EWM28833.1, cds1843 (CDS) Nannochloropsis gaditana

Overview
NameEWM28833.1
Unique Namecds1843
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:288290..288403 +
Alignment locationCM002458.1:288579..289013 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28833.1
Productredoxin domain protein
Orig transcript idgnl|cribi|Naga_100199g1.9703.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:288290..288403 +
CM002458.1supercontigCM002458.1:288579..289013 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0008152metabolic process
GO:0019725cellular homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR013740Redoxin
Homology
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|585111257|gb|EWM28833.1| (redoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 370.933 bits (951), Expect = 6.060e-130
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MLSVFSRVRRPTNLPSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRGKVVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            MLSVFSRVRRPTNLPSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRGKVVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV
Sbjct:    1 MLSVFSRVRRPTNLPSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRGKVVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|553190640|ref|XP_005855233.1| (peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526] >gi|422293835|gb|EKU21135.1| peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 367.851 bits (943), Expect = 9.626e-129
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MLSVFSRVRRPTNLPSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRGKVVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            MLSVFSRVRRP+NLPSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRGKVVLIGLPAAFSPTCSEKHVPGYLAHAR+FKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV
Sbjct:    1 MLSVFSRVRRPSNLPSFLALTTRGINTGSKVPTLPLKEVTGDTVSDVSSNDFFRGKVVLIGLPAAFSPTCSEKHVPGYLAHARDFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|653047031|ref|WP_027298630.1| (peroxiredoxin [Rhodospirillales bacterium URHD0088])

HSP 1 Score: 164.081 bits (414), Expect = 1.528e-48
Identity = 81/157 (51.59%), Postives = 113/157 (71.97%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFFRGK-VVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLK 180
            I  G KVP++ LK++T + V +VS++DFF+GK VVL  +P AF+PTCS KHVPG++ +    K KGVD +A L+VND F M AW K Q    ++  +ADGNG+ T A+GLELD T   LGKR KR++MV+++G+VK+L++E  G  + VSSAE+ LK
Sbjct:    3 IKVGDKVPSVKLKQMTAEGVKEVSTDDFFKGKKVVLFAVPGAFTPTCSAKHVPGFVQNDAALKAKGVDAVACLSVNDAFVMGAWGKDQKSDGKVVMLADGNGDFTRAVGLELDATANGLGKRSKRYAMVVDNGVVKTLNVEAPGA-FEVSSAEAILK 158          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|1131010386|ref|WP_075771597.1| (peroxiredoxin [Rhodocista sp. MIMtkB3])

HSP 1 Score: 163.696 bits (413), Expect = 2.166e-48
Identity = 79/159 (49.69%), Postives = 109/159 (68.55%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFFRGK-VVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            IN G ++P++ LK +T   + ++S++D F+GK VVL  +P AF+PTCS KH+PG++ HA   K KGV +I  +AVND F M+AW K   +  +I+ + DGNG LT ALGLE+D T   LG R +RF++V EDG+VK L +E  G  + VSSAE  LKQV
Sbjct:    3 INVGDRIPSVTLKHLTESGMQEISTDDIFKGKKVVLFSVPGAFTPTCSAKHLPGFVEHAEELKAKGVQEIVCMAVNDPFVMQAWGKQNNVAGKITMLPDGNGALTKALGLEMDGTAYNLGHRGQRFALVAEDGVVKGLYVEKPGA-FEVSSAEYVLKQV 160          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|1088435100|gb|OHC72396.1| (hypothetical protein A3B62_00010 [Rhodospirillales bacterium RIFCSPLOWO2_01_FULL_65_14])

HSP 1 Score: 162.925 bits (411), Expect = 7.646e-48
Identity = 79/160 (49.38%), Postives = 109/160 (68.12%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSD-VSSNDFFRGKVV-LIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            I  G K+P++ L  V GD   + +S++D F  K+V L GLP AF+PTCS KH+PGY+ HA   ++ G D I  L+VND F M AW K QG  D+++ VADG+ + T A+GLELDLT   LG RC+RFSM++EDG+VK +++EP  T   VS AE  L+++
Sbjct:    3 IKIGDKIPSMTL-HVMGDKGPEAISTDDLFADKIVALFGLPGAFTPTCSAKHLPGYIEHADKLREYGADDIVCLSVNDAFVMHAWGKDQGAKDKVTMVADGSAKFTRAVGLELDLTDRGLGVRCQRFSMIVEDGVVKDIAVEPKPTEAVVSGAEKMLERM 161          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|931392380|gb|KPJ81841.1| (alkyl hydroperoxide reductase [Gammaproteobacteria bacterium SG8_30])

HSP 1 Score: 162.155 bits (409), Expect = 9.144e-48
Identity = 77/159 (48.43%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFF-RGKVVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            I  G ++P   L  +T D  S VS+N+ F  GKVV+  +P AF+PTCS +H+PG++ H  + K KGVD++  +AVND F M AW K+ G+GD I   ADGNGE T +LGLELD +   +GKR +RF+M++EDG+VK++ +E  G  + VSSAE  L Q+
Sbjct:    3 IKAGDRIPAATLTVMTADGPSKVSTNELFGAGKVVMFSVPGAFTPTCSARHLPGFVDHIGDIKSKGVDRVVCIAVNDVFVMDAWGKSAGVGDRIVMAADGNGEFTRSLGLELDASGFGMGKRGQRFAMIVEDGVVKTVDVEGPGE-FKVSSAEHVLGQL 160          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|1180071307|ref|WP_083591138.1| (peroxiredoxin [Aurantimonas sp. 22II-16-19i] >gi|1178168383|gb|ORE97432.1| peroxiredoxin-like protein [Aurantimonas sp. 22II-16-19i])

HSP 1 Score: 162.155 bits (409), Expect = 9.641e-48
Identity = 82/159 (51.57%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFFRGK-VVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            I  G K+P   +K  T D  +D+S+   F GK VVL G+P AF+PTCS  H+PG+L H   F+QKGVD IAV+AVND F M AW K+     +I F++DGNGE T ALGL++DL+ A LG R KR+SM++EDG+VK L+IE        SSAE+ L+Q+
Sbjct:    3 IAVGDKIPNATVKTRTEDGPADLSTESIFSGKTVVLFGVPGAFTPTCSMNHLPGFLTHNDEFRQKGVDTIAVVAVNDIFVMGAWEKSTEASGKILFLSDGNGEFTKALGLDIDLSVAGLGTRSKRYSMLVEDGVVKQLNIEESPGQADKSSAEALLEQM 161          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|1113137057|gb|OJU11965.1| (peroxiredoxin [Alphaproteobacteria bacterium 64-11])

HSP 1 Score: 160.614 bits (405), Expect = 3.348e-47
Identity = 80/159 (50.31%), Postives = 110/159 (69.18%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFFRGK-VVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            I  G K+P++ L E+     + V ++DFF+G+ V L  LP AF+PTCS KHVPG++A+    + KGVD IA L+VND F M AW K Q  G ++  +ADGNGE T+A+GL +D TK  +GKR +R+SM++EDG+VKSL+IE  G  + VSSAE  L Q+
Sbjct:    3 IKAGDKIPSVTLMEMQDGKPTPVKTDDFFKGRRVALFALPGAFTPTCSAKHVPGFVANYDALRAKGVDAIACLSVNDAFVMGAWGKDQNSGGKVHMLADGNGEFTDAVGLVMDGTKFGMGKRSQRYSMIVEDGVVKSLNIEEPGA-FEVSSAEHMLGQL 160          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|1088278631|gb|OHB33746.1| (alkyl hydroperoxide reductase [Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10])

HSP 1 Score: 160.614 bits (405), Expect = 3.422e-47
Identity = 78/159 (49.06%), Postives = 112/159 (70.44%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFFRGK-VVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            I  G K+P++ L + T D    VSS+DFF GK V L  +P AF+PTCS +H+PG++  A   K KGVD IA L+VND F MKAW +AQ +G++I  +ADG+G+ T A+GLE+D  K  +G+R +R+SM++EDG+VKSL++E  G  + VSSA+  + Q+
Sbjct:    3 IKVGDKLPSVTLTQATADGPKPVSSDDFFAGKTVALFAVPGAFTPTCSARHLPGFVDKADEIKGKGVDVIACLSVNDAFVMKAWGEAQSVGEDIVMLADGSGDFTKAVGLEMDARKFGMGERSQRYSMIVEDGVVKSLNVEEPGE-FKVSSADHLVAQL 160          
BLAST of EWM28833.1 vs. NCBI_GenBank
Match: gi|636823906|ref|WP_024349997.1| (peroxiredoxin [Aurantimonas coralicida])

HSP 1 Score: 159.844 bits (403), Expect = 7.411e-47
Identity = 80/159 (50.31%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   25 INTGSKVPTLPLKEVTGDTVSDVSSNDFFRGK-VVLIGLPAAFSPTCSEKHVPGYLAHARNFKQKGVDKIAVLAVNDFFTMKAWAKAQGIGDEISFVADGNGELTNALGLELDLTKAVLGKRCKRFSMVLEDGIVKSLSIEPDGTGYTVSSAESTLKQV 182
            I  G K+P   LK  T D  +D+S+++ F GK VVL  +P AF+PTCS  H+PG+L H    + KGVD IAV+AVND F M AW KA     +I F++DGNGE T ALGL++DL+ A LG R KR+SM++EDG+VKSL++E        S+AE+ L+Q+
Sbjct:    3 IGIGDKLPNATLKTKTSDGPADLSTDEIFAGKKVVLFAVPGAFTPTCSMNHLPGFLTHNDEIRAKGVDTIAVVAVNDIFVMGAWEKANDAAGKILFLSDGNGEFTKALGLDIDLSVAGLGLRSKRYSMIVEDGVVKSLNVEESPGQAERSTAEAVLEQL 161          
The following BLAST results are available for this feature:
BLAST of EWM28833.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111257|gb|EWM28833.1|6.060e-130100.00redoxin domain protein [Nannochloropsis gaditana][more]
gi|553190640|ref|XP_005855233.1|9.626e-12998.90peroxiredoxin 5, atypical 2-Cys peroxiredoxin [Nan... [more]
gi|653047031|ref|WP_027298630.1|1.528e-4851.59peroxiredoxin [Rhodospirillales bacterium URHD0088... [more]
gi|1131010386|ref|WP_075771597.1|2.166e-4849.69peroxiredoxin [Rhodocista sp. MIMtkB3][more]
gi|1088435100|gb|OHC72396.1|7.646e-4849.38hypothetical protein A3B62_00010 [Rhodospirillales... [more]
gi|931392380|gb|KPJ81841.1|9.144e-4848.43alkyl hydroperoxide reductase [Gammaproteobacteria... [more]
gi|1180071307|ref|WP_083591138.1|9.641e-4851.57peroxiredoxin [Aurantimonas sp. 22II-16-19i] >gi|1... [more]
gi|1113137057|gb|OJU11965.1|3.348e-4750.31peroxiredoxin [Alphaproteobacteria bacterium 64-11... [more]
gi|1088278631|gb|OHB33746.1|3.422e-4749.06alkyl hydroperoxide reductase [Phenylobacterium sp... [more]
gi|636823906|ref|WP_024349997.1|7.411e-4750.31peroxiredoxin [Aurantimonas coralicida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1848rna1848Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications