EWM28640.1, cds2036 (CDS) Nannochloropsis gaditana

Overview
NameEWM28640.1
Unique Namecds2036
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:761373..761607 -
Alignment locationCM002458.1:760901..761255 -
Alignment locationCM002458.1:760633..760687 -
Alignment locationCM002458.1:760385..760552 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28640.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100182g7.950.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:761373..761607 -
CM002458.1supercontigCM002458.1:760901..761255 -
CM002458.1supercontigCM002458.1:760633..760687 -
CM002458.1supercontigCM002458.1:760385..760552 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR008984SMAD_FHA_domain
IPR000253FHA_dom
Homology
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|585111059|gb|EWM28640.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MDVENEARAGSSVGVSDLKVMGDPSLASQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLKDRPGVCWADRSRQRLEQGGERGLSPAQREGVQPVIIPELDRCTIGKDKQREEGQE 270
            MDVENEARAGSSVGVSDLKVMGDPSLASQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLKDRPGVCWADRSRQRLEQGGERGLSPAQREGVQPVIIPELDRCTIGKDKQREEGQE
Sbjct:    1 MDVENEARAGSSVGVSDLKVMGDPSLASQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLKDRPGVCWADRSRQRLEQGGERGLSPAQREGVQPVIIPELDRCTIGKDKQREEGQE 270          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|299471773|emb|CBN76994.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.5666 bits (192), Expect = 7.719e-13
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 0
Query:  119 VILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVL 214
            V L+++ GPY G+VF +   +     +VGRSTGKK K HG S+ +D EVS  HG F   +GG+V Y D GSTNG+ ++G  +E ++   V  G  L
Sbjct:  391 VALSISGGPYDGSVFEITVEEDGDARLVGRSTGKKFKNHGISLRRDSEVSITHGMF-MNSGGRVTYMDNGSTNGTEVDGEWVEPKIAYGVVAGSTL 485          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|1173943176|gb|OQR92061.1| (hypothetical protein ACHHYP_04111 [Achlya hypogyna])

HSP 1 Score: 70.4774 bits (171), Expect = 2.005e-11
Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 0
Query:  110 GPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFV-VGRSTGKKVKEH-GASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVP 205
            GPP    L V++T T G Y G  F L  S        +GRS+GKK K   G S+P+DPEVST H        GKV + D+ STNG+ IN   L+ R P
Sbjct:   34 GPPRQ--LKVMVTCTKGYYQGQTFELHLSLDTNPICHLGRSSGKKYKSPLGLSLPKDPEVSTTHAELRLSDEGKVYFTDVNSTNGTTINDKALKPRKP 129          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|698781585|ref|XP_009823836.1| (hypothetical protein H257_02047 [Aphanomyces astaci] >gi|574121560|gb|ETV87037.1| hypothetical protein H257_02047 [Aphanomyces astaci])

HSP 1 Score: 72.4034 bits (176), Expect = 2.588e-11
Identity = 56/192 (29.17%), Postives = 88/192 (45.83%), Query Frame = 0
Query:   31 QTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIM-GMVQGNTVGPTSSDAG-------DSGASTSTATGNVPARSVAASTGPPGSTF---LTVILTVTDGPYAGTVFRLVQSKGRKEFV-VGRSTGKKVKEH-GASMPQDPEVSTVHGRFECRAGGKVMY-EDLGSTNGSFINGACLEERVPTRV 208
            QT+ EYL+   +  + +L    +  +   + E  + K +I   + +G    P++  +         S     T   +      AAS+  P  T+    T+ +  T G Y+G  F LV S        +GRS+GKK K   G S+P+DPE+ST H      +    +Y  D  STNG+ +NG  L+ RVP R+
Sbjct:   54 QTMIEYLEAQRNLALHNLQTQRDKALAQFREEAAQAKKKIFDSLAEGKEEAPSADSSSLSHEPPLPSAVKDETQLQHQTTSPAAASSSKPQRTYGEKKTIHIACTSGVYSGQHFTLVLSTDVNRVCHIGRSSGKKYKAPLGLSLPKDPEISTTHAEMRWSSENDHIYLADQNSTNGTKLNGRNLKARVPVRL 245          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|1210530741|dbj|GAX10692.1| (hypothetical protein FisN_14Lh207 [Fistulifera solaris])

HSP 1 Score: 70.4774 bits (171), Expect = 4.541e-11
Identity = 60/201 (29.85%), Postives = 90/201 (44.78%), Query Frame = 0
Query:   20 VMGDPSLASQDQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMG----MVQGNTVGPTSSDAGDS-GASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFVVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLK 215
            ++ D    +   TVE+ L     Q +   +  AE  +K LQ ELE G  E+      MV+       S++A D  GAS                         T+ + +  G +AG+ F  V  K  K  ++GRS GKK K++G S+  D EVST HG+F     G   + D GS+NG+ I    ++  VP  ++ G  +K
Sbjct:    5 LLNDVPFPTGKSTVEDALNFVLQQALAKTDKKAEMALKVLQQELEDGVRELYNCHEQMVENCENSKPSTEAKDKKGASHKD----------------------TLKIDIISGEHAGSSF-FVTPKPNKPCLLGRSKGKKFKQNGVSLCHDLEVSTTHGKFTVE-NGTFYFTDTGSSNGTLIRDEDVQVDVPYPLEDGIEMK 181          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|673023066|ref|XP_008865494.1| (hypothetical protein H310_03423 [Aphanomyces invadans] >gi|574478722|gb|ETW05717.1| hypothetical protein H310_03423 [Aphanomyces invadans])

HSP 1 Score: 71.633 bits (174), Expect = 4.701e-11
Identity = 59/191 (30.89%), Postives = 90/191 (47.12%), Query Frame = 0
Query:   31 QTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMG-MVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGST---------FLTVILTVTDGPYAGTVFRLVQS-KGRKEFVVGRSTGKKVKE-HGASMPQDPEVSTVHGRFECRAGGKVMY-EDLGSTNGSFINGACLEERVPTRV 208
            QTV E+L+    Q V  +    E LI   + E  + K +I+  + +G+ +  + +D  D   +   +      R V  S    G+T           T+ +  T G Y+G  F LV +    +   +GRS+GKK K  HG S+P+DPE+ST H      A    +Y  D  STNG+ +NG  L+ RV  R+
Sbjct:   55 QTVMEFLEAQRDQAVQTIRTRGEELITAFREEAAQAKKKILASLSEGSELRSSPTD--DITLTQEPSLVADVKREVKQSVDVLGTTVHERRSYGEMKTIHIVCTGGVYSGQRFTLVLAMDANRTCHIGRSSGKKYKAPHGLSLPKDPEISTSHAELRWNADDDHIYITDQNSTNGTKLNGRNLKSRVAVRL 243          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|301120348|ref|XP_002907901.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102932|gb|EEY60984.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 70.0922 bits (170), Expect = 5.182e-11
Identity = 55/185 (29.73%), Postives = 79/185 (42.70%), Query Frame = 0
Query:   33 VEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRL-VQSKGRKEFVVGRSTGKKVKE-HGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVPTRVQTGDVLK 215
            V+++L   C      L   A+     L+ E+E GK  ++             DA ++        GN   R+             T+ +    GPY G  F + V  K      VGRSTG+K +   G SMP+D E+ST H   +    GKV + D  STNGS I+   LE +VP  + T   +K
Sbjct:    4 VQDFLLRDCKASSKKLVEQAKMRAAELRQEMEEGKKALL-------------DALEAEKENLDEDGNAIPRA------------FTISVRSITGPYKGRKFSMEVDVKRHSSCFVGRSTGRKYRSPRGLSMPKDSELSTTHAEIKMETSGKVFFIDSESTNGSRIDDVGLEPKVPYELTTSKPIK 163          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|813112970|ref|XP_012195298.1| (hypothetical protein SPRG_19103 [Saprolegnia parasitica CBS 223.65] >gi|641540504|gb|KDO34286.1| hypothetical protein SPRG_19103 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.707 bits (169), Expect = 8.504e-11
Identity = 50/178 (28.09%), Postives = 77/178 (43.26%), Query Frame = 0
Query:   30 DQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEFV-VGRSTGKKVK-EHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEERVP 205
            +QTV E+L  +  + +  + AH +  I   + E ++ +  +   V                    T   +       A   PP    +TV    TDG Y    F+L+ +      + +GRS+GKK K  HG S+P+DPEVST H        GKV   D+ STNG+ +N   ++   P
Sbjct:   22 NQTVSEFLTTNLDEAIAKVEAHGKKTIAKFRKEAKKARENLEAAVD------------------LTVPDDDAVVDDEAKKAPPRRYNVTV--QCTDGFYKNQQFKLLLALDTNPVIHIGRSSGKKYKLPHGLSLPKDPEVSTTHAELRLGDDGKVYITDVNSTNGTSVNDNPIKPHKP 179          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|635366751|emb|CCI44987.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 69.3218 bits (168), Expect = 1.265e-10
Identity = 51/175 (29.14%), Postives = 75/175 (42.86%), Query Frame = 0
Query:   31 QTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTS-SDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLV------QSKGRKEFVVGRSTGKKVKE-HGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFING 197
            Q+VEEY++  C++    +    E   + L+      K +I+   + +     S SD  D                              +++    GPY G  F L       QS+     ++GRSTGKK K   G S+P+D E+ST H  F     GK+ + DL STNGSF+NG
Sbjct:   27 QSVEEYIQAECAKQCKVIEKEVEEKCRELRQVFLDSKQKILHASEADKENEQSVSDGYD------------------------------LMVHCQSGPYRGKDFHLKLHQSANQSQESAVCLIGRSTGKKFKPPLGISLPKDSEISTTHAEFRLDPFGKIYFTDLDSTNGSFVNG 171          
BLAST of EWM28640.1 vs. NCBI_GenBank
Match: gi|1173960496|gb|OQS06616.1| (hypothetical protein THRCLA_20335 [Thraustotheca clavata])

HSP 1 Score: 69.3218 bits (168), Expect = 1.839e-10
Identity = 51/176 (28.98%), Postives = 77/176 (43.75%), Query Frame = 0
Query:   30 DQTVEEYLKVHCSQLVGDLNAHAESLIKNLQHELERGKAEIMGMVQGNTVGPTSSDAGDSGASTSTATGNVPARSVAASTGPPGSTFLTVILTVTDGPYAGTVFRLVQSKGRKEF-VVGRSTGKKVK-EHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFINGACLEER 203
            + TV EYL    ++ V  ++AH +  I+    E ++ K          T+     +  D G S        P + +             V +  T G Y+G  F++  S        +GRS+GKK K   G S+P+DPEVST H        GK+   D+ STNG+ ING  ++ R
Sbjct:   39 NMTVREYLTKCLNEAVEKVDAHGKKAIEKFHAEADKAK---------KTLETYMIETEDKGESEEVEDKEEPLKYI-------------VKVKCTKGYYSGQEFKINLSIEDNPICYIGRSSGKKYKLPKGLSLPKDPEVSTTHAELRLSTDGKITITDVNSTNGTIINGTTIKPR 192          
The following BLAST results are available for this feature:
BLAST of EWM28640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111059|gb|EWM28640.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|299471773|emb|CBN76994.1|7.719e-1343.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173943176|gb|OQR92061.1|2.005e-1143.88hypothetical protein ACHHYP_04111 [Achlya hypogyna... [more]
gi|698781585|ref|XP_009823836.1|2.588e-1129.17hypothetical protein H257_02047 [Aphanomyces astac... [more]
gi|1210530741|dbj|GAX10692.1|4.541e-1129.85hypothetical protein FisN_14Lh207 [Fistulifera sol... [more]
gi|673023066|ref|XP_008865494.1|4.701e-1130.89hypothetical protein H310_03423 [Aphanomyces invad... [more]
gi|301120348|ref|XP_002907901.1|5.182e-1129.73conserved hypothetical protein [Phytophthora infes... [more]
gi|813112970|ref|XP_012195298.1|8.504e-1128.09hypothetical protein SPRG_19103 [Saprolegnia paras... [more]
gi|635366751|emb|CCI44987.1|1.265e-1029.14unnamed protein product [Albugo candida][more]
gi|1173960496|gb|OQS06616.1|1.839e-1028.98hypothetical protein THRCLA_20335 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2044rna2044Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications