EWM28713.1, cds1980 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|585111136|gb|EWM28713.1| (Ubiquitin-associated/translation elongation factor EF1B [Nannochloropsis gaditana]) HSP 1 Score: 759.214 bits (1959), Expect = 0.000e+0 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0 Query: 1 MPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYKSS 366 MPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYKSS Sbjct: 1 MPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYKSS 366
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|553194657|ref|XP_005856008.1| (ubiquitin thioesterase OTU1, partial [Nannochloropsis gaditana CCMP526] >gi|422293055|gb|EKU20356.1| ubiquitin thioesterase OTU1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 757.288 bits (1954), Expect = 0.000e+0 Identity = 365/366 (99.73%), Postives = 365/366 (99.73%), Query Frame = 0 Query: 1 MPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYKSS 366 MPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQ TSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYKSS Sbjct: 2 MPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQVTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYKSS 367
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|298712615|emb|CBJ33311.1| (OTU-like cysteine protease [Ectocarpus siliculosus]) HSP 1 Score: 288.886 bits (738), Expect = 1.683e-91 Identity = 166/409 (40.59%), Postives = 235/409 (57.46%), Query Frame = 0 Query: 1 MPLTLKVN-GPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVV----------------------------------KEDTQFTSGDKAPI-------PVTLPG-AQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGG----MTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGE 362 MPL LK+ G G SA L GL D TL +L+ I E G+ + +L+AGFPPKD++ D + SLGI +GSA+TV+ + T ++ AP P P Q ++DMGF A KALEV+ G++ A+++C++G P + S G TA R+MVRR+IDADNSCLFNAVGY + + R++G +LR++I + VR SP+VY E +LGK P++Y +WI DP WGGEIEL ILS+ + ++I++ +AY YGE + RR++++YDG+HYDALA AA + TAPES D+T F ++ + A VAA+LK Q+ D+ +L+CMVC K L+G++ AL HAR T HQNFG+ Sbjct: 1 MPLNLKITWGAGASSARLLGLDDGITLSELKGVIAEKSGIETHRAQLKAGFPPKDVSGSDADP-VVSLGITSGSALTVLERKAPPSPTPTPTQPSPSPPPPSSVPSPPSSAAARRTTSVSAAPPAPPQLQRRQEPAVDPALVQSLVDMGFEQGFAAKALEVAGGDINTAVEICMSG-------------DPAALGSDSGRAASTATAARIMVRRIIDADNSCLFNAVGYALRRKRKVGTELRQMITEAVRGSPEVYNEGILGKQPEEYCNWISDPKSWGGEIELSILSKKLVVMITVVDIQTNNAYSYGEEHGFGRRLFIIYDGIHYDALAEAA-NETAPESDDVTVFNPSEKEKEILAKTVAADLKARNQYTDMGNASLKCMVCFKLLAGEKGALEHARATGHQNFGQ 394
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|552811097|ref|XP_005843374.1| (hypothetical protein CHLNCDRAFT_28255 [Chlorella variabilis] >gi|307103007|gb|EFN51272.1| hypothetical protein CHLNCDRAFT_28255 [Chlorella variabilis]) HSP 1 Score: 218.779 bits (556), Expect = 1.925e-65 Identity = 107/228 (46.93%), Postives = 145/228 (63.60%), Query Frame = 0 Query: 144 PTAPPVPVTSHGGMTTA-----NRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSK---QAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEY 363 P AP ++ G TA +VRR+ID+DNSCLFNAVGY E++R++ P+LR++IAD V P + EAVLGK P +Y WI+DP +WGG IEL ILS++ G E+ A +I++ +YG+G YS R+ L+YDG+HYDALA+AA APE LD+T P ++ Q A +A + + R F D TLRC VC GL G++EA+ HA+ T H NF EY Sbjct: 70 PAAPSTASSAQQGAPTAVALADGTAVVRRIIDSDNSCLFNAVGYVTERSRKLAPRLRQVIADAVLADPFEWNEAVLGKEPAEYCRWIKDPNKWGGAIELSILSRHLGREIAAFDIQTTRVDIYGQGSGYSERVMLIYDGLHYDALAVAAFE-GAPEQLDVTVIPTSGTRTEMVMQGAKQLATKAQTARAFTDTANFTLRCGVCQIGLKGEKEAVEHAKTTGHTNFSEY 296
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|290982849|ref|XP_002674142.1| (predicted protein [Naegleria gruberi] >gi|284087730|gb|EFC41398.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 219.935 bits (559), Expect = 2.123e-65 Identity = 126/370 (34.05%), Postives = 203/370 (54.86%), Query Frame = 0 Query: 5 LKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAE-----LTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCME----KNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSR-RIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYK 364 +++ P + A L+G+ S+T+ L+ +I++ + ++QKL+ GFPP+++ Q +E L+ +G+++G ++ +V+E +++ S I++ + V ++ + II ES VP P V + A V+++RVID+DNSCLFNA YC+E + ++ P LR++I D + N P + EA+LG++PK Y +WI WGG +E+ ILSQ+Y V + ++ S VYGEG + +I LLYDG+HYDALA+ P PE LD+T PA D+ S AL + +L QF D TL+C+ C + + G++EA LHA++T H FGE K Sbjct: 2 IRIRLPASQMA-LRGVDFSSTVDWLKQQIQKESKIEPSKQKLKMGFPPQEIAGQQNQSEFNAKKLSDIGVKSGESL-IVEETSEYAS---------------IVNNSQPIVVE-----------DDDITPSSYKIIKPESYSDVPPRPH-SVGTDDSTLIAESVVIKRVIDSDNSCLFNAFAYCLEGCESRKKKRAPALRRVIRDWILNDPIQFNEAILGQSPKAYCEWIMKDNSWGGSLEIMILSQFYNIRVDSFDVTSNRRDVYGEGDPLIKGKILLLYDGIHYDALAINP-VPQGPEELDITILPADDDISSTKALELVKQLHNQHQFTDTATFTLKCLQCGEFIKGEKEATLHAKKTGHSKFGERK 341
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|693498456|emb|CEF99052.1| (Ubiquitin interacting motif [Ostreococcus tauri]) HSP 1 Score: 214.157 bits (544), Expect = 3.549e-63 Identity = 126/361 (34.90%), Postives = 193/361 (53.46%), Query Frame = 0 Query: 3 LTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQFTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEY 363 + L+V G A++ + D+AT+ L+ I + ++Q+ GFP + + D +A SLGI G I V + + P+ T+ G +++ E++ + + AL + + D + T+ V VTS VRRVI +DNSCLFNAV YC+E++ + +LR+++AD V ++E LGK+PK Y +WI P WGG++ELFILS+YY E+ A +I++ +YGEG+ Y+ RI ++YDG+HYDAL + A S D+T+ P G + A + E ++F D +LRC+VC KGL GQ EA+ HA+ T H NFGEY Sbjct: 1 MRLRVRTSDGAQAVVD-IADNATVGALKTAIARTTDIVESEQEWHFGFPARPVDATDFSASCASLGITNGETIAVSR--VTIENASTTPLGTTIEGDSTLVE------------ELAAMDEDEALARALAASMEDGANADASTS--VDVTSMHA--------VRRVIASDNSCLFNAVAYCVERSLKEATRLRRVVADAVAADAATFSEGFLGKSPKAYVEWITKPNSWGGQVELFILSKYYRVEIAAYDIQTERCDIYGEGEGYNDRIMVIYDGLHYDALVLHPVFGGADVSRDVTRVPPG--VALPAVQRLVREQHASKKFTDTANFSLRCLVCQKGLVGQAEAVAHAKSTGHANFGEY 334
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|695024048|ref|XP_009399222.1| (PREDICTED: ubiquitin thioesterase OTU1 [Musa acuminata subsp. malaccensis] >gi|695024050|ref|XP_009399223.1| PREDICTED: ubiquitin thioesterase OTU1 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 203.756 bits (517), Expect = 8.003e-61 Identity = 103/210 (49.05%), Postives = 135/210 (64.29%), Query Frame = 0 Query: 161 NRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPT--APESLDMTQFPAGDESS----KQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYK 364 + ++VRRVI +DNSCLFNAVGY ME ++ P LR++IA V + P YTEA LGK +Y WIQDP +WGG IEL ILS+YYG E+ A +I+S +YG+GK+Y R+ L+YDG+HYDALAM SP APE D T F + S + +L + + R + D TLRC VC GL+GQ+EA+ HA+ T H NF EY+ Sbjct: 2 DEIVVRRVIPSDNSCLFNAVGYVMEHDKTKAPYLRQVIAAVVASDPGKYTEAFLGKPNNEYCAWIQDPDKWGGAIELSILSEYYGREIAAYDIQSTRCDLYGQGKSYQERVMLIYDGLHYDALAM---SPFEGAPEEFDQTVFSIRSDRSIGPVENLSLNLVKDAHRKRSYTDTANFTLRCGVCQVGLTGQKEAIAHAQATGHVNFQEYR 208
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|1134893007|gb|OMJ90255.1| (hypothetical protein SteCoe_7463 [Stentor coeruleus]) HSP 1 Score: 205.682 bits (522), Expect = 1.786e-60 Identity = 108/279 (38.71%), Postives = 167/279 (59.86%), Query Frame = 0 Query: 91 PIPVTLPGAQQIIDMGFSVAVALKALEVSH----GEVENALDLCVNGIITDESLEHVPTAPPVPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCME-KNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYK 364 P+ T+ +Q I S+ A + L + N+ L +GII+ E++ + P+ +++ +VRR+I ADNSCLFN++ Y +E +N++ G LR +I+ + + PD Y + +LGK+ ++Y WI+ + WGG IEL ILS+YY + A+ I++AH ++G+ Y + IY++YDG+HYD LA +G APES D+T F AGD + Q AL++A ELK Q+ D+ TLRC +C GL G+ A+ HA++T HQNF EYK Sbjct: 20 PLTTTMSALRQEISTKTSIKPAYQELRKGYPPTVFTCPNSSLLIDSGIISGETITIEKLSNPIL----SQQDSSSLKLVRRIIAADNSCLFNSIAYALETRNKKSGTFLRNVISAYIESDPDTYNKTLLGKSNQEYVSWIEQESSWGGGIELSILSKYYQIMIGAVSIQTAHVDIFGQEDGYMKIIYVIYDGIHYDVLAKTSGDD-APESEDVTIFDAGDIETYQQALSIANELKIAHQYTDVGNFTLRCGICYIGLVGERGAIQHAQDTGHQNFVEYK 293
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|1026010150|ref|XP_016556785.1| (PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010152|ref|XP_016556786.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010154|ref|XP_016556787.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010156|ref|XP_016556788.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010158|ref|XP_016556789.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010160|ref|XP_016556790.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010162|ref|XP_016556791.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum] >gi|1026010164|ref|XP_016556792.1| PREDICTED: ubiquitin thioesterase OTU1 [Capsicum annuum]) HSP 1 Score: 202.216 bits (513), Expect = 3.086e-60 Identity = 100/205 (48.78%), Postives = 134/205 (65.37%), Query Frame = 0 Query: 164 MVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESS----KQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYK 364 +VRRVI +DNSCLFNAVGY M+ N+ P+LR++IA V P Y++A LGK K+Y DWI +P +WGG IEL IL+ YYG E+ A +I++ +YG+GKNY R+ L+YDG+HYDALAM+ + APE D T F + + ++ AL + E + R F D TLRC VC G+ GQ+EA+ HA+ T H NF EYK Sbjct: 5 IVRRVIPSDNSCLFNAVGYVMDHNKNKAPELRQVIAATVAGDPTKYSDAFLGKPNKEYCDWILNPDKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQGKNYQERVMLIYDGLHYDALAMSP-AEGAPEEFDQTIFTVQRDGTVGPAERLALNLVMEQQRKRSFTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYK 208
BLAST of EWM28713.1 vs. NCBI_GenBank
Match: gi|1025355121|ref|XP_016511246.1| (PREDICTED: ubiquitin thioesterase OTU1-like [Nicotiana tabacum]) HSP 1 Score: 201.83 bits (512), Expect = 4.454e-60 Identity = 98/205 (47.80%), Postives = 136/205 (66.34%), Query Frame = 0 Query: 164 MVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESS----KQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEYK 364 +VRRVI +DNSCLFNAVGY M+ +R P+LR++IA V + P Y++A LGK+ K+Y DWI +P +WGG IEL IL+ YYG E+ A +I++ +YG+GKNY R+ L+YDG+HYDALAM+ + APE D T F + + ++ AL + E + R + D TLRC VC G+ GQ+EA+ HA+ T H NF E+K Sbjct: 5 IVRRVIPSDNSCLFNAVGYVMDHDRNKAPELRQVIAATVASDPTKYSDAFLGKSNKEYCDWILNPEKWGGAIELSILTDYYGREIAAYDIQTTRCDLYGQGKNYQERVMLIYDGLHYDALAMSP-AEGAPEEFDQTIFTVQRDGTVGPAERLALNLVKEQQRKRSYTDTANFTLRCGVCQIGVVGQKEAVEHAQATGHVNFQEFK 208 The following BLAST results are available for this feature:
BLAST of EWM28713.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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