EWM28605.1, cds2051 (CDS) Nannochloropsis gaditana

Overview
NameEWM28605.1
Unique Namecds2051
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:792845..793040 -
Alignment locationCM002458.1:792679..792787 -
Alignment locationCM002458.1:792266..792545 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28605.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100009g105.648.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:792845..793040 -
CM002458.1supercontigCM002458.1:792679..792787 -
CM002458.1supercontigCM002458.1:792266..792545 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|585111023|gb|EWM28605.1| (hypothetical protein Naga_100009g105 [Nannochloropsis gaditana])

HSP 1 Score: 398.282 bits (1022), Expect = 2.112e-140
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MASHRPGVTRSRETADALGEEDKKLRESCSRDLGSGVHAWRKELPRARLRVIHVAFVICLFFYVQTLLHAPTTFQRNEGFFHLSPDNNIDEIGVSFYKIRFSCQNLNANIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE 194
            MASHRPGVTRSRETADALGEEDKKLRESCSRDLGSGVHAWRKELPRARLRVIHVAFVICLFFYVQTLLHAPTTFQRNEGFFHLSPDNNIDEIGVSFYKIRFSCQNLNANIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE
Sbjct:    1 MASHRPGVTRSRETADALGEEDKKLRESCSRDLGSGVHAWRKELPRARLRVIHVAFVICLFFYVQTLLHAPTTFQRNEGFFHLSPDNNIDEIGVSFYKIRFSCQNLNANIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE 194          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|553185727|ref|XP_005854297.1| (hypothetical protein NGA_2080720, partial [Nannochloropsis gaditana CCMP526] >gi|553190357|ref|XP_005855173.1| hypothetical protein NGA_2080710, partial [Nannochloropsis gaditana CCMP526] >gi|422293887|gb|EKU21187.1| hypothetical protein NGA_2080710, partial [Nannochloropsis gaditana CCMP526] >gi|422294763|gb|EKU22063.1| hypothetical protein NGA_2080720, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 185.652 bits (470), Expect = 9.194e-58
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:  102 SCQNLNANIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE 194
            SCQNLNANIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE
Sbjct:    1 SCQNLNANIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE 93          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|299471097|emb|CBN78956.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.3958 bits (163), Expect = 2.558e-11
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0
Query:  122 LEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARW 183
            + PSP INY+FVAGSY + SL+ + L        V +V+G W+  APF P L W+L++R++W
Sbjct:   20 MTPSPGINYNFVAGSYLVCSLILVVLLALDKFLHVEAVEGSWVVFAPFLPCLAWALVIRSKW 81          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|695391156|ref|XP_009519938.1| (hypothetical protein PHYSODRAFT_482848 [Phytophthora sojae] >gi|348684835|gb|EGZ24650.1| hypothetical protein PHYSODRAFT_482848 [Phytophthora sojae])

HSP 1 Score: 65.0846 bits (157), Expect = 9.989e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
Query:  120 SVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARW 183
             V  PSP+INY+FVAG Y   + LC+ L+V  L F    ++G++I L PF P  +WSL+VR RW
Sbjct:    2 GVFTPSPTINYNFVAGVYAFFTALCILLSV--LHFYTPQLEGFYIVLVPFVPCFLWSLVVRHRW 63          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|1214706519|gb|OWZ18052.1| (hypothetical protein PHMEG_0007923 [Phytophthora megakarya])

HSP 1 Score: 64.3142 bits (155), Expect = 1.795e-10
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0
Query:  120 SVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARW 183
             V +PSP+INYDFV G Y   + + + LAV  L F  S V+G++I L PF P  +WSL+VR RW
Sbjct:    2 EVFKPSPTINYDFVVGVYAFFTAVFVLLAV--LHFYTSQVEGFYIVLVPFVPCFLWSLVVRHRW 63          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|953495959|emb|CEG42855.1| (hypothetical protein PHALS_14664 [Plasmopara halstedii])

HSP 1 Score: 62.7734 bits (151), Expect = 6.477e-10
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0
Query:  120 SVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARW-HLALESKTKVE 194
             VL PSP+INY FVAG Y   ++LC  L V  L F    V+G+++ L PF P   WSL VR RW  LA E   +++
Sbjct:    2 KVLTPSPAINYTFVAGVYAFFTVLCAVLLV--LHFYTPQVEGFYVVLVPFVPCFFWSLAVRHRWLQLANEDADEIK 75          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|813225462|ref|XP_012211808.1| (hypothetical protein SPRG_16907 [Saprolegnia parasitica CBS 223.65] >gi|641522166|gb|KDO17482.1| hypothetical protein SPRG_16907 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 60.8474 bits (146), Expect = 3.424e-9
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 0
Query:  120 SVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTKVE 194
            ++  P+ +INYDFVAG Y + +LL L L V  L     +V+G++I +APF P L+WSL+VR  W L LE K K E
Sbjct:    4 ALFAPAETINYDFVAGMYGLFTLLALVLYV--LQHYTDAVEGFYIVMAPFAPCLLWSLVVRRNW-LRLE-KPKTE 74          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|669136674|ref|XP_008603905.1| (hypothetical protein SDRG_00215 [Saprolegnia diclina VS20] >gi|530744240|gb|EQC42482.1| hypothetical protein SDRG_00215 [Saprolegnia diclina VS20])

HSP 1 Score: 60.4622 bits (145), Expect = 3.885e-9
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  120 SVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTK 192
            ++  P+ +INYDFVAG Y + +LL + L V  L     +V+G++I +APF P L+WSL+VR  W    ++KT 
Sbjct:    4 NLFAPAETINYDFVAGMYGLFTLLAIVLYV--LQHYTDAVEGFYIVMAPFAPCLLWSLVVRRNWLRLEKAKTD 74          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|301121901|ref|XP_002908677.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099439|gb|EEY57491.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 58.9214 bits (141), Expect = 2.122e-8
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0
Query:  122 LEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARW 183
              PSP+INY+FVAG Y   + LC+ L+V  L F    ++G++I L PF P   WSL+VR  W
Sbjct:    4 FTPSPTINYNFVAGIYAFFTALCVLLSV--LHFYTPKLEGFYIVLVPFVPCFFWSLVVRHIW 63          
BLAST of EWM28605.1 vs. NCBI_GenBank
Match: gi|675212737|ref|XP_008915253.1| (hypothetical protein PPTG_18835 [Phytophthora parasitica INRA-310] >gi|566007956|gb|ETI30867.1| hypothetical protein F443_22054 [Phytophthora parasitica P1569] >gi|567945463|gb|ETK71274.1| hypothetical protein L915_21462 [Phytophthora parasitica] >gi|567974055|gb|ETL24702.1| hypothetical protein L916_21326 [Phytophthora parasitica] >gi|568003567|gb|ETL77915.1| hypothetical protein L917_21182 [Phytophthora parasitica] >gi|568033502|gb|ETM31208.1| hypothetical protein L914_21192 [Phytophthora parasitica] >gi|568084434|gb|ETM99363.1| hypothetical protein PPTG_18835 [Phytophthora parasitica INRA-310] >gi|570311639|gb|ETO59587.1| hypothetical protein F444_22073 [Phytophthora parasitica P1976] >gi|570935437|gb|ETP00694.1| hypothetical protein F441_21949 [Phytophthora parasitica CJ01A1] >gi|570965707|gb|ETP28826.1| hypothetical protein F442_21918 [Phytophthora parasitica P10297])

HSP 1 Score: 58.9214 bits (141), Expect = 2.332e-8
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0
Query:  120 SVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARW 183
             +  PSP+INY+FVAG Y   + LC  L+V  L F    ++G++I L PF P   WS +VR  W
Sbjct:    2 GLFTPSPTINYNFVAGVYAFFTALCAVLSV--LHFYTPQLEGFYIVLVPFVPCFFWSFVVRHSW 63          
The following BLAST results are available for this feature:
BLAST of EWM28605.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111023|gb|EWM28605.1|2.112e-140100.00hypothetical protein Naga_100009g105 [Nannochlorop... [more]
gi|553185727|ref|XP_005854297.1|9.194e-58100.00hypothetical protein NGA_2080720, partial [Nannoch... [more]
gi|299471097|emb|CBN78956.1|2.558e-1145.16conserved unknown protein [Ectocarpus siliculosus][more]
gi|695391156|ref|XP_009519938.1|9.989e-1148.44hypothetical protein PHYSODRAFT_482848 [Phytophtho... [more]
gi|1214706519|gb|OWZ18052.1|1.795e-1050.00hypothetical protein PHMEG_0007923 [Phytophthora m... [more]
gi|953495959|emb|CEG42855.1|6.477e-1046.05hypothetical protein PHALS_14664 [Plasmopara halst... [more]
gi|813225462|ref|XP_012211808.1|3.424e-948.00hypothetical protein SPRG_16907 [Saprolegnia paras... [more]
gi|669136674|ref|XP_008603905.1|3.885e-942.47hypothetical protein SDRG_00215 [Saprolegnia dicli... [more]
gi|301121901|ref|XP_002908677.1|2.122e-846.77conserved hypothetical protein [Phytophthora infes... [more]
gi|675212737|ref|XP_008915253.1|2.332e-843.75hypothetical protein PPTG_18835 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2059rna2059Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications