EWM28839.1, cds1840 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|585111263|gb|EWM28839.1| (iron-sulfur protein [Nannochloropsis gaditana]) HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query: 1 MSRTHVASKLLRGVALTSCLRGGGARSSPFLSASSVAPGSAFVRGRTSLSRIATIREGRIPQEGSKAHQMQHRKARASTMAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
MSRTHVASKLLRGVALTSCLRGGGARSSPFLSASSVAPGSAFVRGRTSLSRIATIREGRIPQEGSKAHQMQHRKARASTMAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV
Sbjct: 1 MSRTHVASKLLRGVALTSCLRGGGARSSPFLSASSVAPGSAFVRGRTSLSRIATIREGRIPQEGSKAHQMQHRKARASTMAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|553190622|ref|XP_005855229.1| (iron-sulfur protein [Nannochloropsis gaditana CCMP526] >gi|422293831|gb|EKU21131.1| iron-sulfur protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 380.563 bits (976), Expect = 2.424e-132 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query: 80 MAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
MAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV
Sbjct: 1 MAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 186
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|675204531|ref|XP_008911150.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566015153|gb|ETI38064.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567952610|gb|ETK78282.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567981269|gb|ETL31712.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568010757|gb|ETL84940.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568040661|gb|ETM38109.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568088520|gb|ETN03377.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570318885|gb|ETO66833.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570942692|gb|ETP07949.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570973331|gb|ETP35992.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 156.377 bits (394), Expect = 1.595e-44 Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = 0
Query: 149 SSPPRRPRAA----PLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
++PP R R PL LT+ A RIKELLA+K P IG+RLG K RGCNGLSYTMNYA+ + K +EEV GV VFVEP AL HVVGT MD++ T +S EF F NPNAKG CGCGESFNV
Sbjct: 27 AAPPTRRRLRELPPPLNLTDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVTKNGVRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|301093476|ref|XP_002997584.1| (iron-sulfur cluster assembly protein, putative [Phytophthora infestans T30-4] >gi|262110547|gb|EEY68599.1| iron-sulfur cluster assembly protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 154.451 bits (389), Expect = 7.926e-44 Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 0
Query: 149 SSPPRRPRAA----PLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
++PP R R PL LT+ A RIKELLA+K P IG+RLG K RGCNGLSYTMNYA+ + K +EEV G VFVEP AL HVVGT MD++ T +S EF F NPNAKG CGCGESFNV
Sbjct: 27 ATPPTRRRLRELPPPLNLTDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSKNGARVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 146
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|953486832|emb|CEG48894.1| (iron-sulfur protein [Plasmopara halstedii]) HSP 1 Score: 154.066 bits (388), Expect = 1.234e-43 Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = 0
Query: 159 PLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
PL+LT+ A +RIKELL +K P IG+RLG K RGCNGLSYTMNYAE + +EEV GV VFVEP AL HVVGT MD++ T +S EF F NPNAKG CGCGESFNV
Sbjct: 42 PLKLTDAAATRIKELLVNK-PDAIGIRLGVKTRGCNGLSYTMNYAEKKENLEEEVNKNGVRVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 147
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|698798546|ref|XP_009832302.1| (hypothetical protein H257_08194 [Aphanomyces astaci] >gi|574112473|gb|ETV77965.1| hypothetical protein H257_08194 [Aphanomyces astaci]) HSP 1 Score: 152.14 bits (383), Expect = 5.304e-43 Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 0
Query: 150 SPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
S RR A ++LT+ A +RIKEL+AS+ P IG+RLG + RGC+GLSYTMNYA + K DEEV GV VF+E AL HVVGT MDY+ T +S EFTF NPNAKG CGCGESFNV
Sbjct: 21 SRLRREVPAAIKLTDEAAARIKELMASR-PDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVAEKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 135
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|673037850|ref|XP_008872886.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574471682|gb|ETV98689.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 151.369 bits (381), Expect = 9.971e-43 Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0
Query: 150 SPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
S RR A ++LT+ A +RIKEL+A++ P IG+RLG + RGC+GLSYTMNYA + K DEEV GV VF+E AL HVVGT MDY+ T +S EFTF NPNAKG CGCGESFNV
Sbjct: 19 SRLRREIPAAIKLTDEAAARIKELMANQ-PDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVSDKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 133
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|813164298|ref|XP_012203209.1| (hypothetical protein SPRG_08579 [Saprolegnia parasitica CBS 223.65] >gi|641532174|gb|KDO26217.1| hypothetical protein SPRG_08579 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 149.828 bits (377), Expect = 4.177e-42 Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 0
Query: 145 FPRPSSP-PRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFN 264
P+ +P RR AP+ LT+ A RIKELL +K P IG+R+G + RGC+GLSYTMNYA + KF+EEV GV VFVEP AL H+VGT MDY+ T +S EFTF NPNAKG CGCGESFN
Sbjct: 11 LPKVKAPRVRREVPAPIILTQGAADRIKELLENK-PDAIGLRIGVRTRGCSGLSYTMNYATEKIKFEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFN 130
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|1072224804|gb|OEU09553.1| (hypothetical protein FRACYDRAFT_173634 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 150.984 bits (380), Expect = 9.073e-42 Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = 0
Query: 152 PRRPRAA----PLQLTERAVSRIKELL-ASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
PRR R P+ +TERA RIKE+L IG+RLG KRRGCNGLSYT+NYA +P+ D E+ GVTVFVEP AL VVGT MD+EE+ELS EFTF NPN+KG+CGCGESF V
Sbjct: 81 PRRRRTLKTKDPIVVTERAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKDLEMDSSGVTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|1210530937|dbj|GAX10477.1| (iron-sulfur cluster assembly protein [Fistulifera solaris]) HSP 1 Score: 149.058 bits (375), Expect = 1.206e-41 Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 0
Query: 149 SSPPRRPRA---APLQLTERAVSRIKELL-ASKGPSVIGVRLGTKRRGCNGLSYTMNYA-ETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
+SPPRR + P+ LT A +RI+ELL IG+RLG KRRGCNGLSYT+NYA E PK D +V+ G+ VF+EP AL +VVGT MD+E+TE+S EFTFNNPN+KG CGCGESFNV
Sbjct: 31 NSPPRRRQIRDKDPIILTNSAANRIRELLNGDNAKGAIGIRLGVKRRGCNGLSYTLNYAFEENPK-DLKVESHGLNVFIEPMALFNVVGTTMDWEDTEMSSEFTFNNPNSKGSCGCGESFNV 151 The following BLAST results are available for this feature:
BLAST of EWM28839.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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