EWM28659.1, cds2015 (CDS) Nannochloropsis gaditana

Overview
NameEWM28659.1
Unique Namecds2015
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:720067..720184 -
Alignment locationCM002458.1:718877..719835 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28659.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100177g3.1016.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:720067..720184 -
CM002458.1supercontigCM002458.1:718877..719835 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|585111080|gb|EWM28659.1| (uncharacterized protein Naga_100177g3 [Nannochloropsis gaditana])

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query:    1 MPMARFSRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEERDGGGGRASCEQGAVEGEGSVRRGREEKEDADSQMHVAGENEDSASSAGGGPADAGVSGSVGQLPFSLSTSPVQQQQQQQRQQQQQERQEQPGARLGEPQKCSEEDEGGEERGWDSDVSICGDGASSSSSCTLFDSEVEDIEERHVREGREWGIVQAQARGEAFLTSGEGMPPRKRARASWTS 358
            MPMARFSRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEERDGGGGRASCEQGAVEGEGSVRRGREEKEDADSQMHVAGENEDSASSAGGGPADAGVSGSVGQLPFSLSTSPVQQQQQQQRQQQQQERQEQPGARLGEPQKCSEEDEGGEERGWDSDVSICGDGASSSSSCTLFDSEVEDIEERHVREGREWGIVQAQARGEAFLTSGEGMPPRKRARASWTS
Sbjct:    1 MPMARFSRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEERDGGGGRASCEQGAVEGEGSVRRGREEKEDADSQMHVAGENEDSASSAGGGPADAGVSGSVGQLPFSLSTSPVQQQQQQQRQQQQQERQEQPGARLGEPQKCSEEDEGGEERGWDSDVSICGDGASSSSSCTLFDSEVEDIEERHVREGREWGIVQAQARGEAFLTSGEGMPPRKRARASWTS 358          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|298711329|emb|CBJ32475.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 199.519 bits (506), Expect = 1.792e-57
Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 0
Query:    6 FSRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAAC 168
              RL +EL++L ++PPPGV AWPVD+  ++   A I+GPE TPY  G F LEL++  RYPFEPP VRF+TP++HPN+D  GRICLD+LK +P G+W PS+N+PTLLTT+RLL+AHPN DDGL P+ T L+ ++   F   AR H  ++A  +  SP    AA 
Sbjct:    6 LVRLGKELKMLTDEPPPGVCAWPVDDC-ITHLQAQIQGPEDTPYERGTFLLELKIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWAPSMNVPTLLTTIRLLMAHPNGDDGLMPDITELFLKNPSRFADVARAHVEEHARQDKPSPATGKAAA 167          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|698798960|ref|XP_009832509.1| (hypothetical protein H257_08368 [Aphanomyces astaci] >gi|574112680|gb|ETV78172.1| hypothetical protein H257_08368 [Aphanomyces astaci])

HSP 1 Score: 192.2 bits (487), Expect = 3.050e-56
Identity = 86/170 (50.59%), Postives = 117/170 (68.82%), Query Frame = 0
Query:    7 SRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEER 176
            +R+ +E+E+L NDPP G+ AWP D   L    A I+GPE TPY  G+F L + +  RYPFEPP V+F+TP+FHPN+D+ GRICLD+LK QP+G+W PS+N+ TLLTT+RLL+  PN DDGL PE T L++++   F  +A   TAQ+A    ++P  AL A    E E +
Sbjct:    6 ARMRKEMEMLENDPPHGICAWPKDN-KLDELEAQIQGPEGTPYEKGIFLLSITIPERYPFEPPKVQFVTPIFHPNIDNAGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMTDPNPDDGLMPEITDLFKQNHALFVSKATAMTAQHANASHSTPARALHAAAHNEDESK 174          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|1173942281|gb|OQR91306.1| (ubiquitin-conjugating enzyme E2 T-like [Thraustotheca clavata])

HSP 1 Score: 192.2 bits (487), Expect = 3.285e-56
Identity = 87/148 (58.78%), Postives = 113/148 (76.35%), Query Frame = 0
Query:    7 SRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYA 154
            SR+ +ELE+L NDPP GV AW +DE  L    A I+GPE TPY  G+F LE+++  RYPFEPP V FLTP+FHPN+D+ GRICLD+LK QP+G+W PS+N+ TLLTT+RLL+A PN DDGL PE T L++++   F  +A+E TAQ+A
Sbjct:    6 SRMRKELEMLENDPPHGVCAWTIDE-KLDDLQAQIQGPEGTPYENGVFLLEIKIPERYPFEPPKVHFLTPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEITDLFKQNHALFVTKAKEMTAQHA 152          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|813180573|ref|XP_012206095.1| (hypothetical protein SPRG_09951 [Saprolegnia parasitica CBS 223.65] >gi|641528945|gb|KDO23143.1| hypothetical protein SPRG_09951 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 188.734 bits (478), Expect = 5.315e-55
Identity = 88/164 (53.66%), Postives = 115/164 (70.12%), Query Frame = 0
Query:    7 SRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGE-ATSPGEALAACL 169
            SR+ +ELE+L  DPP G+ AW VD+  L    A I+GPE TPY  G+F LE++V  RYPFEPP V F TP+FHPN+D+ GRICLD+LK QP+G+W PS+N+ TLLTT+RLL+A PN DDGL PE T LY+++   F  +A+E TAQ+A  +    P      C+
Sbjct:    6 SRMRKELEMLETDPPHGICAWSVDD-KLDDLQAQIQGPEGTPYENGVFLLEIKVPERYPFEPPKVHFTTPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEITDLYKQNHALFVTKAKEMTAQHATAQFVIKPAATPKVCI 168          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|669141714|ref|XP_008606419.1| (hypothetical protein SDRG_02601 [Saprolegnia diclina VS20] >gi|530741703|gb|EQC39945.1| hypothetical protein SDRG_02601 [Saprolegnia diclina VS20])

HSP 1 Score: 187.963 bits (476), Expect = 1.204e-54
Identity = 85/151 (56.29%), Postives = 112/151 (74.17%), Query Frame = 0
Query:    7 SRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGE 157
            SR+ +ELE+L  DPP G+ AW VD+  L    A I+GPE TPY  G+F LE++V  RYPFEPP V F TP+FHPN+D+ GRICLD+LK QP+G+W PS+N+ TLLTT+RLL+A PN DDGL PE T L++++   F  +A+E TAQ+A  +
Sbjct:    6 SRMRKELEMLETDPPHGICAWSVDD-KLDDLQAQIQGPEGTPYENGVFLLEIKVPERYPFEPPKVHFTTPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEITDLFKQNHELFVTKAKEMTAQHATAQ 155          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|1173945748|gb|OQR94341.1| (ubiquitin-conjugating enzyme E2T-like [Achlya hypogyna])

HSP 1 Score: 187.578 bits (475), Expect = 1.548e-54
Identity = 89/172 (51.74%), Postives = 120/172 (69.77%), Query Frame = 0
Query:    7 SRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEERDG 178
            SR+ +ELE+L +DPP G+ AW VD+  L    A I+GPE TPY  G+F LE+++  RYPFEPP V F+TP+FHPN+D+ GRICLD+LK QP+G+W PS+N+ TLLTT+RLL+A PN DDGL PE T L++++   F  +A+E T Q+A  +      A  A L  EA + D 
Sbjct:    6 SRMRKELEMLESDPPHGICAWSVDD-KLDDLQAQIQGPEGTPYENGVFLLEIKIPERYPFEPPKVHFITPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEITDLFKQNHAHFVTKAKEMTTQHAKAQFDVKRSAKPA-LPSEAHDDDS 175          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|953500931|emb|CEG37964.1| (ubiquitin-conjugating enzyme e2 t-like [Plasmopara halstedii])

HSP 1 Score: 186.422 bits (472), Expect = 5.412e-54
Identity = 83/147 (56.46%), Postives = 109/147 (74.15%), Query Frame = 0
Query:    8 RLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYA 154
            R+ +E+ +L +DPP GV+AWP D+  L R  A I GPE +PY  GLF LE+++  RYPFEPP VRFLTP++HPN+DD GRICLD+LK QP+G+W PS+NI TLLTT+RLL+A PNADDGL P+   +++ +   F   A E T Q+A
Sbjct:    4 RMRKEIAMLESDPPFGVSAWPKDD-QLDRLEAQIMGPEGSPYERGLFNLEIDIPERYPFEPPKVRFLTPIYHPNIDDGGRICLDTLKMQPKGSWLPSVNICTLLTTIRLLMAEPNADDGLMPDIADIFKHNRELFNSNASEMTLQHA 149          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|673037506|ref|XP_008872714.1| (hypothetical protein H310_08653 [Aphanomyces invadans] >gi|574471510|gb|ETV98517.1| hypothetical protein H310_08653 [Aphanomyces invadans])

HSP 1 Score: 186.037 bits (471), Expect = 6.469e-54
Identity = 83/153 (54.25%), Postives = 110/153 (71.90%), Query Frame = 0
Query:    7 SRLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEAT 159
            +R+ +E+E+L NDPP G+ AWP D   L    A I+GPE TPY  G+F L + +  RYPFEPP V+F TP+FHPN+D+ GRICLD+LK QP+G+W PS+N+ TLLTT+RLL+A PN DDGL PE T LY+++   F  +A   TAQ+A   +T
Sbjct:    6 ARMRKEMEMLENDPPHGICAWPKDN-KLDELEAQIQGPEGTPYEKGIFLLSILIPERYPFEPPKVQFTTPIFHPNIDNAGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEITDLYKQNHALFVSKATAMTAQHATTSST 157          
BLAST of EWM28659.1 vs. NCBI_GenBank
Match: gi|1214695546|gb|OWZ09299.1| (Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya])

HSP 1 Score: 186.422 bits (472), Expect = 1.073e-53
Identity = 82/175 (46.86%), Postives = 117/175 (66.86%), Query Frame = 0
Query:    8 RLARELELLRNDPPPGVAAWPVDEANLSRFHASIRGPESTPYAAGLFRLELEVSPRYPFEPPTVRFLTPVFHPNVDDRGRICLDSLKAQPQGAWTPSLNIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFEQRAREHTAQYAMGEATSPGEALAACLQGEAEERDGGGGR 182
            R+ +E+ +L +DPP GV+AWP D+  + R  A I GP+ +PY  G+F L++E+  RYPFEPP V F+TP++HPN+DD GRICLD+LK QP+G+W PS+NI TLLTT+RLL+A PNADDGL PE   +++ +   F ++A E T Q+A        ++      G    +D  G +
Sbjct:    7 RMRKEIAMLESDPPFGVSAWPKDD-QIDRLQAQILGPDGSPYEKGVFHLDIEIPERYPFEPPKVHFVTPIYHPNIDDAGRICLDTLKMQPKGSWLPSVNISTLLTTIRLLMAEPNADDGLMPEIADVFKHNRELFNKKATELTIQHAQDTKAHQRKSATDTTAGSGNLKDDDGEK 180          
The following BLAST results are available for this feature:
BLAST of EWM28659.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111080|gb|EWM28659.1|0.000e+0100.00uncharacterized protein Naga_100177g3 [Nannochloro... [more]
gi|298711329|emb|CBJ32475.1|1.792e-5753.37conserved unknown protein [Ectocarpus siliculosus][more]
gi|698798960|ref|XP_009832509.1|3.050e-5650.59hypothetical protein H257_08368 [Aphanomyces astac... [more]
gi|1173942281|gb|OQR91306.1|3.285e-5658.78ubiquitin-conjugating enzyme E2 T-like [Thraustoth... [more]
gi|813180573|ref|XP_012206095.1|5.315e-5553.66hypothetical protein SPRG_09951 [Saprolegnia paras... [more]
gi|669141714|ref|XP_008606419.1|1.204e-5456.29hypothetical protein SDRG_02601 [Saprolegnia dicli... [more]
gi|1173945748|gb|OQR94341.1|1.548e-5451.74ubiquitin-conjugating enzyme E2T-like [Achlya hypo... [more]
gi|953500931|emb|CEG37964.1|5.412e-5456.46ubiquitin-conjugating enzyme e2 t-like [Plasmopara... [more]
gi|673037506|ref|XP_008872714.1|6.469e-5454.25hypothetical protein H310_08653 [Aphanomyces invad... [more]
gi|1214695546|gb|OWZ09299.1|1.073e-5346.86Ubiquitin-conjugating enzyme E2 [Phytophthora mega... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2023rna2023Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications