EWM28709.1, cds1931 (CDS) Nannochloropsis gaditana

Overview
NameEWM28709.1
Unique Namecds1931
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:517832..518073 -
Alignment locationCM002458.1:517663..517746 -
Alignment locationCM002458.1:517388..517541 -
Alignment locationCM002458.1:517271..517338 -
Alignment locationCM002458.1:517030..517226 -
Alignment locationCM002458.1:516846..516952 -

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Properties
Property NameValue
Protein idEWM28709.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g83.4828.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:517832..518073 -
CM002458.1supercontigCM002458.1:517663..517746 -
CM002458.1supercontigCM002458.1:517388..517541 -
CM002458.1supercontigCM002458.1:517271..517338 -
CM002458.1supercontigCM002458.1:517030..517226 -
CM002458.1supercontigCM002458.1:516846..516952 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28709.1 vs. NCBI_GenBank
Match: gi|585111132|gb|EWM28709.1| (hypothetical protein Naga_100002g83 [Nannochloropsis gaditana])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0 
Query:    1 MSADVPDVSCSKSCPSRRTLHEYPMLMAVSILSPVRTQNLTPPVARSAMVSGTPSCSLSSIAVRPTIVRSFSRLSATLLISLGLMFEDLPVQRFSGDRPSLSPPLHSRRRPTLNLAINFKRYLLSSTTNQLIGSLLCELHQRFLIRTFGLVGQGILVIRISARILRKSSAGEPGAASLLRPSTRPINFALDRCTLKAHHILCKCSSFVAEDVLDLTQVCYNIAACLCRSIALFMVHAQILVDEVQMGISNFYKNGFYTDAINKSSSSRRSNNGICVLTTYRNC 283
            MSADVPDVSCSKSCPSRRTLHEYPMLMAVSILSPVRTQNLTPPVARSAMVSGTPSCSLSSIAVRPTIVRSFSRLSATLLISLGLMFEDLPVQRFSGDRPSLSPPLHSRRRPTLNLAINFKRYLLSSTTNQLIGSLLCELHQRFLIRTFGLVGQGILVIRISARILRKSSAGEPGAASLLRPSTRPINFALDRCTLKAHHILCKCSSFVAEDVLDLTQVCYNIAACLCRSIALFMVHAQILVDEVQMGISNFYKNGFYTDAINKSSSSRRSNNGICVLTTYRNC
Sbjct:    1 MSADVPDVSCSKSCPSRRTLHEYPMLMAVSILSPVRTQNLTPPVARSAMVSGTPSCSLSSIAVRPTIVRSFSRLSATLLISLGLMFEDLPVQRFSGDRPSLSPPLHSRRRPTLNLAINFKRYLLSSTTNQLIGSLLCELHQRFLIRTFGLVGQGILVIRISARILRKSSAGEPGAASLLRPSTRPINFALDRCTLKAHHILCKCSSFVAEDVLDLTQVCYNIAACLCRSIALFMVHAQILVDEVQMGISNFYKNGFYTDAINKSSSSRRSNNGICVLTTYRNC 283
[Close]
BLAST of EWM28709.1 vs. NCBI_GenBank
Match: gi|1091995858|ref|XP_018735016.1| (hypothetical protein AWJ20_795 [Sugiyamaella lignohabitans] >gi|1026310665|gb|ANB12539.1| hypothetical protein AWJ20_795 [Sugiyamaella lignohabitans])

HSP 1 Score: 69.707 bits (169), Expect = 1.064e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0 
Query:   18 RTLHEYPMLMAVSILSPVRTQNLTPPVARSAMVSGTPSCSLSSIAVRPTIVRSFSRLSAT 77
            R LHE PML+AVS LSPVRTQ+L P   R AM SGTPSC+LSS+AV P  V+  S+ SAT
Sbjct:   24 RRLHEKPMLIAVSTLSPVRTQSLIPASLRRAMDSGTPSCNLSSMAVPPMSVKLRSKASAT 83
The following BLAST results are available for this feature:
BLAST of EWM28709.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111132|gb|EWM28709.1|0.000e+0100.00hypothetical protein Naga_100002g83 [Nannochlorops... [more]
gi|1091995858|ref|XP_018735016.1|1.064e-1165.00hypothetical protein AWJ20_795 [Sugiyamaella ligno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1936rna1936Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications