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIEDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|299469925|emb|CBN76779.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 225.328 bits (573), Expect = 1.599e-72 Identity = 107/155 (69.03%), Postives = 129/155 (83.23%), Query Frame = 0
Query: 9 IEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEEA 162
+ DYDF+GT AGAS PSEAGQI+KGGYI+IKG PCKVVNVSTSKTGKHGHAKANFTA DIF GKK+EDV+P+THTT VP V+R+EYQLLDI +DGF SLL E+G T+DDL+LP YPEGF EI + +G +L V+V++A G +QI+ YKEE+
Sbjct: 45 LNDYDFTGTDAGASHTIPSEAGQIRKGGYIVIKGHPCKVVNVSTSKTGKHGHAKANFTATDIFTGKKLEDVIPSTHTTSVPVVSRNEYQLLDISDDGFCSLLTEEGDTKDDLQLPTYPEGFGNEIKAKFDEGATLCVTVMAAMGHEQIVTYKEES 199
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|325180985|emb|CCA15394.1| (conserved unknown protein putative [Albugo laibachii Nc14]) HSP 1 Score: 218.009 bits (554), Expect = 3.755e-70 Identity = 100/153 (65.36%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
+DY F+ T AGASD +P EAGQI+KGG+IMIKG+PCKVVNVSTSKTGKHGHAK NFTA++IF KK+ED+VP+THTT VP V+R E+ LLDI EDGFVS++++ G TR+D+KLP+YPE +QEI ++ GK L V+VL ACG++QII+ KE+
Sbjct: 4 DDYTFASTDAGASDTYPCEAGQIRKGGFIMIKGQPCKVVNVSTSKTGKHGHAKCNFTALNIFTNKKLEDIVPSTHTTEVPFVSRKEFTLLDISEDGFVSIMEDSGDTREDIKLPEYPETLEQEIRADFEAGKQLVVTVLKACGVEQIISKKED 156
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|635363233|emb|CCI48174.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 217.624 bits (553), Expect = 5.884e-70 Identity = 101/153 (66.01%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
+DY F+ T AGASD +PSEAGQI+KGG+IMIK +PCKVVNVSTSKTGKHGHAK NFTA++IF KK+ED+VP+THTT VP V+R EY LLDI EDGFVS++++ G TR+D+KLP+YPE +QEI ++ GK L V+VL ACG++QII+ KE+
Sbjct: 4 DDYSFASTDAGASDTYPSEAGQIRKGGFIMIKRQPCKVVNVSTSKTGKHGHAKCNFTALNIFTNKKLEDIVPSTHTTEVPFVSRKEYTLLDISEDGFVSIMEDSGDTREDIKLPEYPETLEQEIRADFEAGKLLVVTVLKACGVEQIISKKED 156
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|1214713941|gb|OWZ24818.1| (Translation elongation factor IF5A [Phytophthora megakarya]) HSP 1 Score: 209.534 bits (532), Expect = 9.553e-67 Identity = 101/162 (62.35%), Postives = 127/162 (78.40%), Query Frame = 0
Query: 1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
MA+E +D++F T AGAS+ +PSEAGQI+KGG+IMIKG PCKVVNVSTSKTGKHGHAK NFTA+DIF KK ED+VP+THTT VP V+R+EY LLDI +D F+SL+ + G TR+D+KLP +PE F EI + DGK L ++VL ACG +Q+IA KE+
Sbjct: 1 MADE-----QDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFLSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQVIAKKED 157
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|675168275|ref|XP_008893022.1| (translation elongation factor IF5A [Phytophthora parasitica INRA-310] >gi|566022550|gb|ETI45461.1| translation elongation factor IF5A [Phytophthora parasitica P1569] >gi|567959843|gb|ETK85407.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|567988548|gb|ETL38824.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|568017783|gb|ETL91960.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|568048181|gb|ETM45242.1| translation elongation factor IF5A [Phytophthora parasitica] >gi|568106575|gb|ETN21205.1| translation elongation factor IF5A [Phytophthora parasitica INRA-310] >gi|570326152|gb|ETO74100.1| translation elongation factor IF5A [Phytophthora parasitica P1976] >gi|570950009|gb|ETP15266.1| translation elongation factor IF5A [Phytophthora parasitica CJ01A1] >gi|570983512|gb|ETP43322.1| translation elongation factor IF5A [Phytophthora parasitica P10297] >gi|970663366|gb|KUG00558.1| Eukaryotic translation initiation factor 5A-1 [Phytophthora nicotianae]) HSP 1 Score: 209.149 bits (531), Expect = 1.202e-66 Identity = 102/162 (62.96%), Postives = 125/162 (77.16%), Query Frame = 0
Query: 1 MAEEAAATIEDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
MA+E D++F T AGAS+ +PSEAGQI+KGG+IMIKG PCKVVNVSTSKTGKHGHAK NFTA+DIF KK ED+VP+THTT VP V+R+EY LLDI +D F SL+ + G TR+D+KLP +P+ F EI + DGK L V+VL ACG +QIIA KE+
Sbjct: 1 MADEE----HDFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVNVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGETREDIKLPTFPDNFADEIRADFDDGKQLVVTVLKACGTEQIIAKKED 158
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|813163223|ref|XP_012202672.1| (translation initiation factor eIF-5A [Saprolegnia parasitica CBS 223.65] >gi|641532504|gb|KDO26529.1| translation initiation factor eIF-5A [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 208.764 bits (530), Expect = 1.616e-66 Identity = 101/153 (66.01%), Postives = 121/153 (79.08%), Query Frame = 0
Query: 10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
EDY F T AGAS +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF KK ED+VP+TH VP V+R+EY LLDI D +VSL+ + G TR+D+KLP+ PEGF EI ++ GK LS+SVL ACGI+QIIA KE+
Sbjct: 4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGETREDIKLPNIPEGFGDEIRADFEAGKQLSISVLRACGIEQIIAKKED 156
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|1173935179|gb|OQR86337.1| (eukaryotic initiation factor [Achlya hypogyna]) HSP 1 Score: 208.379 bits (529), Expect = 2.269e-66 Identity = 101/153 (66.01%), Postives = 121/153 (79.08%), Query Frame = 0
Query: 10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
EDY F T AGAS +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF KK ED+VP+TH VP V+R+EY LLDI D +VSL+ + G TR+D+KLP PEGF +EI ++ GK LS+SVL ACGI+QIIA KE+
Sbjct: 4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGETREDIKLPAIPEGFAEEIRADFEAGKQLSLSVLRACGIEQIIAKKED 156
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|669170049|ref|XP_008620373.1| (translation initiation factor eIF-5A [Saprolegnia diclina VS20] >gi|530727986|gb|EQC26228.1| translation initiation factor eIF-5A [Saprolegnia diclina VS20]) HSP 1 Score: 207.223 bits (526), Expect = 6.708e-66 Identity = 100/153 (65.36%), Postives = 120/153 (78.43%), Query Frame = 0
Query: 10 EDYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDIED-GFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
EDY F T AGAS +PSEAGQ+KKGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF KK ED+VP+TH VP V+R+EY LLDI D +VSL+ + G TR+D+KLP PEGF EI ++ GK L++SVL ACGI+QIIA KE+
Sbjct: 4 EDYHFESTDAGASLTYPSEAGQVKKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHNCSVPFVSRAEYTLLDISDEDYVSLMDDSGDTREDIKLPSIPEGFGDEIRADFEAGKQLAISVLRACGIEQIIAKKED 156
BLAST of EWM28594.1 vs. NCBI_GenBank
Match: gi|695414782|ref|XP_009526393.1| (hypothetical protein PHYSODRAFT_285912 [Phytophthora sojae] >gi|348677518|gb|EGZ17335.1| hypothetical protein PHYSODRAFT_285912 [Phytophthora sojae]) HSP 1 Score: 207.223 bits (526), Expect = 7.161e-66 Identity = 98/152 (64.47%), Postives = 121/152 (79.61%), Query Frame = 0
Query: 11 DYDFSGTTAGASDVFPSEAGQIKKGGYIMIKGRPCKVVNVSTSKTGKHGHAKANFTAIDIFNGKKVEDVVPTTHTTYVPNVNRSEYQLLDI-EDGFVSLLQEDGGTRDDLKLPDYPEGFDQEILKAYQDGKSLSVSVLSACGIDQIIAYKEE 161
D++F T AGAS+ +PSEAGQI+KGG+IMIKG PCKVV+VSTSKTGKHGHAK NFTA+DIF KK ED+VP+THTT VP V+R+EY LLDI +D F SL+ + G TR+D+KLP +PE F EI + DGK L ++VL ACG +QIIA KE+
Sbjct: 8 DFEFHSTDAGASETYPSEAGQIRKGGFIMIKGHPCKVVSVSTSKTGKHGHAKCNFTALDIFTNKKYEDIVPSTHTTSVPFVSRAEYTLLDITDDDFCSLMDDSGETREDIKLPTFPETFADEIRADFDDGKQLVLTVLKACGTEQIIAKKED 159 The following BLAST results are available for this feature:
BLAST of EWM28594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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