EWM28667.1, cds1874 (CDS) Nannochloropsis gaditana

Overview
NameEWM28667.1
Unique Namecds1874
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:357988..359637 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28667.1
Productdual specificity protein phosphatase 12
Orig transcript idgnl|cribi|Naga_100002g145.4786.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:357988..359637 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016791phosphatase activity
GO:0008138protein tyrosine/serine/threonine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016311dephosphorylation
GO:0006470protein dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR000387Tyr/Dual-sp_Pase
IPR024950DUSP
IPR029021Prot-tyrosine_phosphatase-like
IPR000340Dual-sp_phosphatase_cat-dom
IPR020422Dual-sp_phosphatase_subgr_cat
Homology
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|585111090|gb|EWM28667.1| (dual specificity protein phosphatase 12 [Nannochloropsis gaditana])

HSP 1 Score: 1118.99 bits (2893), Expect = 0.000e+0
Identity = 549/549 (100.00%), Postives = 549/549 (100.00%), Query Frame = 0 
Query:    1 MQSYSKAEDNLGVDVNLLVFNPPLWPPSPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFVARDIFYESLMPRLVTRPLTHNSHGHDTDGILNRTGCATQEQCTSSGLHSCQLASEHRLYILGKRIQTTCQLSSLDAGSLLEEVEEMHRALIDQVRLYFRGACTGKHRDPTSEEREEGMVRSAERGKTGGQAVGWVARCRHCGHVLCTEEEEVRHSAPDFKASRVFDRVKAIGRAAPEAEKFRGYLEAFERRPLLHLSTVPYAILKQRRKRDGRTDPRRAVRGDGIPDIQQKDGRRPSAEISSASREGSIRRADDREVGQGCQYMYAYPRRWSLASLLGGGTASGSAVKPKDRGVEGGGTGGDFGGSEGMRSLRCPGRHCGVIVGATQARVGEVAGSARGGEACECMEALPMVVVRFRRGCLRIDTVTERRSAWSSVSGVNVDV 549
            MQSYSKAEDNLGVDVNLLVFNPPLWPPSPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFVARDIFYESLMPRLVTRPLTHNSHGHDTDGILNRTGCATQEQCTSSGLHSCQLASEHRLYILGKRIQTTCQLSSLDAGSLLEEVEEMHRALIDQVRLYFRGACTGKHRDPTSEEREEGMVRSAERGKTGGQAVGWVARCRHCGHVLCTEEEEVRHSAPDFKASRVFDRVKAIGRAAPEAEKFRGYLEAFERRPLLHLSTVPYAILKQRRKRDGRTDPRRAVRGDGIPDIQQKDGRRPSAEISSASREGSIRRADDREVGQGCQYMYAYPRRWSLASLLGGGTASGSAVKPKDRGVEGGGTGGDFGGSEGMRSLRCPGRHCGVIVGATQARVGEVAGSARGGEACECMEALPMVVVRFRRGCLRIDTVTERRSAWSSVSGVNVDV
Sbjct:    1 MQSYSKAEDNLGVDVNLLVFNPPLWPPSPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFVARDIFYESLMPRLVTRPLTHNSHGHDTDGILNRTGCATQEQCTSSGLHSCQLASEHRLYILGKRIQTTCQLSSLDAGSLLEEVEEMHRALIDQVRLYFRGACTGKHRDPTSEEREEGMVRSAERGKTGGQAVGWVARCRHCGHVLCTEEEEVRHSAPDFKASRVFDRVKAIGRAAPEAEKFRGYLEAFERRPLLHLSTVPYAILKQRRKRDGRTDPRRAVRGDGIPDIQQKDGRRPSAEISSASREGSIRRADDREVGQGCQYMYAYPRRWSLASLLGGGTASGSAVKPKDRGVEGGGTGGDFGGSEGMRSLRCPGRHCGVIVGATQARVGEVAGSARGGEACECMEALPMVVVRFRRGCLRIDTVTERRSAWSSVSGVNVDV 549
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|225708830|gb|ACO10261.1| (Dual specificity protein phosphatase 12 [Caligus rogercresseyi])

HSP 1 Score: 87.4261 bits (215), Expect = 1.573e-15
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 0 
Query:   29 PRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSA-TTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDF 165
            P  Y+G  S+A  S  L+  G++ L+SL VTP +       V         +LD ED+DLLS  PSL+ F+     + +++ VHC  G SRS + V  YL+  +G++L ++ ++I   RP V  NAGF++QL   ED 
Sbjct:   11 PGLYLGDRSSADNSTVLERLGVSALVSLDVTPPSTSLPQLVVR--------ILDTEDEDLLSHLPSLVEFIDKRLKNVETVFVHCVYGVSRSASVVAAYLMQIQGLNLSESLSKIKNMRPSVEPNAGFMKQLSLYEDM 140
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|646309243|gb|KDQ30386.1| (hypothetical protein PLEOSDRAFT_1092098 [Pleurotus ostreatus PC15])

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-15
Identity = 57/140 (40.71%), Postives = 76/140 (54.29%), Query Frame = 0 
Query:   28 SPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHV--AAHFTVGRTSLCLPDLLDVEDQ--DLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLE 163
            SP  Y+G  SAA +   L    +TH+LS+G TPAA V   A+  +  T      +  + D   D++ +A   LA  +       ILVHC AG SRS   V +YL+  KGM L +A  +I R RPQ+  NAGFLRQL  +E
Sbjct:   19 SPSLYLGPCSAASSKPFLTSNAITHVLSIGTTPAATVESVAYHRLSLTDSATSSIEKIVDSACDIIDSA---LASKNPNGGPGKILVHCSAGISRSPTVVAVYLMKRKGMSLKEALGRIVRVRPQISPNAGFLRQLKEME 155
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|552837026|ref|XP_005849274.1| (hypothetical protein CHLNCDRAFT_30542 [Chlorella variabilis] >gi|307108933|gb|EFN57172.1| hypothetical protein CHLNCDRAFT_30542 [Chlorella variabilis])

HSP 1 Score: 84.7297 bits (208), Expect = 8.377e-15
Identity = 56/142 (39.44%), Postives = 76/142 (53.52%), Query Frame = 0 
Query:   28 SPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATT-SSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFVAR 168
            +P  Y+GG  AA    AL+  G+TH+++   +   H   +       L LP L D  D DLL+   +  AF+SA      S+LVHC AGQSRS A V+ +LI  +G+ L+DA A   R RP    N+GFLRQL       +R
Sbjct:   86 APGLYIGGAGAARNLKALRKRGITHIVNAAPSVPCHFKDNPEGCFAYLSLP-LFDDADADLLAHVDASNAFISAARRCGGSVLVHCYAGQSRSAALVIAHLIASQGLGLMDAWAATRRARPCAQPNSGFLRQLALYAKRTSR 226
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|527292442|gb|EPS93372.1| (phosphatases II [Fomitopsis pinicola FP-58527 SS1])

HSP 1 Score: 82.0333 bits (201), Expect = 2.806e-14
Identity = 56/145 (38.62%), Postives = 73/145 (50.34%), Query Frame = 0 
Query:   29 PRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDS-------ILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFV 166
            P  Y+G  SAA     L+   +TH+LS+G TPA+ V    T  R SL      D    +L  A       +    SS         I VHC AG SRS + V+ YL+  +GM L +A  Q+AR RPQV  N GFLRQL  L+ ++
Sbjct:   21 PSLYLGPCSAASNKSFLENNAITHVLSIGSTPASKVEG-VTYHRLSLT-----DSATSNLSKATGEACKIIDGAVSSKGKGGGKGKIYVHCSAGISRSPSLVVAYLMKSRGMSLKEALGQVARARPQVSPNPGFLRQLKELDQYL 159
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|1087776999|ref|XP_018660123.1| (hypothetical protein TGAM01_06503 [Trichoderma gamsii] >gi|969881801|gb|KUE99003.1| hypothetical protein TGAM01_06503 [Trichoderma gamsii])

HSP 1 Score: 80.1073 bits (196), Expect = 9.658e-14
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 0 
Query:   24 LWPPSPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHV--AAHFTVGRTSLCLPDLLDVEDQ--DLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLE 163
            ++PPS   ++G VSAA +   LQ   ++H+LS+G +P + V   A+  V  T      ++ +     D++ AA      L +   +  ILVHC AG SRS A V  YL+   GM L  A  QI R RPQ   N GFL++L  LE
Sbjct:   13 VFPPS--IFIGPVSAASSLSLLQANSISHVLSVGTSPPSKVPGVAYHRVSVTDSPSSSIMKISGTTCDIIEAA------LQSNNGTGRILVHCSAGISRSPAVVAAYLMKHHGMSLRTALGQIVRARPQASPNPGFLQELKELE 148
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|225718868|gb|ACO15280.1| (Dual specificity protein phosphatase 12 [Caligus clemensi])

HSP 1 Score: 81.6481 bits (200), Expect = 1.585e-13
Identity = 54/154 (35.06%), Postives = 80/154 (51.95%), Query Frame = 0 
Query:   30 RFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQL-LFLEDFVARDI------FYESLM 176
              ++G  + A     L+  G+T L+SL + P              LC+  + D E++D+LS  PS++AF+S   +   +LVHC +G SRS AAV+ YL+V KG+   +A   + + RP V  N GF  QL LF E     DI      FY+ L+
Sbjct:   10 HLFIGERTVATDPELLKDLGVTALVSLDIHPPP-------TSLEQLCI-RIYDTEEEDILSHLPSIIAFISEQITKGKVLVHCVSGVSRSAAAVIAYLMVAKGVSFYEAVDDVIKARPHVQPNDGFCSQLRLFYEMNCTLDITNPQFRFYKFLL 155
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|527292439|gb|EPS93369.1| (phosphatases II [Fomitopsis pinicola FP-58527 SS1])

HSP 1 Score: 78.9518 bits (193), Expect = 2.566e-13
Identity = 55/145 (37.93%), Postives = 72/145 (49.66%), Query Frame = 0 
Query:   29 PRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDS-------ILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLEDFV 166
            P  Y+G  SAA     L+   +TH+LS+G TPA+ V    T  R SL      D    +L  A       +     S         I VHC AG SRS + V+ YL+  +GM L +A  Q+AR RPQV  N GFLRQL  L+ ++
Sbjct:   21 PSLYLGPCSAASNKSFLENNAITHVLSIGSTPASKVEG-VTYHRLSLT-----DSATSNLSKATGEACKIIDGAVLSKGKGGGKGKIYVHCSAGISRSPSLVVAYLMKSRGMSLKEALGQVARARPQVSPNPGFLRQLKELDQYL 159
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|927398159|ref|XP_013944925.1| (hypothetical protein TRIATDRAFT_185900, partial [Trichoderma atroviride IMI 206040] >gi|358397380|gb|EHK46755.1| hypothetical protein TRIATDRAFT_185900, partial [Trichoderma atroviride IMI 206040])

HSP 1 Score: 75.8702 bits (185), Expect = 8.469e-13
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 0 
Query:   24 LWPPSPRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHV--AAHFTVGRTSLCLPDLLDVEDQ--DLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLE 163
            ++PPS   ++G VSAA +   LQ   ++H+LS+G +P++ V   A+  V  T      ++ +     D++ AA      L ++  +  ILVHC AG SRS A V  YL+   G+ L  A  QI R RPQ   N GFL++L  LE
Sbjct:    4 VFPPS--IFIGPVSAASSISLLQANSISHVLSVGTSPSSKVPGVAYHRVSVTDSPSSSIMKISGATCDIIEAA------LQSSNGTSRILVHCSAGISRSPAVVAAYLMKHHGISLRTALGQIVRARPQASPNPGFLQELKELE 139
[Close]
BLAST of EWM28667.1 vs. NCBI_GenBank
Match: gi|669153380|ref|XP_008612252.1| (hypothetical protein SDRG_08160 [Saprolegnia diclina VS20] >gi|530736148|gb|EQC34390.1| hypothetical protein SDRG_08160 [Saprolegnia diclina VS20])

HSP 1 Score: 81.6481 bits (200), Expect = 9.189e-13
Identity = 55/163 (33.74%), Postives = 82/163 (50.31%), Query Frame = 0 
Query:   29 PRFYVGGVSAAYASGALQLFGLTHLLSLGVTPAAHVAAHFTVGRTSLCLPDLLDVEDQDLLSAAPSLLAFLSATTSSDSILVHCQAGQSRSIAAVLMYLIVCKGMDLVDAHAQIARCRPQVCVNAGFLRQLLFLED-----FVARDIFYESLMPRLVTRPLTH 186
            P+ +VG + AA+   A++   +TH+L++  T      A +    T L + DL D E  +LLS  P    FL A   +  +LVHC  G+SRS A  + Y+++ +G    DA A++   RP V +N GF  QL  LE      F A  +  ++ M R  TR   H
Sbjct:   26 PKLWVGSIHAAFNFEAIKERKITHVLNVSGT-----VATYPQDFTYLTI-DLRDKEYTNLLSCLPVTTVFLEAGMQNGGVLVHCAGGRSRSPAIAMAYIMLTQGFPYADAFAKLRAVRPVVALNTGFEDQLQCLEKAQLDVFRAHQLLLQTKMVRARTRHAQH 182
The following BLAST results are available for this feature:
BLAST of EWM28667.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111090|gb|EWM28667.1|0.000e+0100.00dual specificity protein phosphatase 12 [Nannochlo... [more]
gi|225708830|gb|ACO10261.1|1.573e-1536.96Dual specificity protein phosphatase 12 [Caligus r... [more]
gi|646309243|gb|KDQ30386.1|2.966e-1540.71hypothetical protein PLEOSDRAFT_1092098 [Pleurotus... [more]
gi|552837026|ref|XP_005849274.1|8.377e-1539.44hypothetical protein CHLNCDRAFT_30542 [Chlorella v... [more]
gi|527292442|gb|EPS93372.1|2.806e-1438.62phosphatases II [Fomitopsis pinicola FP-58527 SS1][more]
gi|1087776999|ref|XP_018660123.1|9.658e-1437.50hypothetical protein TGAM01_06503 [Trichoderma gam... [more]
gi|225718868|gb|ACO15280.1|1.585e-1335.06Dual specificity protein phosphatase 12 [Caligus c... [more]
gi|527292439|gb|EPS93369.1|2.566e-1337.93phosphatases II [Fomitopsis pinicola FP-58527 SS1][more]
gi|927398159|ref|XP_013944925.1|8.469e-1336.81hypothetical protein TRIATDRAFT_185900, partial [T... [more]
gi|669153380|ref|XP_008612252.1|9.189e-1333.74hypothetical protein SDRG_08160 [Saprolegnia dicli... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1879rna1879Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications