EWM28818.1, cds1928 (CDS) Nannochloropsis gaditana

Overview
NameEWM28818.1
Unique Namecds1928
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:507001..507855 +

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Properties
Property NameValue
Protein idEWM28818.1
ProductBromodomain transcription factor
Orig transcript idgnl|cribi|Naga_100002g86.4937.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:507001..507855 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019473TFIID_su8_C
IPR006565BTP
Homology
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BLAST of EWM28818.1 vs. NCBI_GenBank
Match: gi|585111241|gb|EWM28818.1| (Bromodomain transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0 
Query:    1 MCATPGTSAPSRFHPCQATVMAPKALSHSRPHAPAQPLTRYHHCGEADTFALAVTRQAVAQAALAVGCKETYPSVLDALTDLVRDYIVAVGVEAQSKAEAGGRTRATLLDVLAALEVPQQENARDRYEMDWRALRGFAFQGDESQLDRPEAFQWYQPFHTHIPPFPVHSRIYVENCRRSRKRALPLDRSSDVDSPGRETDEREEVSGGRSAYPRPAFVPSFLPPFPPEHTFRKTAVKASTKLDDPVAIQRHRIATKQLVLKTIARQNIASVNPKGEKEGNCAKA 284
            MCATPGTSAPSRFHPCQATVMAPKALSHSRPHAPAQPLTRYHHCGEADTFALAVTRQAVAQAALAVGCKETYPSVLDALTDLVRDYIVAVGVEAQSKAEAGGRTRATLLDVLAALEVPQQENARDRYEMDWRALRGFAFQGDESQLDRPEAFQWYQPFHTHIPPFPVHSRIYVENCRRSRKRALPLDRSSDVDSPGRETDEREEVSGGRSAYPRPAFVPSFLPPFPPEHTFRKTAVKASTKLDDPVAIQRHRIATKQLVLKTIARQNIASVNPKGEKEGNCAKA
Sbjct:    1 MCATPGTSAPSRFHPCQATVMAPKALSHSRPHAPAQPLTRYHHCGEADTFALAVTRQAVAQAALAVGCKETYPSVLDALTDLVRDYIVAVGVEAQSKAEAGGRTRATLLDVLAALEVPQQENARDRYEMDWRALRGFAFQGDESQLDRPEAFQWYQPFHTHIPPFPVHSRIYVENCRRSRKRALPLDRSSDVDSPGRETDEREEVSGGRSAYPRPAFVPSFLPPFPPEHTFRKTAVKASTKLDDPVAIQRHRIATKQLVLKTIARQNIASVNPKGEKEGNCAKA 284
The following BLAST results are available for this feature:
BLAST of EWM28818.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111241|gb|EWM28818.1|0.000e+0100.00Bromodomain transcription factor [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1933rna1933Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications