EWM28671.1, cds1878 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|585111094|gb|EWM28671.1| (zinc ion binding protein [Nannochloropsis gaditana]) HSP 1 Score: 887.486 bits (2292), Expect = 0.000e+0 Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 0
Query: 1 MLSSTPLSENRRSDTAETTVFRRRDPSQEDIDHAASTLRACVDRDLLSEICHGDDVKPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEGKEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434
MLSSTPLSENRRSDTAETTVFRRRDPSQEDIDHAASTLRACVDRDLLSEICHGDDVKPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEGKEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM
Sbjct: 1 MLSSTPLSENRRSDTAETTVFRRRDPSQEDIDHAASTLRACVDRDLLSEICHGDDVKPSYVPHLLSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWEAFPLSKGSPTQSGGNIGRPRGDWVLKCGLCGRSIQASRIADRRGSFGRGRGSEGEGKEEQIPRVKARSVESPLGPLTFDAVSQHRWWCPWVSRGMDEKGMLGWRQALKAVVGRMRQVEDLGLLGLSEQEADMGKHNGLGLDDSLNSPSYSSMYSKVKCLMDSM 434
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1191655433|gb|OTG07404.1| (putative zinc finger, C3HC-like protein [Helianthus annuus]) HSP 1 Score: 103.219 bits (256), Expect = 6.446e-20 Identity = 58/176 (32.95%), Postives = 83/176 (47.16%), Query Frame = 0
Query: 74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTH--------TDGH--EPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGAS-----SQSARLTLDILAD 234
G + CRPW D RL TF+P WFGK A + CA +GWVNVD+DT+ CE C LT+ T+G E +LL H TCPWR +C + FP +L+ DR +G + +P + +D +K+ +G +QS+ DI++D
Sbjct: 79 GSSKPSCRPWERGDLLRRLSTFSPANWFGKPKAASSLSCARRGWVNVDVDTIQCEACGENLTYDAQDSWARTEGENGEEFANLLDEGHNATCPWRGNSCAASLVQFPPTPPSALIGGYKDRCDGLIQFPY---------LPVVANSALDQMKLSRGLEIDRFLAQSSGYPADIMSD 245
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|527203575|gb|EPS69993.1| (hypothetical protein M569_04773, partial [Genlisea aurea]) HSP 1 Score: 94.3597 bits (233), Expect = 1.275e-18 Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 0
Query: 65 LSTFPSPWKGENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARL--------THTDGHEPAPDL---LSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLL 192
L+ P K C+PW DFF RL TF WF K L+P CA +GW+N D+DT+VC C ARL T + A L A H + CPW AC +++HFP V+++ L R+ +++
Sbjct: 63 LTGLPGSSKLSQAPTCKPWDRDDFFSRLSTFKSISWFAKPQVLSPVECARRGWINSDIDTVVCSYCGARLLFATPLSWTQQQVEKAAVVFSLKLEAGHKMLCPWINNACAEDIAHFPDVSSRVLAEDYKRRITSLSQII 201
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|976926737|gb|KVI10589.1| (Zinc finger, C3HC-like protein [Cynara cardunculus var. scolymus]) HSP 1 Score: 96.2857 bits (238), Expect = 1.405e-17 Identity = 59/192 (30.73%), Postives = 80/192 (41.67%), Query Frame = 0
Query: 74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT-----------DGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRL-------------LRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDI-LADRVQDWL 240
G + CRPW D RL TF P WFGK A + CA +GWVNVD+D + CE C A L + +G E + L H +TCPWR +C + FP +L+ DR +G + +R G PE + L+ G S A +T DI + R Q +
Sbjct: 82 GSSQPSCRPWERGDLLRRLSTFRPANWFGKPKAASSLACARRGWVNVDVDKIQCESCGANLKYNAPDSWTPTEGDNGGEEFGNQLDEGHNVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLVQFPCLPVVVASALEQMRVSRG------PEIDRFLVQSCAFSVGESGFKAEITSDICIYSRAQKLI 267
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1150168866|ref|XP_020226540.1| (uncharacterized protein LOC109808107 [Cajanus cajan] >gi|1012344446|gb|KYP55638.1| NIPA-like protein [Cajanus cajan]) HSP 1 Score: 95.5153 bits (236), Expect = 2.308e-17 Identity = 67/211 (31.75%), Postives = 98/211 (46.45%), Query Frame = 0
Query: 80 CRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHTDGH-------EPAPDL----LSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKR----GALTLALLGWEAFPL 275
CRPW ADF RL TF WF K ++ CA +GW+NVD+DT+ CE C ARL + E A + L+ H + CPW AC ++HFP T L+ + +R C LL+ +IP + ID +K SQS+ L D L Q + + + + +G V ++E + ++L GW+ PL
Sbjct: 67 CRPWDRADFMRRLATFKSISWFAKPKMVSAVNCARRGWINVDIDTIACEACGARLLFSTPASWNQQQVEKAALVFSLKLNNGHKVHCPWIDNACNETLAHFPPTTPSILVDNFRER---CFALLQLS------AIPRISSSTIDYMK------SQSSLLE-DFLG---QSLMLEYGNGSAEIGNVSSQEELKLYFQAQKLVSLCGWKLRPL 258
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|299470804|emb|CBN79850.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 93.9745 bits (232), Expect = 4.422e-17 Identity = 98/392 (25.00%), Postives = 142/392 (36.22%), Query Frame = 0
Query: 80 CRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARL------THTDGH------------------EPAPDL-----LSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAA----PGVGEVGGEDEKR-----------GALTLALLGWEAFPLS-------KGSPTQS------------GGNIGRPRGDWVLKCGLCGRSIQASRIADRRG--SFGRGRGSEGEGKEEQIPRVKARSVE----------------SPLGPLTFDAVSQHRWWCPWVS-------RGMDEKGMLGWRQALKAVVG 383
CRPW F RL TFTP WF K +P CA GW+N DTL C+ C A+L +DG+ EP P L + H CPW AC E P + + L+ RL+ ++RA + +S+P + G G S+ +A+ ++ R + A A G G+ G + R A +A+ GW++ P + SPT+ GG + L C LC R + S G G + G G EE + + +PL P+ D +HR +CPW + E + GWR L+AV+G
Sbjct: 60 CRPWDYESFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQCCSAQLRFADQAAGSDGNAANDDVCGGGGGDIVAVVEPTPSSSFSSRLQSQHHDLCPWNGNACPREFLQLPPMAVEDQLADFLARLDSLLPVMRAA-ALPEVSLPSTFEQHCPG-----GLSALAAKAMPSVVETREETSENRTAGAHKRQRSGSGKAAGSADNREMLRFGDEMLGTAAAIAMFGWQSAPATVPVSACAAVSPTEGSSSNGSTVAVADGGARATAKSPARLSCALCKRRLVTDNFLTLEAGPSSGVGCTAAGTGAEESPGVLSSPEGRGGSGRSGKRRRLSGGGTPLKPM--DLAVEHRSFCPWAAVHPPVAGEEAIEGAVPGWRLPLEAVLG 443
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1028964777|ref|XP_016725888.1| (PREDICTED: uncharacterized protein LOC107937510 [Gossypium hirsutum] >gi|1028964779|ref|XP_016725889.1| PREDICTED: uncharacterized protein LOC107937510 [Gossypium hirsutum]) HSP 1 Score: 94.7449 bits (234), Expect = 5.071e-17 Identity = 61/217 (28.11%), Postives = 94/217 (43.32%), Query Frame = 0
Query: 74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT-----------DGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTL--------ALLGWE 271
G + CRPW D RL TF P WFGK + CA +GWVN+D+D +VCE C A L D E L H ++CPWR +C + FP +L++ DR +G + S+P + +D +++ +G +D L +Q+++ + S + V E+ + + GA L +L GWE
Sbjct: 71 GSSRTSCRPWERGDLLRRLATFKPMNWFGKPKVASSLACAQRGWVNIDVDKIVCETCGACLHFASSPSWPTSEVEDAGEAFSKQLDIGHKVSCPWRGNSCPESLVQFPPTPQSALIAGYKDRCDGLVQFQ---------SLPIIATSAMDHMRVSRGPQ-------VDRLLSLLQNYVSEFESRSENVPEL--DVTRDGAFCLYSRSQKLISLCGWE 269
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1050651400|ref|XP_017649091.1| (PREDICTED: uncharacterized protein LOC108489227 [Gossypium arboreum] >gi|1050651402|ref|XP_017649092.1| PREDICTED: uncharacterized protein LOC108489227 [Gossypium arboreum] >gi|728818215|gb|KHG02722.1| NIPA-like protein [Gossypium arboreum]) HSP 1 Score: 94.3597 bits (233), Expect = 5.966e-17 Identity = 61/217 (28.11%), Postives = 94/217 (43.32%), Query Frame = 0
Query: 74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT-----------DGHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTLDILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTL--------ALLGWE 271
G + CRPW D RL TF P WFGK + CA +GWVN+D+D +VCE C A L D E L H ++CPWR +C + FP +L++ DR +G + S+P + +D +++ +G +D L +Q+++ + S + V E+ + + GA L +L GWE
Sbjct: 71 GSSRTSCRPWERGDLLRRLATFKPMNWFGKPKVASSLACAQRGWVNIDVDKIVCETCGACLHFASSPSWPTSEVEDAGEAFSKQLDIGHKVSCPWRGNSCPESLVQFPPTPQSALIAGYKDRCDGLVQFQ---------SLPIIATSAMDHMRVSRGPQ-------VDRLLSLLQNYVSEFESRSESVPEL--DVTRDGAFCLYSRSQKLISLCGWE 269
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|1109085552|ref|XP_019095057.1| (PREDICTED: uncharacterized protein LOC104756051 [Camelina sativa]) HSP 1 Score: 94.3597 bits (233), Expect = 6.307e-17 Identity = 65/206 (31.55%), Postives = 91/206 (44.17%), Query Frame = 0
Query: 80 CRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARLTHT----DGHEPAPD--------LLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKGASSQSARLTL--DILADRVQDWLQDVASAAPGVGEVGGEDEKRGALTLALLGWE 271
CR W D RL TF P W GK + CA +GWV+VD+D + CE C + L +T + P D L A+H +CPW Q+C + FP +L+ DR +G LL+ Y S+P Q+ ID +M+ Q RL + A+ + D SAA EV + R ++L GWE
Sbjct: 81 CRTWDRGDLLRRLATFKPSNWLGKPKTASSLACAQKGWVSVDLDKIQCEYCGSNLHYTPPQDSSNHPEADSIREEFSNQLDAAHESSCPWVGQSCAESLVQFPPTPPSALIGGYKDRCDG---LLQFY------SLPIVSQSAID--QMRASRRPQIDRLLAHPQVYANDDLSFRMDNISAAETSKEVALSNYYRAQKLISLCGWE 275
BLAST of EWM28671.1 vs. NCBI_GenBank
Match: gi|720061100|ref|XP_010275066.1| (PREDICTED: uncharacterized protein LOC104610239 [Nelumbo nucifera]) HSP 1 Score: 93.9745 bits (232), Expect = 7.256e-17 Identity = 52/157 (33.12%), Postives = 71/157 (45.22%), Query Frame = 0
Query: 74 GENPLKCRPWSEADFFHRLRTFTPQRWFGKSLALTPPRCAAQGWVNVDMDTLVCELCQARL----------THTD-GHEPAPDLLSASHTLTCPWRQQACETEVSHFPLVTAQSLLSHIADRLEGCRRLLRAYHGVFSISIPEELQTLIDGVKMKKG 219
G + CRPW D RL TF P WFGK + CA +GWVNVD+D +VCE C A L T D E L H +TCPWR +C + FP +L+ DR +G + L S+P + I+ +++ +G
Sbjct: 82 GSSQPSCRPWERGDLLRRLATFKPSNWFGKPKDASSLACARRGWVNVDVDKIVCESCGANLSFVLLASWTPTEVDTAGEAFAKQLDTGHKVTCPWRGNSCAESLVQFPPTPPSALIGGYKDRCDGLLQFL---------SLPVVAASAIEQMRISRG 229 The following BLAST results are available for this feature:
BLAST of EWM28671.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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