EWM28810.1, cds1873 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|585111233|gb|EWM28810.1| (Phosphatidate cytidylyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query: 1 MANTYAVLVFMHSLLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL 344
MANTYAVLVFMHSLLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL
Sbjct: 1 MANTYAVLVFMHSLLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL 344
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|553187630|ref|XP_005854647.1| (hypothetical protein NGA_2086500 [Nannochloropsis gaditana CCMP526] >gi|422294413|gb|EKU21713.1| hypothetical protein NGA_2086500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0 Identity = 342/344 (99.42%), Postives = 343/344 (99.71%), Query Frame = 0
Query: 1 MANTYAVLVFMHSLLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL 344
MANT+AVLVFMHSLLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGI AGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL
Sbjct: 1 MANTHAVLVFMHSLLLFVSVSSNTVKPFSFPGIRKTAFVAQQPRPSRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFLTPLLALPPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIGAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWGDDNIFVPMVASALASWLL 344
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|298712808|emb|CBJ48773.1| (Probable phytol kinase, chloroplast precursor, carboxyterminal half [Ectocarpus siliculosus]) HSP 1 Score: 196.052 bits (497), Expect = 8.739e-57 Identity = 124/265 (46.79%), Postives = 158/265 (59.62%), Query Frame = 0
Query: 87 LLALPPAT----AQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVP---WGDDNIFVPMVASALASWLL 344
+ ALPP A D G + +VG AS VW+KLWT LA + + SRK++H + PLF++ WPFF+ ARLFAA VP+LQ V + A+GL+ P NDS + LV AISRSG +E L GPL Y + ++L TVV WR SVVGL+A+ QMA GDGMAD+VGR++G KW KS GS+AF F+ SVA+I WF+ +GL+ A + A IS AAVEL P GDDNI VP+ A L L
Sbjct: 54 VCALPPPGISPLAWDAGVSTVVGAASIVWVKLWTGLARRDKMKPQVSRKVVHTTAAPLFMILWPFFTNRPCARLFAAAVPMLQAVRLAAAGLSG--DPENNDS----------SSNELVKAISRSGKASETLDGPLKYSLAIVLITVVEWRTSVVGLIAMMQMAVGDGMADLVGRQFGKHKWRKGGEKSMEGSAAFVSGSFLASVAMIQWFHHFGLLSVTPTEAAARAAAISFASAAVELFPPRLVGDDNISVPVTALVLGRLLF 306
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|551631807|ref|XP_005818786.1| (hypothetical protein GUITHDRAFT_149059 [Guillardia theta CCMP2712] >gi|428162686|gb|EKX31806.1| hypothetical protein GUITHDRAFT_149059 [Guillardia theta CCMP2712]) HSP 1 Score: 188.348 bits (477), Expect = 6.735e-54 Identity = 111/241 (46.06%), Postives = 147/241 (61.00%), Query Frame = 0
Query: 106 MASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSP-----AKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVP--------WGDDNIFVP 333
+ + WL +W++LA G ID K SRK++HCGSGPLFLL WP FS+ TA L A+ + L A + L P+ A + G + + SGLV AISRSG EV++GPLIY ++LL V W++++ + A+ QMAAGDG+ADIVGRRWG KW +S +KS AGS F + VV +A + WFN +GL+ V KV LIS+LCAAVEL+P GDDN+ VP
Sbjct: 51 VGAGAWLAIWSNLAKYGMIDPKVSRKIVHCGSGPLFLLTWPLFSSSHTAPLLAS-IGLSVQSAADSDELPAVPTINALRLAGEEEGRGESDGRRRRDSGLVTAISRSGRSEEVMQGPLIYTLVLLWGVVGGWQQAM-SITAITQMAAGDGLADIVGRRWGVVKWPWSDSKSIAGSLGFVVGASVVMMAELLWFNAFGLLSFKGTEVYDKVILISLLCAAVELIPLDKVLPGRLGDDNVTVP 289
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|922404604|ref|XP_013469326.1| (phytol kinase [Medicago truncatula] >gi|657404741|gb|KEH43364.1| phytol kinase [Medicago truncatula]) HSP 1 Score: 176.407 bits (446), Expect = 3.081e-49 Identity = 105/268 (39.18%), Postives = 154/268 (57.46%), Query Frame = 0
Query: 80 NVRFLTPLLALPPATAQDL--GGAALVGMASAVWLKLWT--SLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWG---DDNIFVPMVASALA 340
N RF+T + PA AQDL A VG+ + +++ L ID SRKL+H SG LFL+ WP FS AR FAA VPL+ + ++ +GL+ P GL+ +++R G+P E+LRGPL YV IL+L+ +VFWRES +G+VA+A M GDG+ADI+GRR+G+ K ++ KS+AGS A + GF+VS+ ++ +++ G V + +VA +S + VE +P DDNI VP+V A+
Sbjct: 53 NERFVTRFIV--PANAQDLIHNVGATVGVLGGAYALVFSFDDLTRRNVIDQGLSRKLVHILSGLLFLVSWPIFSNSLEARYFAAFVPLVNFLRLLVNGLSLVTDP------------------GLIKSVTRKGDPKELLRGPLYYVGILMLSALVFWRESPIGVVALAMMCGGDGVADIIGRRYGSMKIPYNQKKSWAGSIAMLIFGFLVSIGMLYYYSALGHVQFDLWNIVPRVAFVSFVATVVESLPITEVVDDNISVPLVTMAVT 300
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|502118218|ref|XP_004496158.1| (PREDICTED: probable phytol kinase 1, chloroplastic [Cicer arietinum]) HSP 1 Score: 172.555 bits (436), Expect = 1.141e-47 Identity = 115/325 (35.38%), Postives = 172/325 (52.92%), Query Frame = 0
Query: 46 SRLSPLSSRSYAPSSPALFTIPHTSGIVSIRKVSNVRFL------TPLLALP---------PATAQDL--GGAALVGMASAVWLKLW--TSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAW--------FNFWGLVPALTAGVACKVALISILCAAVELVPWG---DDNIFVPMVASALA 340
SRL P S ++ P + + T H I R VRFL P++ L P AQDL G A +G+ + ++ ++ SRKL+H SG LFL+ WP FS AR FAA VPL+ + ++ +GL+ + GL+ +++R G+P E+LRGPL YVVIL+L VVFWR+S +G+V++A M GDG+ADI+GRR+G+ K ++ KS+AGS + + GF+VS+ ++ + F++W +VP +VAL+SI+ VE +P DDNI VP+ A+A
Sbjct: 6 SRLFPSPSVNHRPPAQST-TTRHLPWIKLTRTNDTVRFLCSPAIIKPVIRLDERFVARFVVPENAQDLIHNGGATIGVLGGAYALVFAFDDFTRKNILNQGLSRKLVHILSGLLFLVSWPIFSNSPKARYFAAFVPLVNFLRLLVNGLS------------------LTSDQGLIKSVTRKGDPKELLRGPLYYVVILMLCAVVFWRDSPIGVVSLAMMCGGDGVADIIGRRYGSMKIPYNQKKSWAGSISMLIFGFLVSIGMLYYYSALGHVQFDWWNIVP--------RVALVSIVATVVESLPITDVVDDNISVPLATIAVA 303
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|551584035|ref|XP_005777419.1| (hypothetical protein EMIHUDRAFT_469241 [Emiliania huxleyi CCMP1516] >gi|485629682|gb|EOD24990.1| hypothetical protein EMIHUDRAFT_469241 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 172.17 bits (435), Expect = 2.900e-47 Identity = 113/275 (41.09%), Postives = 150/275 (54.55%), Query Frame = 0
Query: 91 PPATAQDLGGAALVGMASAVWLKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAF--------------------ALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVP------------WGDDNIFVP 333
P A +D A++ A+ +W+ W+ LA G I SRK+IH GS PLF+LCWP FS +A + A VPLLQI+ + +G A+ P G + + LV AISRSG+ +E L GP +Y ++LL+ATV+ WR S VA+ QMA GDG+ADIVGRR+G+ KW FS +KS AGS+AF A S F S+ LI+ F+ +G A A V LIS+L AAVEL+P DDN+ VP
Sbjct: 60 PAALGRDAASASVCAGAAWMWVAFWSKLAADGRIQPNLSRKIIHTGSAPLFMLCWPLFSPAPSAPILAGAVPLLQIIRLYRAGRAQPAQPTP------VGAAEADDTADLVKAISRSGSRSEALGGPFLYTLVLLVATVLGWR-SPAAAVAICQMAVGDGVADIVGRRYGSVKWPFSPSKSVAGSAAFVASTAETEIEPPPARRTKPRAASAFSASLGLISLFHAFGFTALTAAAAAPAVLLISLLSAAVELLPTRPAAVELLPAELADDNVSVP 327
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|645224087|ref|XP_008218940.1| (PREDICTED: probable phytol kinase 1, chloroplastic isoform X1 [Prunus mume]) HSP 1 Score: 170.244 bits (430), Expect = 8.063e-47 Identity = 103/249 (41.37%), Postives = 147/249 (59.04%), Query Frame = 0
Query: 96 QDLGGAALVGMASAVWLKL-WTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWG---DDNIFVPMVASALA 340
QD G A V +A A L L + +L + SRKL+H SG LF+L WP FS AR FA+ VPL+ + ++ GL S N+ GLV +++R GNP E+LRGPL YV+IL+L +VFWRES VG+V++A M GDG+ADI+GR++G+ K ++ KS+AGS + L GF++S+ ++ +++F G KVALIS++ VE +P DDNI VP+V+ A A
Sbjct: 73 QDAGATAFV-LAGAYGLVLCFDNLTQRNLLQQSLSRKLVHILSGLLFMLSWPIFSTSTAARYFASVVPLVNCLRLLLHGL----SIVTNE--------------GLVKSVTREGNPKELLRGPLYYVLILILCALVFWRESPVGVVSLAMMCGGDGVADIMGRKFGSIKIPYNQKKSWAGSISMFLFGFLISIGMLYYYSFLGYFQLNWVETVEKVALISLVATIVESLPITEVLDDNISVPLVSMAAA 302
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|901826675|gb|KMZ76020.1| (Phosphatidate cytidylyltransferase family protein, expressed [Zostera marina]) HSP 1 Score: 169.474 bits (428), Expect = 1.460e-46 Identity = 96/247 (38.87%), Postives = 140/247 (56.68%), Query Frame = 0
Query: 92 PATAQDLGGAALVGMASAVWL-KLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWG---DDNIFVPM 334
P QD GA +V + A L +++ L ID K SRK++H SG LF+ WP FS+ AR+FA+ VPLL ++ GL+ + K GL+ +++R GNP E+LRGPL YV++LL + FWR S VG++++ M+AGDG ADIVGRR+G K ++ KS AGS + SGF S+ ++ +++ G + + + KVAL+S + VE P G DDNI VP+
Sbjct: 72 PTIIQD-AGATVVSLGGAYSLVRIFDVLTDQNVIDQKLSRKIVHVLSGLLFVFSWPLFSSSMEARIFASIVPLLNSFRLVIYGLS------------------LAKDEGLIKSVTREGNPKELLRGPLYYVLVLLFCVITFWRNSPVGIISLTMMSAGDGFADIVGRRYGKVKLPYNGDKSLAGSMSMFFSGFFTSLGMLYYYSSLGFIELDWSNMVEKVALVSGVATIVESFPIGDVLDDNISVPL 299
BLAST of EWM28810.1 vs. NCBI_GenBank
Match: gi|593687283|ref|XP_007144301.1| (hypothetical protein PHAVU_007G144700g [Phaseolus vulgaris] >gi|561017491|gb|ESW16295.1| hypothetical protein PHAVU_007G144700g [Phaseolus vulgaris]) HSP 1 Score: 169.088 bits (427), Expect = 1.747e-46 Identity = 100/260 (38.46%), Postives = 150/260 (57.69%), Query Frame = 0
Query: 92 PATAQDL--GGAALVGMASAVW--LKLWTSLAISGAIDSKDSRKLIHCGSGPLFLLCWPFFSAEGTARLFAAGVPLLQIVAMIASGLAKAPSPAKNDSGIRAGESAMGKPSGLVAAISRSGNPAEVLRGPLIYVVILLLATVVFWRESVVGLVAVAQMAAGDGMADIVGRRWGAQKWSFSSTKSYAGSSAFALSGFVVSVALIAWFNFWGLVPALTAGVACKVALISILCAAVELVPWG---DDNIFVPMVASALASWLL 344
PATA+DL A VG+ + ++ + L + SRKL+H SG LFL WP FS AR FAA VPL+ + ++ +GL+ A GL+ +++R G+P E+LRGPL YV+IL L +VFWRES +G+V++A M GDG+ADI+GR++G+ K ++ KS+AGS + + GF+VS+ ++ +++ G V A +VA IS + VE +P DDNI VP+V A+A ++L
Sbjct: 60 PATAEDLLYNAGATVGVLGGAYALVRAFDELTRRNILHQGLSRKLVHILSGLLFLFSWPIFSNSPKARYFAAFVPLVNCLRLLMNGLSLASD------------------EGLIKSLTREGDPEELLRGPLYYVLILTLCALVFWRESPIGVVSLAMMCGGDGVADIIGRKYGSMKIPYNQNKSWAGSISMLVFGFLVSIGILYYYSVLGHVQLDWASTVPRVAFISFVATIVESLPITKIVDDNISVPLVTMAVAFFIL 301 The following BLAST results are available for this feature:
BLAST of EWM28810.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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