EWM28839.1, cds1840 (CDS) Nannochloropsis gaditana

Overview
NameEWM28839.1
Unique Namecds1840
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:283508..284305 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28839.1
Productiron-sulfur protein
Orig transcript idgnl|cribi|Naga_100199g3.9709.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:283508..284305 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0051536iron-sulfur cluster binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0019538protein metabolic process
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR017870FeS_cluster_insertion_CS
IPR016092FeS_cluster_insertion
IPR000361FeS_biogenesis
Homology
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|585111263|gb|EWM28839.1| (iron-sulfur protein [Nannochloropsis gaditana])

HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query:    1 MSRTHVASKLLRGVALTSCLRGGGARSSPFLSASSVAPGSAFVRGRTSLSRIATIREGRIPQEGSKAHQMQHRKARASTMAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            MSRTHVASKLLRGVALTSCLRGGGARSSPFLSASSVAPGSAFVRGRTSLSRIATIREGRIPQEGSKAHQMQHRKARASTMAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV
Sbjct:    1 MSRTHVASKLLRGVALTSCLRGGGARSSPFLSASSVAPGSAFVRGRTSLSRIATIREGRIPQEGSKAHQMQHRKARASTMAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|553190622|ref|XP_005855229.1| (iron-sulfur protein [Nannochloropsis gaditana CCMP526] >gi|422293831|gb|EKU21131.1| iron-sulfur protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 380.563 bits (976), Expect = 2.424e-132
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:   80 MAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            MAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV
Sbjct:    1 MAAATTSKLSSMEVEHGQVHEHPSQVPIPPASASNAPTSIDSSSRDKSKSEVPPTIPPSPPPAESFPRPSSPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 186          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|675204531|ref|XP_008911150.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566015153|gb|ETI38064.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567952610|gb|ETK78282.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567981269|gb|ETL31712.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568010757|gb|ETL84940.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568040661|gb|ETM38109.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568088520|gb|ETN03377.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570318885|gb|ETO66833.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570942692|gb|ETP07949.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570973331|gb|ETP35992.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 156.377 bits (394), Expect = 1.595e-44
Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = 0
Query:  149 SSPPRRPRAA----PLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            ++PP R R      PL LT+ A  RIKELLA+K P  IG+RLG K RGCNGLSYTMNYA+ + K +EEV   GV VFVEP AL HVVGT MD++ T +S EF F NPNAKG CGCGESFNV
Sbjct:   27 AAPPTRRRLRELPPPLNLTDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVTKNGVRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|301093476|ref|XP_002997584.1| (iron-sulfur cluster assembly protein, putative [Phytophthora infestans T30-4] >gi|262110547|gb|EEY68599.1| iron-sulfur cluster assembly protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 154.451 bits (389), Expect = 7.926e-44
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 0
Query:  149 SSPPRRPRAA----PLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            ++PP R R      PL LT+ A  RIKELLA+K P  IG+RLG K RGCNGLSYTMNYA+ + K +EEV   G  VFVEP AL HVVGT MD++ T +S EF F NPNAKG CGCGESFNV
Sbjct:   27 ATPPTRRRLRELPPPLNLTDAAAERIKELLANK-PDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSKNGARVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 146          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|953486832|emb|CEG48894.1| (iron-sulfur protein [Plasmopara halstedii])

HSP 1 Score: 154.066 bits (388), Expect = 1.234e-43
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  159 PLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            PL+LT+ A +RIKELL +K P  IG+RLG K RGCNGLSYTMNYAE +   +EEV   GV VFVEP AL HVVGT MD++ T +S EF F NPNAKG CGCGESFNV
Sbjct:   42 PLKLTDAAATRIKELLVNK-PDAIGIRLGVKTRGCNGLSYTMNYAEKKENLEEEVNKNGVRVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 147          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|698798546|ref|XP_009832302.1| (hypothetical protein H257_08194 [Aphanomyces astaci] >gi|574112473|gb|ETV77965.1| hypothetical protein H257_08194 [Aphanomyces astaci])

HSP 1 Score: 152.14 bits (383), Expect = 5.304e-43
Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  150 SPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            S  RR   A ++LT+ A +RIKEL+AS+ P  IG+RLG + RGC+GLSYTMNYA  + K DEEV   GV VF+E  AL HVVGT MDY+ T +S EFTF NPNAKG CGCGESFNV
Sbjct:   21 SRLRREVPAAIKLTDEAAARIKELMASR-PDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVAEKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 135          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|673037850|ref|XP_008872886.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574471682|gb|ETV98689.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 151.369 bits (381), Expect = 9.971e-43
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 0
Query:  150 SPPRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            S  RR   A ++LT+ A +RIKEL+A++ P  IG+RLG + RGC+GLSYTMNYA  + K DEEV   GV VF+E  AL HVVGT MDY+ T +S EFTF NPNAKG CGCGESFNV
Sbjct:   19 SRLRREIPAAIKLTDEAAARIKELMANQ-PDAIGIRLGVRTRGCSGLSYTMNYATEKQKLDEEVSDKGVKVFIESKALFHVVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNV 133          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|813164298|ref|XP_012203209.1| (hypothetical protein SPRG_08579 [Saprolegnia parasitica CBS 223.65] >gi|641532174|gb|KDO26217.1| hypothetical protein SPRG_08579 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 149.828 bits (377), Expect = 4.177e-42
Identity = 74/121 (61.16%), Postives = 88/121 (72.73%), Query Frame = 0
Query:  145 FPRPSSP-PRRPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFN 264
             P+  +P  RR   AP+ LT+ A  RIKELL +K P  IG+R+G + RGC+GLSYTMNYA  + KF+EEV   GV VFVEP AL H+VGT MDY+ T +S EFTF NPNAKG CGCGESFN
Sbjct:   11 LPKVKAPRVRREVPAPIILTQGAADRIKELLENK-PDAIGLRIGVRTRGCSGLSYTMNYATEKIKFEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFN 130          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|1072224804|gb|OEU09553.1| (hypothetical protein FRACYDRAFT_173634 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 150.984 bits (380), Expect = 9.073e-42
Identity = 74/119 (62.18%), Postives = 86/119 (72.27%), Query Frame = 0
Query:  152 PRRPRAA----PLQLTERAVSRIKELL-ASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            PRR R      P+ +TERA  RIKE+L        IG+RLG KRRGCNGLSYT+NYA  +P+ D E+   GVTVFVEP AL  VVGT MD+EE+ELS EFTF NPN+KG+CGCGESF V
Sbjct:   81 PRRRRTLKTKDPIVVTERAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKDLEMDSSGVTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199          
BLAST of EWM28839.1 vs. NCBI_GenBank
Match: gi|1210530937|dbj|GAX10477.1| (iron-sulfur cluster assembly protein [Fistulifera solaris])

HSP 1 Score: 149.058 bits (375), Expect = 1.206e-41
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 0
Query:  149 SSPPRRPRA---APLQLTERAVSRIKELL-ASKGPSVIGVRLGTKRRGCNGLSYTMNYA-ETRPKFDEEVQVGGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
            +SPPRR +     P+ LT  A +RI+ELL        IG+RLG KRRGCNGLSYT+NYA E  PK D +V+  G+ VF+EP AL +VVGT MD+E+TE+S EFTFNNPN+KG CGCGESFNV
Sbjct:   31 NSPPRRRQIRDKDPIILTNSAANRIRELLNGDNAKGAIGIRLGVKRRGCNGLSYTLNYAFEENPK-DLKVESHGLNVFIEPMALFNVVGTTMDWEDTEMSSEFTFNNPNSKGSCGCGESFNV 151          
The following BLAST results are available for this feature:
BLAST of EWM28839.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111263|gb|EWM28839.1|0.000e+0100.00iron-sulfur protein [Nannochloropsis gaditana][more]
gi|553190622|ref|XP_005855229.1|2.424e-132100.00iron-sulfur protein [Nannochloropsis gaditana CCMP... [more]
gi|675204531|ref|XP_008911150.1|1.595e-4463.64hypothetical protein, variant 2 [Phytophthora para... [more]
gi|301093476|ref|XP_002997584.1|7.926e-4462.81iron-sulfur cluster assembly protein, putative [Ph... [more]
gi|953486832|emb|CEG48894.1|1.234e-4367.29iron-sulfur protein [Plasmopara halstedii][more]
gi|698798546|ref|XP_009832302.1|5.304e-4362.93hypothetical protein H257_08194 [Aphanomyces astac... [more]
gi|673037850|ref|XP_008872886.1|9.971e-4362.07hypothetical protein, variant [Aphanomyces invadan... [more]
gi|813164298|ref|XP_012203209.1|4.177e-4261.16hypothetical protein SPRG_08579 [Saprolegnia paras... [more]
gi|1072224804|gb|OEU09553.1|9.073e-4262.18hypothetical protein FRACYDRAFT_173634 [Fragilario... [more]
gi|1210530937|dbj|GAX10477.1|1.206e-4160.66iron-sulfur cluster assembly protein [Fistulifera ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1845rna1845Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications