EWM28669.1, cds1997 (CDS) Nannochloropsis gaditana

Overview
NameEWM28669.1
Unique Namecds1997
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:670951..671091 +
Alignment locationCM002458.1:671196..671336 +
Alignment locationCM002458.1:671404..671431 +
Alignment locationCM002458.1:671528..671668 +
Alignment locationCM002458.1:671826..671978 +
Alignment locationCM002458.1:672054..672190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28669.1
Producttranslation machinery-associated protein 22
Orig transcript idgnl|cribi|Naga_100002g16.4788.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:670951..671091 +
CM002458.1supercontigCM002458.1:671196..671336 +
CM002458.1supercontigCM002458.1:671404..671431 +
CM002458.1supercontigCM002458.1:671528..671668 +
CM002458.1supercontigCM002458.1:671826..671978 +
CM002458.1supercontigCM002458.1:672054..672190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR001950TIF_SUI1
Homology
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|585111092|gb|EWM28669.1| (translation machinery-associated protein 22 [Nannochloropsis gaditana])

HSP 1 Score: 507.294 bits (1305), Expect = 0.000e+0
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MLVYVPYAIFSFAVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKVGTRDKYNDQIIKHVVHKECQETKRKHRWRTPCVPAFTRQSVKPEV 246
            MLVYVPYAIFSFAVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKVGTRDKYNDQIIKHVVHKECQETKRKHRWRTPCVPAFTRQSVKPEV
Sbjct:    1 MLVYVPYAIFSFAVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKVGTRDKYNDQIIKHVVHKECQETKRKHRWRTPCVPAFTRQSVKPEV 246          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|553189311|ref|XP_005854975.1| (rna binding protein [Nannochloropsis gaditana CCMP526] >gi|422294086|gb|EKU21386.1| rna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.252 bits (970), Expect = 6.762e-131
Identity = 187/193 (96.89%), Postives = 187/193 (96.89%), Query Frame = 0
Query:    9 IFSFAVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKV 201
            I    VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAG NAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKET SGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKV
Sbjct:   41 ILYCGVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGVNAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETTSGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKV 233          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|299471536|emb|CBN80022.1| (RNA binding protein Tma22, putative [Ectocarpus siliculosus])

HSP 1 Score: 96.2857 bits (238), Expect = 9.400e-21
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 0
Query:    6 PYAIFSFAVCSIPPEYCIFNPPDLYADCLRW-QAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKV 201
            P  IF   VC +PPEYC F        C  W +A C     PE  +V++ +A L +     G     +     G      +G+            R     GKK  GG +           +V+I R+SRN+RK +TVV GLD++PD+K+KD AK +GK FA G+SVS   SG +E+VIQGDV+  L   LE    +
Sbjct:   33 PLTIFYCGVCGLPPEYCEFG--STAEACRAWAEANC-----PEVLAVEEGIAGLEVQGDAGGEAAGGAERAAGGEEEPKKKGKKV----------RIAKPGGKKAAGGEQ-----------RVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLETTLNI 201          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|821078629|gb|KKY32279.1| (putative translation machinery-associated protein 22 [Diaporthe ampelina])

HSP 1 Score: 95.1301 bits (235), Expect = 1.653e-20
Identity = 65/187 (34.76%), Postives = 89/187 (47.59%), Query Frame = 0
Query:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYK 200
            VC++PPEYC +        C  W  K H +L     S + + A        S   ++     RA                       E+D   K  K      K+ +  +   V I R+ RNKRK +T V+GL+++ DL LK VAK  GK FA+G+SV+ T SGG+EIV+QGDV D +   L EKYK
Sbjct:   21 VCTLPPEYCEYG--GTVKKCQEWLQKNHNDLYETIWSPEALAA--------STANLSVEAQKRA-----------------------EKDALKKTAKAEAAEQKQADKRAASVVTIKRIERNKRKYVTAVSGLEAF-DLDLKKVAKEFGKKFATGSSVTKTPSGGEEIVVQGDVSDEIEDFLNEKYK 173          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|1092157774|emb|CZT07194.1| (related to density-regulated protein, translation initiation factor [Rhynchosporium agropyri] >gi|1092180014|emb|CZS89247.1| related to density-regulated protein, translation initiation factor [Rhynchosporium commune])

HSP 1 Score: 92.0485 bits (227), Expect = 2.806e-19
Identity = 70/195 (35.90%), Postives = 92/195 (47.18%), Query Frame = 0
Query:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKVGTRDKYN 208
            VCS+PPEYC F              KC   L  E    DDM  +L   ++ +    + S D +  A                     E+D   K  K      ++  T    KV+I R+ RNKRK +T VTGL+++ DL  K VAK  GK FA+G+SV+   SGG+EIV+QGDV D +   L EKY V   D Y 
Sbjct:   20 VCSLPPEYCEFGGT---------VKKCQEWLKDED---DDMYERLWSDDALAAATSSLSVDAQKRA---------------------EKDAHKKALKAEAAEARQAATIKSSKVIIKRVERNKRKFVTTVTGLEAF-DLDNKKVAKEFGKKFATGSSVTKLASGGEEIVVQGDVSDEIEEFLMEKYPVIPEDNYE 180          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|1050848975|gb|OCW37788.1| (hypothetical protein DHEL01_13347 [Diaporthe helianthi])

HSP 1 Score: 90.8929 bits (224), Expect = 8.174e-19
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = 0
Query:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYK 200
            VC++PPEYC +        C  W  K H +L     S + + A        S   ++     RA                       E+D   K  K      K+ +  +   V I R+ RNKRK +T V GL+++ DL+LK VAK  GK FA+G+SV+ T SGG+EIV+QGDV + +   L +KYK
Sbjct:   21 VCTLPPEYCEYG--GTVKKCQEWLQKKHKDLYEAIWSAEALAA--------STANLSVEAQKRA-----------------------EKDAQKKTAKAEAAEQKQADKRAASVVTIKRIERNKRKYVTSVAGLEAF-DLELKKVAKEFGKKFATGSSVTKTPSGGEEIVVQGDVSNEIEEFLTDKYK 173          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|1092148227|emb|CZT45790.1| (related to density-regulated protein, translation initiation factor [Rhynchosporium secalis])

HSP 1 Score: 89.3521 bits (220), Expect = 3.155e-18
Identity = 69/195 (35.38%), Postives = 91/195 (46.67%), Query Frame = 0
Query:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKVGTRDKYN 208
            VCS+PPEYC F              KC   L  E     DM  +L   ++ +    + S D +  A                     E+D   K  K      ++  T    KV+I R+ RNKRK +T VTGL+++ DL  K VAK  GK FA+G+SV+   SGG+EIV+QGDV D +   L EKY V   D Y 
Sbjct:   20 VCSLPPEYCEFGGT---------VKKCQEWLKDEDG---DMYERLWSDDALAAATSSLSVDAQKRA---------------------EKDAHKKALKAEAAEARQAATIKSSKVIIKRVERNKRKFVTTVTGLEAF-DLDNKKVAKEFGKKFATGSSVTKLASGGEEIVVQGDVSDEIEEFLMEKYPVIPEDNYE 180          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|972139661|gb|KUI65910.1| (Translation machinery-associated protein 22 [Valsa mali])

HSP 1 Score: 88.5817 bits (218), Expect = 5.090e-18
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYK 200
            VC++PPEYC +        C  W  K H +L     S D + A        S   ++     RA                       E+D   K  K      K+ +  +   V+I R+ RNKRK +T V+GL+++ DL+LK V+K  GK FA+G+SV+ T SGG+EIV+QGDV D +   L EKYK
Sbjct:   21 VCTLPPEYCEYG--GTVKKCQEWLEKKHPDLYERIWSPDALAA--------STANLSVEAQKRA-----------------------EKDAIKKTAKAEAAAAKEADKRATSTVIIKRIERNKRKYVTAVSGLEAF-DLELKKVSKEFGKKFATGSSVTKTPSGGEEIVVQGDVSDEIEEFLLEKYK 173          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|1072983826|ref|XP_018442468.1| (PREDICTED: translation machinery-associated protein 22 [Raphanus sativus])

HSP 1 Score: 88.5817 bits (218), Expect = 5.401e-18
Identity = 66/195 (33.85%), Postives = 100/195 (51.28%), Query Frame = 0
Query:    6 PYAIFSFAVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGS-GGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKY 199
            P  +    VCS+P EYC F P   +  C  W  +   +L P      D+L + N   + +   K+ S G    GA+ A    +STG        G  + E GK+  GG   +KKKE     +V+I ++ RNKRK IT+V GL+ +  +KL D +K LGK FA+GASV    +  ++I +QGD+I  +   + + +
Sbjct:    7 PAKVLYCGVCSLPAEYCEFGPD--FGRCKPWLVQNAPDLYP------DLLKEANEKAADNVSDKLQSVGISSGGADGAPSSSQSTG-------GGTSKKEEGKRLPGGK--LKKKERQ---EVIIEKVVRNKRKCITIVKGLELF-GIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTW 180          
BLAST of EWM28669.1 vs. NCBI_GenBank
Match: gi|972125166|gb|KUI54084.1| (Translation machinery-associated protein 22 [Valsa mali var. pyri])

HSP 1 Score: 88.5817 bits (218), Expect = 5.831e-18
Identity = 65/187 (34.76%), Postives = 91/187 (48.66%), Query Frame = 0
Query:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKINSSGDGRAGANAAAGEGESTGEGEEDDGNGREEDECGKKKKGGPKGIKKKETASGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYK 200
            VC++PPEYC +        C  W  K H +L     S D + A        S   ++     RA                       E+D   K  K      K+ +  +   V+I R+ RNKRK +T V+GL+++ DL+LK V+K  GK FA+G+SV+ T SGG+EIV+QGDV D +   L EKYK
Sbjct:   21 VCTLPPEYCEYG--GTVKKCQEWLEKKHPDLYERIWSPDALAA--------STANLSVEAQKRA-----------------------EKDAIKKTAKAEAAAAKEADKRATSTVIIKRIERNKRKYVTAVSGLEAF-DLELKKVSKEFGKKFATGSSVTKTPSGGEEIVVQGDVSDEIEEFLLEKYK 173          
The following BLAST results are available for this feature:
BLAST of EWM28669.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111092|gb|EWM28669.1|0.000e+0100.00translation machinery-associated protein 22 [Nanno... [more]
gi|553189311|ref|XP_005854975.1|6.762e-13196.89rna binding protein [Nannochloropsis gaditana CCMP... [more]
gi|299471536|emb|CBN80022.1|9.400e-2135.53RNA binding protein Tma22, putative [Ectocarpus si... [more]
gi|821078629|gb|KKY32279.1|1.653e-2034.76putative translation machinery-associated protein ... [more]
gi|1092157774|emb|CZT07194.1|2.806e-1935.90related to density-regulated protein, translation ... [more]
gi|1050848975|gb|OCW37788.1|8.174e-1933.69hypothetical protein DHEL01_13347 [Diaporthe helia... [more]
gi|1092148227|emb|CZT45790.1|3.155e-1835.38related to density-regulated protein, translation ... [more]
gi|972139661|gb|KUI65910.1|5.090e-1834.76Translation machinery-associated protein 22 [Valsa... [more]
gi|1072983826|ref|XP_018442468.1|5.401e-1833.85PREDICTED: translation machinery-associated protei... [more]
gi|972125166|gb|KUI54084.1|5.831e-1834.76Translation machinery-associated protein 22 [Valsa... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2005rna2005Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications