EWM28671.1, cds1878 (CDS) Nannochloropsis gaditana

Overview
NameEWM28671.1
Unique Namecds1878
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:370111..370330 +
Alignment locationCM002458.1:370528..370693 +
Alignment locationCM002458.1:370828..371746 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28671.1
Productzinc ion binding protein
Orig transcript idgnl|cribi|Naga_100002g140.4790.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:370111..370330 +
CM002458.1supercontigCM002458.1:370528..370693 +
CM002458.1supercontigCM002458.1:370828..371746 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012935Znf_C3HC-like
Homology
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|585111094|gb|EWM28671.1| (zinc ion binding protein [Nannochloropsis gaditana])

HSP 1 Score: 887.486 bits (2292), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0
Query:    1 MLSSTPLSENRRSDTAETTVFRRRDPSQEDIDHAASTLRACVDRDLLSEICHGDDVKPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEGKEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434
            MLSSTPLSENRRSDTAETTVFRRRDPSQEDIDHAASTLRACVDRDLLSEICHGDDVKPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEGKEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM
Sbjct:    1 MLSSTPLSENRRSDTAETTVFRRRDPSQEDIDHAASTLRACVDRDLLSEICHGDDVKPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEGKEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1191655433|gb|OTG07404.1| (putative zinc finger, C3HC-like protein [Helianthus annuus])

HSP 1 Score: 103.219 bits (256), Expect = 6.446e-20
Identity = 58/176 (32.95%), Postives = 83/176 (47.16%), Query Frame = 0
Query:   74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTH--------TDGH--EPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGAS-----SQSARLTLDILAD 234
            G +   CRPW   D   RL TF+P  WFGK  A +   CA +GWVNVD+DT+ CE C   LT+        T+G   E   +LL   H  TCPWR  +C   +  FP     +L+    DR +G  +            +P    + +D +K+ +G       +QS+    DI++D
Sbjct:   79 GSSKPSCRPWERGDLLRRLSTFSPANWFGKPKAASSLSCARRGWVNVDVDTIQCEACGENLTYDAQDSWARTEGENGEEFANLLDEGHNATCPWRGNSCAASLVQFPPTPPSALIGGYKDRCDGLIQFPY---------LPVVANSALDQMKLSRGLEIDRFLAQSSGYPADIMSD 245          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|527203575|gb|EPS69993.1| (hypothetical protein M569_04773, partial [Genlisea aurea])

HSP 1 Score: 94.3597 bits (233), Expect = 1.275e-18
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 0
Query:   65 LSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARL--------THTDGHEPAPDL---LSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLL 192
            L+  P   K      C+PW   DFF RL TF    WF K   L+P  CA +GW+N D+DT+VC  C ARL        T     + A      L A H + CPW   AC  +++HFP V+++ L      R+    +++
Sbjct:   63 LTGLPGSSKLSQAPTCKPWDRDDFFSRLSTFKSISWFAKPQVLSPVECARRGWINSDIDTVVCSYCGARLLFATPLSWTQQQVEKAAVVFSLKLEAGHKMLCPWINNACAEDIAHFPDVSSRVLAEDYKRRITSLSQII 201          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|976926737|gb|KVI10589.1| (Zinc finger, C3HC-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 96.2857 bits (238), Expect = 1.405e-17
Identity = 59/192 (30.73%), Postives = 80/192 (41.67%), Query Frame = 0
Query:   74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT-----------DGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRL-------------LRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDI-LADRVQDWL 240
            G +   CRPW   D   RL TF P  WFGK  A +   CA +GWVNVD+D + CE C A L +            +G E   + L   H +TCPWR  +C   +  FP     +L+    DR +G  +              +R   G      PE  + L+       G S   A +T DI +  R Q  +
Sbjct:   82 GSSQPSCRPWERGDLLRRLSTFRPANWFGKPKAASSLACARRGWVNVDVDKIQCESCGANLKYNAPDSWTPTEGDNGGEEFGNQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLVQFPCLPVVVASALEQMRVSRG------PEIDRFLVQSCAFSVGESGFKAEITSDICIYSRAQKLI 267          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1150168866|ref|XP_020226540.1| (uncharacterized protein LOC109808107 [Cajanus cajan] >gi|1012344446|gb|KYP55638.1| NIPA-like protein [Cajanus cajan])

HSP 1 Score: 95.5153 bits (236), Expect = 2.308e-17
Identity = 67/211 (31.75%), Postives = 98/211 (46.45%), Query Frame = 0
Query:   80 CRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGH-------EPAPDL----LSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKR----GALTLALLGWEAFPL 275
            CRPW  ADF  RL TF    WF K   ++   CA +GW+NVD+DT+ CE C ARL  +          E A  +    L+  H + CPW   AC   ++HFP  T   L+ +  +R   C  LL+        +IP    + ID +K      SQS+ L  D L    Q  + +  + +  +G V  ++E +        ++L GW+  PL
Sbjct:   67 CRPWDRADFMRRLATFKSISWFAKPKMVSAVNCARRGWINVDIDTIACEACGARLLFSTPASWNQQQVEKAALVFSLKLNNGHKVHCPWIDNACNETLAHFPPTTPSILVDNFRER---CFALLQLS------AIPRISSSTIDYMK------SQSSLLE-DFLG---QSLMLEYGNGSAEIGNVSSQEELKLYFQAQKLVSLCGWKLRPL 258          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|299470804|emb|CBN79850.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.9745 bits (232), Expect = 4.422e-17
Identity = 98/392 (25.00%), Postives = 142/392 (36.22%), Query Frame = 0
Query:   80 CRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARL------THTDGH------------------EPAPDL-----LSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAA----PGVGEVGGEDEKR-----------GALTLALLGWEAFPLS-------KGSPTQS------------GGNIGRPRGDWVLKCGLCGRSIQASRIADRRG--SFGRGRGSEGEGKEEQIPRVKARSVE----------------SPLGPLTFDAVSQHRWWCPWVS-------RGMDEKGMLGWRQALKAVVG 383
            CRPW    F  RL TFTP  WF K    +P  CA  GW+N   DTL C+ C A+L        +DG+                  EP P       L + H   CPW   AC  E    P +  +  L+    RL+    ++RA   +  +S+P   +    G     G S+ +A+    ++  R +      A A      G G+  G  + R            A  +A+ GW++ P +         SPT+             GG     +    L C LC R +            S G G  + G G EE    + +                    +PL P+  D   +HR +CPW +           E  + GWR  L+AV+G
Sbjct:   60 CRPWDYESFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQCCSAQLRFADQAAGSDGNAANDDVCGGGGGDIVAVVEPTPSSSFSSRLQSQHHDLCPWNGNACPREFLQLPPMAVEDQLADFLARLDSLLPVMRAA-ALPEVSLPSTFEQHCPG-----GLSALAAKAMPSVVETREETSENRTAGAHKRQRSGSGKAAGSADNREMLRFGDEMLGTAAAIAMFGWQSAPATVPVSACAAVSPTEGSSSNGSTVAVADGGARATAKSPARLSCALCKRRLVTDNFLTLEAGPSSGVGCTAAGTGAEESPGVLSSPEGRGGSGRSGKRRRLSGGGTPLKPM--DLAVEHRSFCPWAAVHPPVAGEEAIEGAVPGWRLPLEAVLG 443          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1028964777|ref|XP_016725888.1| (PREDICTED: uncharacterized protein LOC107937510 [Gossypium hirsutum] >gi|1028964779|ref|XP_016725889.1| PREDICTED: uncharacterized protein LOC107937510 [Gossypium hirsutum])

HSP 1 Score: 94.7449 bits (234), Expect = 5.071e-17
Identity = 61/217 (28.11%), Postives = 94/217 (43.32%), Query Frame = 0
Query:   74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT-----------DGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTL--------ALLGWE 271
            G +   CRPW   D   RL TF P  WFGK    +   CA +GWVN+D+D +VCE C A L              D  E     L   H ++CPWR  +C   +  FP     +L++   DR +G  +           S+P    + +D +++ +G         +D L   +Q+++ +  S +  V E+  +  + GA  L        +L GWE
Sbjct:   71 GSSRTSCRPWERGDLLRRLATFKPMNWFGKPKVASSLACAQRGWVNIDVDKIVCETCGACLHFASSPSWPTSEVEDAGEAFSKQLDIGHKVSCPWRGNSCPESLVQFPPTPQSALIAGYKDRCDGLVQFQ---------SLPIIATSAMDHMRVSRGPQ-------VDRLLSLLQNYVSEFESRSENVPEL--DVTRDGAFCLYSRSQKLISLCGWE 269          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1050651400|ref|XP_017649091.1| (PREDICTED: uncharacterized protein LOC108489227 [Gossypium arboreum] >gi|1050651402|ref|XP_017649092.1| PREDICTED: uncharacterized protein LOC108489227 [Gossypium arboreum] >gi|728818215|gb|KHG02722.1| NIPA-like protein [Gossypium arboreum])

HSP 1 Score: 94.3597 bits (233), Expect = 5.966e-17
Identity = 61/217 (28.11%), Postives = 94/217 (43.32%), Query Frame = 0
Query:   74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT-----------DGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTL--------ALLGWE 271
            G +   CRPW   D   RL TF P  WFGK    +   CA +GWVN+D+D +VCE C A L              D  E     L   H ++CPWR  +C   +  FP     +L++   DR +G  +           S+P    + +D +++ +G         +D L   +Q+++ +  S +  V E+  +  + GA  L        +L GWE
Sbjct:   71 GSSRTSCRPWERGDLLRRLATFKPMNWFGKPKVASSLACAQRGWVNIDVDKIVCETCGACLHFASSPSWPTSEVEDAGEAFSKQLDIGHKVSCPWRGNSCPESLVQFPPTPQSALIAGYKDRCDGLVQFQ---------SLPIIATSAMDHMRVSRGPQ-------VDRLLSLLQNYVSEFESRSESVPEL--DVTRDGAFCLYSRSQKLISLCGWE 269          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1109085552|ref|XP_019095057.1| (PREDICTED: uncharacterized protein LOC104756051 [Camelina sativa])

HSP 1 Score: 94.3597 bits (233), Expect = 6.307e-17
Identity = 65/206 (31.55%), Postives = 91/206 (44.17%), Query Frame = 0
Query:   80 CRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT----DGHEPAPD--------LLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTL--DILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWE 271
            CR W   D   RL TF P  W GK    +   CA +GWV+VD+D + CE C + L +T      + P  D         L A+H  +CPW  Q+C   +  FP     +L+    DR +G   LL+ Y      S+P   Q+ ID  +M+     Q  RL     + A+    +  D  SAA    EV   +  R    ++L GWE
Sbjct:   81 CRTWDRGDLLRRLATFKPSNWLGKPKTASSLACAQKGWVSVDLDKIQCEYCGSNLHYTPPQDSSNHPEADSIREEFSNQLDAAHESSCPWVGQSCAESLVQFPPTPPSALIGGYKDRCDG---LLQFY------SLPIVSQSAID--QMRASRRPQIDRLLAHPQVYANDDLSFRMDNISAAETSKEVALSNYYRAQKLISLCGWE 275          
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|720061100|ref|XP_010275066.1| (PREDICTED: uncharacterized protein LOC104610239 [Nelumbo nucifera])

HSP 1 Score: 93.9745 bits (232), Expect = 7.256e-17
Identity = 52/157 (33.12%), Postives = 71/157 (45.22%), Query Frame = 0
Query:   74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARL----------THTD-GHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKG 219
            G +   CRPW   D   RL TF P  WFGK    +   CA +GWVNVD+D +VCE C A L          T  D   E     L   H +TCPWR  +C   +  FP     +L+    DR +G  + L         S+P    + I+ +++ +G
Sbjct:   82 GSSQPSCRPWERGDLLRRLATFKPSNWFGKPKDASSLACARRGWVNVDVDKIVCESCGANLSFVLLASWTPTEVDTAGEAFAKQLDTGHKVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFL---------SLPVVAASAIEQMRISRG 229          
The following BLAST results are available for this feature:
BLAST of EWM28671.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111094|gb|EWM28671.1|0.000e+0100.00zinc ion binding protein [Nannochloropsis gaditana... [more]
gi|1191655433|gb|OTG07404.1|6.446e-2032.95putative zinc finger, C3HC-like protein [Helianthu... [more]
gi|527203575|gb|EPS69993.1|1.275e-1834.53hypothetical protein M569_04773, partial [Genlisea... [more]
gi|976926737|gb|KVI10589.1|1.405e-1730.73Zinc finger, C3HC-like protein [Cynara cardunculus... [more]
gi|1150168866|ref|XP_020226540.1|2.308e-1731.75uncharacterized protein LOC109808107 [Cajanus caja... [more]
gi|299470804|emb|CBN79850.1|4.422e-1725.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1028964777|ref|XP_016725888.1|5.071e-1728.11PREDICTED: uncharacterized protein LOC107937510 [G... [more]
gi|1050651400|ref|XP_017649091.1|5.966e-1728.11PREDICTED: uncharacterized protein LOC108489227 [G... [more]
gi|1109085552|ref|XP_019095057.1|6.307e-1731.55PREDICTED: uncharacterized protein LOC104756051 [C... [more]
gi|720061100|ref|XP_010275066.1|7.256e-1733.12PREDICTED: uncharacterized protein LOC104610239 [N... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1883rna1883Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications