EWM28760.1, cds1934 (CDS) Nannochloropsis gaditana

Overview
NameEWM28760.1
Unique Namecds1934
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:520401..521173 -
Alignment locationCM002458.1:520169..520343 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28760.1
Producttranscription factor iiia
Orig transcript idgnl|cribi|Naga_100002g80.4879.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:520401..521173 -
CM002458.1supercontigCM002458.1:520169..520343 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
IPR013087Znf_C2H2/integrase_DNA-bd
IPR015880Znf_C2H2-like
Homology
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BLAST of EWM28760.1 vs. NCBI_GenBank
Match: gi|585111183|gb|EWM28760.1| (transcription factor iiia [Nannochloropsis gaditana])

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0 
Query:    1 MQSTREKQKVGYTPDVTGKVCKREENSHEMSRPHAPTLKSILYHGLNGIDEGGRRRAEEERCKDHGRDALMKGSAGSMGGSVAHGEPDAFCIDSRIDREIKRTDSILEVHRAPLREVFVEGEQRAECDQVTQGRHIRDEDSIQVRKQYRCDAPHCYRSFTERRNLAQQHRKAGHSDERPFFCIVMGCDKAFKYKCVLEKHMNSFHLDSSSMCRASKNIRIGEALSSEVMTEKLQEYNAPNTNKSVLRMLQAVDRSSTIERAYIRSGRGDRSFLHILRFSSFTLFTKTSFPDTDFHKPLAGIPFGDPKLQMANIGD 315
            MQSTREKQKVGYTPDVTGKVCKREENSHEMSRPHAPTLKSILYHGLNGIDEGGRRRAEEERCKDHGRDALMKGSAGSMGGSVAHGEPDAFCIDSRIDREIKRTDSILEVHRAPLREVFVEGEQRAECDQVTQGRHIRDEDSIQVRKQYRCDAPHCYRSFTERRNLAQQHRKAGHSDERPFFCIVMGCDKAFKYKCVLEKHMNSFHLDSSSMCRASKNIRIGEALSSEVMTEKLQEYNAPNTNKSVLRMLQAVDRSSTIERAYIRSGRGDRSFLHILRFSSFTLFTKTSFPDTDFHKPLAGIPFGDPKLQMANIGD
Sbjct:    1 MQSTREKQKVGYTPDVTGKVCKREENSHEMSRPHAPTLKSILYHGLNGIDEGGRRRAEEERCKDHGRDALMKGSAGSMGGSVAHGEPDAFCIDSRIDREIKRTDSILEVHRAPLREVFVEGEQRAECDQVTQGRHIRDEDSIQVRKQYRCDAPHCYRSFTERRNLAQQHRKAGHSDERPFFCIVMGCDKAFKYKCVLEKHMNSFHLDSSSMCRASKNIRIGEALSSEVMTEKLQEYNAPNTNKSVLRMLQAVDRSSTIERAYIRSGRGDRSFLHILRFSSFTLFTKTSFPDTDFHKPLAGIPFGDPKLQMANIGD 315
The following BLAST results are available for this feature:
BLAST of EWM28760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111183|gb|EWM28760.1|0.000e+0100.00transcription factor iiia [Nannochloropsis gaditan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1939rna1939Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications