EWM28767.1, cds1918 (CDS) Nannochloropsis gaditana

Overview
NameEWM28767.1
Unique Namecds1918
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:476606..477955 +
Alignment locationCM002458.1:478000..478131 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28767.1
ProductApaG domain protein
Orig transcript idgnl|cribi|Naga_100002g97.4886.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:476606..477955 +
CM002458.1supercontigCM002458.1:478000..478131 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007474ApaG_domain
Homology
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|585111190|gb|EWM28767.1| (ApaG domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1013.06 bits (2618), Expect = 0.000e+0
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0
Query:    1 MFDVVFLYFTYQANLNLHEQLTQIVLFGLLACAASCTRSQIPACFPTRHNYKLPRCTGLAGGFIMFCSTSVSQLVVVSVTLLFGSTNAFVSPAIWSRIQSSLRLHGQRVEAEQPPVLGSVASTSPFRRALTFGERMTALRATAPMSFGDFGGQQNGDELSFAEVREQLGALESRLAGAMEFGRYDEAKQLVNEITTMKDFLEKQLNGRQVGSDGVPNGKGSSRASRNPFFDAFGLGGASPMAATMMAPVQPSSSAPQPRRSSRPGLGAFGSVVGSRRRPSGSASKSSGGLVNGPREGWVGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELPGDTLAGELEKRGFRIWYTHLELGSSAHAGIKKGIRALEKGIMKGSTT 493
            MFDVVFLYFTYQANLNLHEQLTQIVLFGLLACAASCTRSQIPACFPTRHNYKLPRCTGLAGGFIMFCSTSVSQLVVVSVTLLFGSTNAFVSPAIWSRIQSSLRLHGQRVEAEQPPVLGSVASTSPFRRALTFGERMTALRATAPMSFGDFGGQQNGDELSFAEVREQLGALESRLAGAMEFGRYDEAKQLVNEITTMKDFLEKQLNGRQVGSDGVPNGKGSSRASRNPFFDAFGLGGASPMAATMMAPVQPSSSAPQPRRSSRPGLGAFGSVVGSRRRPSGSASKSSGGLVNGPREGWVGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELPGDTLAGELEKRGFRIWYTHLELGSSAHAGIKKGIRALEKGIMKGSTT
Sbjct:    1 MFDVVFLYFTYQANLNLHEQLTQIVLFGLLACAASCTRSQIPACFPTRHNYKLPRCTGLAGGFIMFCSTSVSQLVVVSVTLLFGSTNAFVSPAIWSRIQSSLRLHGQRVEAEQPPVLGSVASTSPFRRALTFGERMTALRATAPMSFGDFGGQQNGDELSFAEVREQLGALESRLAGAMEFGRYDEAKQLVNEITTMKDFLEKQLNGRQVGSDGVPNGKGSSRASRNPFFDAFGLGGASPMAATMMAPVQPSSSAPQPRRSSRPGLGAFGSVVGSRRRPSGSASKSSGGLVNGPREGWVGKGKSGDLPMEAVRKRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELPGDTLAGELEKRGFRIWYTHLELGSSAHAGIKKGIRALEKGIMKGSTT 493          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|1089087929|emb|SEA19975.1| (ApaG protein [Arachidicoccus rhizosphaerae])

HSP 1 Score: 62.7734 bits (151), Expect = 2.370e-8
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = 0
Query:  323 GIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELP 446
            GI++ V  FFQP  S P  N Y F   + + N N   V+LLSR   IF ++G+  E       + +QP + PG+ Y Y+S   +         +GR+ G + +  +D      VPI  F L  P
Sbjct:    8 GIKINVETFFQPDQSSPMVNEYLFAYRITIENHNHFVVRLLSRHWHIFDSNGTTQEV-KGDGVVGAQPYIEPGAAYQYISGCNLN------SEMGRMHGDYLMENQDTKMQFTVPIPAFDLITP 124          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|298710874|emb|CBJ26383.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.855 bits (159), Expect = 7.479e-8
Identity = 51/140 (36.43%), Postives = 71/140 (50.71%), Query Frame = 0
Query:  316 HSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSR--ELKIFKADGSPP-EYGPASQQLESQPVVGPGSVYMYMSEFGITCVP-EDRKYLGRIEGHFNVAVKDE-NAVVKVPIAPFWLELPGDTL 450
             S  T  GIRVEV   + P  S P  + Y F   V++TN +   VQL+SR  E+K  +A  +P    GP    +  QPV+ PG  + Y S   ITC P E  + LGR++G + + +     A  +  I PF+L LP   L
Sbjct:  290 KSVTTTNGIRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSSQTVQLVSRTWEIKAIEATEAPQLVKGPGV--VGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQAVL 427          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|786223130|ref|WP_045754833.1| (Co2+/Mg2+ efflux protein ApaG [Sphingobacterium sp. PM2-P1-29] >gi|672716246|emb|CDT05420.1| Protein ApaG [Sphingobacterium sp. PM2-P1-29] >gi|1145448668|emb|SJN32240.1| ApaG protein [Sphingobacterium faecium PCAi_F2.5])

HSP 1 Score: 60.8474 bits (146), Expect = 1.172e-7
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 0
Query:  323 GIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPE-YGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWL 443
            GI++ V C FQP  S P+ + + F   + + N +   +QL+SR   IF + G   E YG     +  QP++ PG ++ Y S   +      +  +G +EGH+N+    +    KV I  F L
Sbjct:    8 GIKISVECIFQPEYSNPERDHFMFAYQISIENLSDYSIQLISRYWNIFDSIGDHNEVYGDGI--VGEQPIIEPGQMHQYTSGCNL------KSEMGYMEGHYNMVKLIDETTFKVDIPRFNL 121          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|740909744|ref|WP_038694991.1| (Co2+/Mg2+ efflux protein ApaG [Sphingobacterium sp. ML3W] >gi|676326865|gb|AIM35366.1| cobalt transporter [Sphingobacterium sp. ML3W])

HSP 1 Score: 59.6918 bits (143), Expect = 2.721e-7
Identity = 35/122 (28.69%), Postives = 59/122 (48.36%), Query Frame = 0
Query:  323 GIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPE-YGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWL 443
            GI++ V C FQP  S P+   + F   + + N +   +QL+SR   IF + G   E YG     +  QP++ PG ++ Y S   +      +  +G +EG++N+    +    +V I  F L
Sbjct:    8 GIKISVACIFQPEYSNPEREHFMFAYQISIENLSDSSIQLISRYWNIFDSVGDHNEIYGDGV--VGEQPIIAPGQIHQYTSGCNL------KSEIGYMEGYYNMVKLIDETTFQVDIPRFNL 121          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|1150102897|ref|XP_020237527.1| (uncharacterized protein LOC109816810 isoform X1 [Cajanus cajan] >gi|1012333189|gb|KYP44591.1| Protein apaG [Cajanus cajan])

HSP 1 Score: 62.3882 bits (150), Expect = 3.231e-7
Identity = 49/138 (35.51%), Postives = 67/138 (48.55%), Query Frame = 0
Query:  314 KRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPE-YGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDE--NAVVKVPIAPFWLELPGD 448
            K  SD T  GIRV+V   +  G S+P   LY F   +R+TN +   VQLL R   I  A+G     +G     +  QP++ PG+ + Y S   ++  P      GR+EG F +   D   +    V IAPF L L GD
Sbjct:  125 KCSSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGRTENVWGIGV--VGEQPLILPGNSFEYSSACPLS-TPN-----GRMEGDFEMIHVDRVGSRSFNVAIAPFSLSLLGD 254          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|778657818|ref|XP_004152556.2| (PREDICTED: uncharacterized protein LOC101202808 [Cucumis sativus] >gi|700209220|gb|KGN64316.1| hypothetical protein Csa_1G046130 [Cucumis sativus])

HSP 1 Score: 62.3882 bits (150), Expect = 3.399e-7
Identity = 47/136 (34.56%), Postives = 64/136 (47.06%), Query Frame = 0
Query:  317 SDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPE-YGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDE--NAVVKVPIAPFWLELPGDT 449
            SD T  GIRV+V   +  G S+P  N Y F   +R+TN +   VQLL R   I  A+G     +G     +  QPV+ P + + Y S   +T         GR+EG F +   D        V IAPF L + GD+
Sbjct:  156 SDATTLGIRVQVRSVYIEGRSQPSKNQYFFAYRIRITNNSNRPVQLLRRHWIITDANGKTENVWGVGV--IGEQPVILPKTGFEYSSACPLTTAN------GRMEGDFEMKYIDRVGEQSFNVAIAPFSLSIIGDS 283          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|659067260|ref|XP_008438502.1| (PREDICTED: uncharacterized protein LOC103483578 [Cucumis melo])

HSP 1 Score: 62.3882 bits (150), Expect = 3.691e-7
Identity = 47/136 (34.56%), Postives = 64/136 (47.06%), Query Frame = 0
Query:  317 SDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPE-YGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDE--NAVVKVPIAPFWLELPGDT 449
            SD T  GIRV+V   +  G S+P  N Y F   +R+TN +   VQLL R   I  A+G     +G     +  QPV+ P + + Y S   +T         GR+EG F +   D        V IAPF L + GD+
Sbjct:  156 SDATTLGIRVQVRSVYIEGRSQPSKNQYFFAYRIRITNNSNRPVQLLRRHWIITDANGKTENVWGVGV--IGEQPVILPKTGFEYSSACPLTTAN------GRMEGDFEMKYIDRVGEQSFNVAIAPFSLSILGDS 283          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|224133570|ref|XP_002321607.1| (hypothetical protein POPTR_0015s08920g [Populus trichocarpa] >gi|222868603|gb|EEF05734.1| hypothetical protein POPTR_0015s08920g [Populus trichocarpa])

HSP 1 Score: 62.3882 bits (150), Expect = 4.046e-7
Identity = 47/137 (34.31%), Postives = 65/137 (47.45%), Query Frame = 0
Query:  314 KRHSDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLESQPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDE--NAVVKVPIAPFWLELPGD 448
            K  SD T  GIRV+V   +  G S+P    Y F   +R+TN +   VQLL R   I  A+G    +      +  QPV+ P + + Y S   + C P      GR+EG F +   D+  +    V IAPF L + GD
Sbjct:  151 KCSSDATTLGIRVQVRSVYIEGRSQPSKGQYFFAYRIRITNNSDRPVQLLRRHWIITDANGKTENFWGVG-VIGEQPVILPRTGFEYSSACPL-CTPN-----GRMEGDFEMKHIDKAGSPTFNVAIAPFSLSILGD 280          
BLAST of EWM28767.1 vs. NCBI_GenBank
Match: gi|517455700|ref|WP_018626477.1| (Co2+/Mg2+ efflux protein ApaG [Niabella aurantiaca])

HSP 1 Score: 58.9214 bits (141), Expect = 4.679e-7
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 0
Query:  317 SDITAYGIRVEVFCFFQPGASRPQDNLYQFQCNVRLTNTNPGDVQLLSRELKIFKADGSPPEYGPASQQLES------QPVVGPGSVYMYMSEFGITCVPEDRKYLGRIEGHFNVAVKDENAVVKVPIAPFWLELP 446
            S + + GI V V  FFQP  S    + + F   + L N NP  V+LL R   IF ++GS        +Q+E       QPV+ PG  Y YMS   +      R  +G+++G + +  ++ + +  V I  F +  P
Sbjct:    2 SSLISAGIHVNVEVFFQPEYSNALQSEFMFAYRITLENYNPFSVKLLRRSWYIFDSNGS-------YRQVEGEGVVGVQPVLAPGESYQYMSGCNL------RSEMGKMKGSYEMENQNSHQLFSVEIPEFEMVAP 124          
The following BLAST results are available for this feature:
BLAST of EWM28767.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111190|gb|EWM28767.1|0.000e+0100.00ApaG domain protein [Nannochloropsis gaditana][more]
gi|1089087929|emb|SEA19975.1|2.370e-832.26ApaG protein [Arachidicoccus rhizosphaerae][more]
gi|298710874|emb|CBJ26383.1|7.479e-836.43conserved unknown protein [Ectocarpus siliculosus][more]
gi|786223130|ref|WP_045754833.1|1.172e-730.33Co2+/Mg2+ efflux protein ApaG [Sphingobacterium sp... [more]
gi|740909744|ref|WP_038694991.1|2.721e-728.69Co2+/Mg2+ efflux protein ApaG [Sphingobacterium sp... [more]
gi|1150102897|ref|XP_020237527.1|3.231e-735.51uncharacterized protein LOC109816810 isoform X1 [C... [more]
gi|778657818|ref|XP_004152556.2|3.399e-734.56PREDICTED: uncharacterized protein LOC101202808 [C... [more]
gi|659067260|ref|XP_008438502.1|3.691e-734.56PREDICTED: uncharacterized protein LOC103483578 [C... [more]
gi|224133570|ref|XP_002321607.1|4.046e-734.31hypothetical protein POPTR_0015s08920g [Populus tr... [more]
gi|517455700|ref|WP_018626477.1|4.679e-730.15Co2+/Mg2+ efflux protein ApaG [Niabella aurantiaca... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1923rna1923Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications