EWM28759.1, cds1963 (CDS) Nannochloropsis gaditana

Overview
NameEWM28759.1
Unique Namecds1963
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:593215..593850 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28759.1
Productpeptidase dimerization domain-containing protein
Orig transcript idgnl|cribi|Naga_100002g50.4878.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:593215..593850 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR011650Peptidase_M20_dimer
Homology
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|585111182|gb|EWM28759.1| (peptidase dimerization domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 429.483 bits (1103), Expect = 2.810e-152
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLKGPRGSTQRVASQAAESVGASVVDARAL 211
            MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLKGPRGSTQRVASQAAESVGASVVDARAL
Sbjct:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLKGPRGSTQRVASQAAESVGASVVDARAL 211          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|298707109|emb|CBJ29901.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 189.119 bits (479), Expect = 3.243e-55
Identity = 101/187 (54.01%), Postives = 125/187 (66.84%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDR-ADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLKGP 186
            M+R QKG+LK+RL   GV+CHSGYP LG SAIDPLV+ L  +K   WP +EELG TT+NIGL++GG AANALA  +EA ++FRLI  PE VL+ V+A   +    VEVI+ N PV L  L  +  DVA +NTDIAYF L  P  +A L GPGSI  AHS  E I + EL+ AV  Y++I    L  P
Sbjct:  188 MMRLQKGMLKVRLSCRGVACHSGYPHLGVSAIDPLVEVLHAIKHRAWPSSEELGETTVNIGLVEGGQAANALAEASEAIVMFRLIQEPEGVLDAVKAIAAEHDCAVEVISKNAPVSLEVLPDFEADVAAYNTDIAYFKL--PKGRALLYGPGSIHHAHSRIEKIGVTELKDAVEAYKKIAKSCLGRP 372          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|567995949|gb|ETL46075.1| (formiminoglutamate deiminase [Phytophthora parasitica] >gi|570957627|gb|ETP22606.1| formiminoglutamate deiminase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 192.586 bits (488), Expect = 1.091e-53
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  581 MSKMQKGVLKIQLTQKGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 761          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|568025193|gb|ETL99212.1| (formiminoglutamate deiminase [Phytophthora parasitica])

HSP 1 Score: 193.356 bits (490), Expect = 1.584e-53
Identity = 92/184 (50.00%), Postives = 126/184 (68.48%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L  +GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  680 MSKMQKGVLKIQLTQNGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 860          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|970636722|gb|KUF81122.1| (carboxypeptidase [Phytophthora nicotianae])

HSP 1 Score: 192.586 bits (488), Expect = 1.857e-53
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  644 MSKMQKGVLKIQLTQKGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 824          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|568055646|gb|ETM52390.1| (formiminoglutamate deiminase [Phytophthora parasitica])

HSP 1 Score: 192.586 bits (488), Expect = 2.614e-53
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  680 MSKMQKGVLKIQLTQKGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 860          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|675184955|ref|XP_008901362.1| (formiminoglutamate deiminase [Phytophthora parasitica INRA-310] >gi|568098581|gb|ETN13308.1| formiminoglutamate deiminase [Phytophthora parasitica INRA-310] >gi|570993185|gb|ETP50576.1| formiminoglutamate deiminase [Phytophthora parasitica P10297])

HSP 1 Score: 192.586 bits (488), Expect = 2.640e-53
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  680 MSKMQKGVLKIQLTQKGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 860          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|567967473|gb|ETK92648.1| (formiminoglutamate deiminase [Phytophthora parasitica])

HSP 1 Score: 192.586 bits (488), Expect = 2.804e-53
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  680 MSKMQKGVLKIQLTQKGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 860          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|570333515|gb|ETO81463.1| (formiminoglutamate deiminase [Phytophthora parasitica P1976])

HSP 1 Score: 192.586 bits (488), Expect = 2.860e-53
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+  WP  E+ G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R ++++ T+N PV L T+EGY T VACFNTDI YF+      +A+L+G GSI DAH   E I + +L+  V YY ++  RL++
Sbjct:  680 MSKMQKGVLKIQLTQKGVAAHSGYPHLGDSAIDPMIDVLYDLKKESWPTTEDYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVEMKLYTSNAPVHLTTVEGYDTGVACFNTDIPYFNF---DGKAYLVGAGSITDAHCPREFIKLDDLKSVVDYYFKLGKRLIE 860          
BLAST of EWM28759.1 vs. NCBI_GenBank
Match: gi|695426570|ref|XP_009529454.1| (hypothetical protein PHYSODRAFT_333917 [Phytophthora sojae] >gi|348675887|gb|EGZ15705.1| hypothetical protein PHYSODRAFT_333917 [Phytophthora sojae])

HSP 1 Score: 192.2 bits (487), Expect = 3.061e-53
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 0
Query:    1 MIRSQKGLLKLRLLSHGVSCHSGYPSLGKSAIDPLVDALQDLKRAHWPKNEELGATTLNIGLLKGGHAANALAAEAEATLVFRLITPPEQVLETVRATVGDRADVEVITANTPVQLNTLEGYATDVACFNTDIAYFDLREPTAQAFLMGPGSILDAHSDHEVIHIPELQRAVAYYEEILLRLLK 184
            M + QKG+LK++L   GV+ HSGYP LG SAIDP++D L DLK+ +WP  EE G T LNIGLL GG AANALA ++ A L+FRL+T P+ + + V   V  R  +++ T+N PV L T+EGY T VACFNTD+ YF+      +A+L+G GSI DAH   E I + +L+  V YY  +  RL++
Sbjct:  678 MSKMQKGVLKIQLTQEGVAAHSGYPHLGDSAIDPMIDVLYDLKKENWPTTEEYGNTDLNIGLLNGGQAANALAEQSSAMLMFRLVTEPDVIYKRVEEIVAGRVGMKLYTSNAPVHLTTVEGYETGVACFNTDVPYFNF---DGKAYLVGAGSITDAHCPREFIMLEDLKSVVDYYFTLGKRLIE 858          
The following BLAST results are available for this feature:
BLAST of EWM28759.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111182|gb|EWM28759.1|2.810e-152100.00peptidase dimerization domain-containing protein [... [more]
gi|298707109|emb|CBJ29901.1|3.243e-5554.01conserved unknown protein [Ectocarpus siliculosus][more]
gi|567995949|gb|ETL46075.1|1.091e-5350.00formiminoglutamate deiminase [Phytophthora parasit... [more]
gi|568025193|gb|ETL99212.1|1.584e-5350.00formiminoglutamate deiminase [Phytophthora parasit... [more]
gi|970636722|gb|KUF81122.1|1.857e-5350.00carboxypeptidase [Phytophthora nicotianae][more]
gi|568055646|gb|ETM52390.1|2.614e-5350.00formiminoglutamate deiminase [Phytophthora parasit... [more]
gi|675184955|ref|XP_008901362.1|2.640e-5350.00formiminoglutamate deiminase [Phytophthora parasit... [more]
gi|567967473|gb|ETK92648.1|2.804e-5350.00formiminoglutamate deiminase [Phytophthora parasit... [more]
gi|570333515|gb|ETO81463.1|2.860e-5350.00formiminoglutamate deiminase [Phytophthora parasit... [more]
gi|695426570|ref|XP_009529454.1|3.061e-5350.00hypothetical protein PHYSODRAFT_333917 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1968rna1968Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications