EWM28798.1, cds1930 (CDS) Nannochloropsis gaditana

Overview
NameEWM28798.1
Unique Namecds1930
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:515801..516484 +
Alignment locationCM002458.1:516569..516637 +
Alignment locationCM002458.1:516771..516830 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28798.1
Productphospholipid-transporting atpase id
Orig transcript idgnl|cribi|Naga_100002g84.4917.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:515801..516484 +
CM002458.1supercontigCM002458.1:516569..516637 +
CM002458.1supercontigCM002458.1:516771..516830 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0004012phospholipid-translocating ATPase activity
GO:0005524ATP binding
GO:0000287magnesium ion binding
GO:0046872metal ion binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0015914phospholipid transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006539P-type_ATPase_IV
IPR008250ATPase_P-typ_transduc_dom_A
Homology
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|585111221|gb|EWM28798.1| (phospholipid-transporting atpase id [Nannochloropsis gaditana])

HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 MGFLMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYMSGPMEWTGKAANRHSFRDS 270
            MGFLMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYMSGPMEWTGKAANRHSFRDS
Sbjct:    1 MGFLMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYMSGPMEWTGKAANRHSFRDS 270          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|585103188|gb|EWM22623.1| (phospholipid-transporting atpase [Nannochloropsis gaditana])

HSP 1 Score: 206.068 bits (523), Expect = 8.165e-57
Identity = 108/250 (43.20%), Postives = 161/250 (64.40%), Query Frame = 0
Query:    4 LMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLL--DPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251
            L++LGTYT +F+ PLT ++TLFPL +VL ++M +E F DVKRH +D ETN    ++ S         +S++ +++ VG ++ V +KQ +PADM++L +SE++  CY+ETS+IDGETNLK+R+A          +   DPAD+       Q  V CELPN  I SF+G   + H++E             N+  P+D  N+LLRG+ +RNT+W +G+VVYTG+DTK+ +NSR APSKLS ++  VN  +Y+
Sbjct:   76 LLMLGTYTPLFDAPLTPYTTLFPLLVVLAVTMGKEGFEDVKRHIADRETNTAPVEMLSLEKPGEF--DSMQRQEIRVGRVVRVLDKQMVPADMILLTSSEAEGSCYVETSNIDGETNLKIRQAAKTAADGVGSMWQDDPADLHGW----QGTVECELPNSHIHSFSGV--LRHEKEG------------NRETPVDESNLLLRGSSVRNTKWVLGLVVYTGRDTKIVQNSREAPSKLSTVEHTVNNMLYL 305          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|585112151|gb|EWM29580.1| (putative phospholipid-transporting atpase ia isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 202.216 bits (513), Expect = 1.974e-55
Identity = 107/256 (41.80%), Postives = 157/256 (61.33%), Query Frame = 0
Query:    4 LMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWN----TGAAVTS----ESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251
            LML+GTY+  +E+PLT ++TL PL +VL I+M +EAF D+KRH +D +TNNR+ +V         GA        E VRWRD+ VG ++ V +++ +PAD+V+L +S++   CY+ETS+IDGETNLK++ A         P    A+    ++   A + CE PN +I S+TGT  +  K         P      + + +   N+LLRG+ LRNT+WA+G+ VYTG  TK+  NSR APSKLS I+V  N+ +Y+
Sbjct:  150 LMLIGTYSDFYESPLTPYTTLIPLCVVLTITMGKEAFEDLKRHTADQKTNNRIARVVRLERPGCRGAGGDENGGIEEVRWRDIGVGRVVQVRDREEIPADLVLLTSSDAGGNCYVETSNIDGETNLKIKEAARTAEDGGGPAFWKAE---ELQAWGAAMVCEAPNARIHSYTGTLTLLSK--------GPGE---RRRVAVSQANLLLRGSRLRNTQWALGLAVYTGAQTKIVMNSRTAPSKLSAIEVTTNRLLYL 391          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|299471195|emb|CBN79051.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 192.586 bits (488), Expect = 5.420e-52
Identity = 104/259 (40.15%), Postives = 157/259 (60.62%), Query Frame = 0
Query:    4 LMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAV---VRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDF--------NKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251
            LM+LG YT +FE+PL  FST+ PL +VL ++M ++   D+KRHRSD+  NN  T+ T+ +         V W+DV VG ++ +++K+ +PAD+V+L++SE   + YIET++IDGETNLK+R +    PT   P   P  + +  EE   V   +  E PN +I  FTGT  +          G PQ            ++ +P+D  N+LLRGA LRNT+WA+GVV YTG+++K+ +N+R  PSK S +D   NK +++
Sbjct:   70 LMMLGWYTDLFESPLAPFSTIIPLILVLSVTMVKDGAEDLKRHRSDNRVNN--TEATAMDIHTRGGFVPVAWKDVKVGMIVKIADKEEIPADVVLLSSSEPGGVAYIETANIDGETNLKIRTSA---PTR--PGQPPGPLWSSAEELHGVRMELEYEAPNARIHFFTGTLTLH------GGAGGPQDDSGEGGGGGTGSRDVPVDQSNLLLRGARLRNTKWAIGVVAYTGRESKIAQNARSVPSKQSNLDKVTNKIMFV 315          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|923120266|ref|XP_013753605.1| (hypothetical protein AMSG_10444 [Thecamonas trahens ATCC 50062] >gi|906561206|gb|KNC54449.1| hypothetical protein AMSG_10444 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 179.874 bits (455), Expect = 1.128e-50
Identity = 95/236 (40.25%), Postives = 137/236 (58.05%), Query Frame = 0
Query:   16 TPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251
            +PL  F+++FPL +VL I+ A+E   D +R + D ETN+R T+V         T E V W  V VGD++YV++ +  P D+++L+TS     CYIET+++DGETNLK+R+A +     DTP     + + + E     + CE PN ++ +FTGT  +    E   + G          + +DN  V LRG  LRNT W  GV VYTG DTKL RNS   PSK S+ID  +NK +++
Sbjct:  120 SPLNPFASIFPLALVLVITGAKELVEDRRRAKQDKETNSRTTRVLR---PGCTTVEEVSWESVRVGDIVYVTSGEAFPCDVILLSTSGEQGTCYIETANLDGETNLKIRQAPSQTLDFDTP-----EALTKFE---GTIECEGPNNRLYTFTGTLYLCKPSEREGTTG----------VALDNRKVCLRGCNLRNTEWVYGVAVYTGHDTKLMRNSMDPPSKRSQIDRIMNKDVFI 334          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|1183411886|gb|ORY36357.1| (phospholipid-translocating P-type ATPase [Rhizoclosmatium globosum])

HSP 1 Score: 181.03 bits (458), Expect = 4.268e-48
Identity = 107/250 (42.80%), Postives = 146/250 (58.40%), Query Frame = 0
Query:    3 FLMLLGTYTTIFE-TPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESV--RWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAI 249
            F + +G    I + +P     TL PL IVL  S  +E   D+KR + D E NNR  KV        V SE +  +W+DV VGD++ V N Q  PAD+V+L++SE D +CYIETS++DGETNLK+R+ +       T LL P + +A +E    V++ ELPN  + +F GT  +SHKE                 +P+D   +LLRGAMLRNTRW  GVVV+TG +TKL +NS   PSK +K++  VN  I
Sbjct:   59 FFLFIGCIQQIGDLSPTNKAGTLLPLGIVLFASGVKETLEDLKRTKQDTEVNNRDIKVL-------VGSEFIVKKWKDVVVGDIVRVENGQFFPADLVLLSSSEPDALCYIETSNLDGETNLKIRQGLQ----ETTDLLSP-EAVAGLE---GVIKSELPNNSLYTFEGTLRLSHKE-----------------VPLDPAQLLLRGAMLRNTRWIYGVVVFTGHETKLMKNSTATPSKSTKVERMVNTQI 276          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|223993145|ref|XP_002286256.1| (hypothetical protein THAPSDRAFT_26702 [Thalassiosira pseudonana CCMP1335] >gi|220977571|gb|EED95897.1| hypothetical protein THAPSDRAFT_26702 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 179.874 bits (455), Expect = 1.021e-47
Identity = 101/251 (40.24%), Postives = 146/251 (58.17%), Query Frame = 0
Query:    1 MGFLMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAIYM 251
            +G LM +G YT +FE+ ++ ++TL PL IV+ +S+AQEA+TD +RHRSD  TN     V        +  ESV   ++H GDL+ V N++ +P D+++LA+S      YIETSSIDGETNLKLR +  +LP+     + P           A +  E PN  + +++G   +        SE AP          ++ EN+LLRGAMLRNT W VGV  +TG DTKL  NS   PSK S++D+ +N+ + +
Sbjct:   18 IGILMFIGYYTPLFESAISPWTTLGPLAIVISVSLAQEAYTDAQRHRSDKATNYHPCVVLK----LPIAFESVFRMNIHAGDLVVVRNREMIPVDLILLASSNEGGSAYIETSSIDGETNLKLRNS-PHLPS-----VRPGVTGGDNSPFIATLTSEPPNTHVNNYSGKLTLPPMTPGEPSENAP----------LNAENILLRGAMLRNTEWVVGVACFTGADTKLVMNSVATPSKFSQLDMLINRTVVL 248          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|676394453|ref|XP_009040504.1| (hypothetical protein AURANDRAFT_55026 [Aureococcus anophagefferens] >gi|323448874|gb|EGB04767.1| hypothetical protein AURANDRAFT_55026 [Aureococcus anophagefferens])

HSP 1 Score: 176.022 bits (445), Expect = 2.742e-46
Identity = 103/260 (39.62%), Postives = 154/260 (59.23%), Query Frame = 0
Query:    1 MGFLMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWN-TGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDT---PLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAI-YMSGPM 255
            +  LM++GTYT +F +PLTA+ST+ PL+++L I+M +E   D+KRH+SD+  NN   ++ S +      T E+V W+ +  G ++ V +++ +PAD+V+L +SE    CY+ETS+IDGETNLK++R     P  D+   PL    D   + +     +  E P  K+ SF GT       +H   E           I +D    LLRG+ LRNT+ A+GVV YTGKDT+L RNSR  PSKLS+++  VN  + ++ G M
Sbjct:   78 ISLLMIIGTYTDLFYSPLTAWSTIGPLSLILAITMTKEGIEDLKRHKSDEHVNNSEARILSNSPETPPGTVETVAWKAIAPGQIVLVKDREEIPADLVLLWSSEGAQ-CYVETSNIDGETNLKIKR-----PATDSANAPLFPHPD---KSKGVGMTLEFEAPCGKVHSFEGTL------KHAGGE-----------IALDASQFLLRGSTLRNTKLAIGVVAYTGKDTRLVRNSRDVPSKLSELERVVNNMVLFILGAM 311          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|676385069|ref|XP_009035813.1| (hypothetical protein AURANDRAFT_53224 [Aureococcus anophagefferens] >gi|323453906|gb|EGB09777.1| hypothetical protein AURANDRAFT_53224 [Aureococcus anophagefferens])

HSP 1 Score: 175.252 bits (443), Expect = 5.288e-46
Identity = 102/260 (39.23%), Postives = 154/260 (59.23%), Query Frame = 0
Query:    1 MGFLMLLGTYTTIFETPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAV-TSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAV---VRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAI-YMSGPM 255
            +G LM++GTYT +F +PL  +ST+ PL+++L I+M +E   D+KRH+SD+  NN   ++ S +      T E+V W+ +  G ++ V +++ +PAD+V+L +SE    CY+ETS+IDGETNLK++R     P  D+     A +    +E + V   +  E P  K+ SF GT       +H   E           I +D    LLRG+ LRNT+ AVGVV YTGKDT+L RNSR  PSKL++++  VN  + ++ G M
Sbjct:   78 IGLLMIIGTYTDLFYSPLLPWSTITPLSLILAITMTKEGIEDLKRHKSDEHVNNSEARILSNSPETPPGTVETVAWKAIAPGQIVLVKDREEIPADLVLLWSSEGAQ-CYVETSNIDGETNLKIKR-----PATDSA---NAPLFPHPDESKGVGMTLEFEAPCAKVHSFEGTL------KHAGGE-----------IALDASQFLLRGSTLRNTKLAVGVVAYTGKDTRLVRNSRDVPSKLAELERVVNNMVLFLLGAM 311          
BLAST of EWM28798.1 vs. NCBI_GenBank
Match: gi|1183358695|gb|ORX86159.1| (phospholipid-translocating P-type ATPase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 174.481 bits (441), Expect = 9.955e-46
Identity = 98/234 (41.88%), Postives = 141/234 (60.26%), Query Frame = 0
Query:   16 TPLTAFSTLFPLTIVLGISMAQEAFTDVKRHRSDDETNNRMTKVTSWNTGAAVTSESVRWRDVHVGDLLYVSNKQPLPADMVILATSESDNICYIETSSIDGETNLKLRRAINYLPTHDTPLLDPADVIARVEEDQAVVRCELPNMKIESFTGTFCISHKEEHVSSEGAPQSGDFNKVIPIDNENVLLRGAMLRNTRWAVGVVVYTGKDTKLQRNSRHAPSKLSKIDVAVNKAI 249
            +P + FSTL PL +VL  +  +E F D KRH+SD E NNR  KV     G+A   E   WRDV VGD++ VS+K+  PAD+++L++SE + +CYIETS++DGETNLK+++ +  + +H   L  P D    V E Q  ++ ELPN  + ++ GT  I++             G   K+IP+D   +LLRGA LRNT W  GVVV+TG ++KL RN+   P K + ++   N  I
Sbjct:   73 SPTSRFSTLVPLIVVLIATSFKEIFEDYKRHQSDAEANNRPCKVL---VGSAF--EEKPWRDVVVGDIVRVSDKEFFPADLILLSSSEPEALCYIETSNLDGETNLKIKQGLQ-VTSH---LTTPND----VSELQGYIKSELPNNSLYTYDGTLVITN-------------GMAEKIIPVDPNQILLRGAQLRNTNWVYGVVVFTGHESKLMRNASATPIKRTNVEKMTNHQI 280          
The following BLAST results are available for this feature:
BLAST of EWM28798.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111221|gb|EWM28798.1|0.000e+0100.00phospholipid-transporting atpase id [Nannochlorops... [more]
gi|585103188|gb|EWM22623.1|8.165e-5743.20phospholipid-transporting atpase [Nannochloropsis ... [more]
gi|585112151|gb|EWM29580.1|1.974e-5541.80putative phospholipid-transporting atpase ia isofo... [more]
gi|299471195|emb|CBN79051.1|5.420e-5240.15conserved unknown protein [Ectocarpus siliculosus][more]
gi|923120266|ref|XP_013753605.1|1.128e-5040.25hypothetical protein AMSG_10444 [Thecamonas trahen... [more]
gi|1183411886|gb|ORY36357.1|4.268e-4842.80phospholipid-translocating P-type ATPase [Rhizoclo... [more]
gi|223993145|ref|XP_002286256.1|1.021e-4740.24hypothetical protein THAPSDRAFT_26702 [Thalassiosi... [more]
gi|676394453|ref|XP_009040504.1|2.742e-4639.62hypothetical protein AURANDRAFT_55026 [Aureococcus... [more]
gi|676385069|ref|XP_009035813.1|5.288e-4639.23hypothetical protein AURANDRAFT_53224 [Aureococcus... [more]
gi|1183358695|gb|ORX86159.1|9.955e-4641.88phospholipid-translocating P-type ATPase [Basidiob... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1935rna1935Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications