EWM30517.1, cds184 (CDS) Nannochloropsis gaditana

Overview
NameEWM30517.1
Unique Namecds184
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:483423..483483 -
Alignment locationCM002455.1:483241..483262 -
Alignment locationCM002455.1:482368..482980 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30517.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g33.9805.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:483423..483483 -
CM002455.1supercontigCM002455.1:483241..483262 -
CM002455.1supercontigCM002455.1:482368..482980 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|585113181|gb|EWM30517.1| (hypothetical protein Naga_100013g33 [Nannochloropsis gaditana])

HSP 1 Score: 459.529 bits (1181), Expect = 2.108e-163
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MAARQLFLLALLPAVALSFMGHPRVSRGSVRMMSDLMDKPKISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKESI 231
            MAARQLFLLALLPAVALSFMGHPRVSRGSVRMMSDLMDKPKISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKESI
Sbjct:    1 MAARQLFLLALLPAVALSFMGHPRVSRGSVRMMSDLMDKPKISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKESI 231          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|397632841|gb|EJK70717.1| (hypothetical protein THAOC_07899 [Thalassiosira oceanica])

HSP 1 Score: 119.398 bits (298), Expect = 1.494e-29
Identity = 71/175 (40.57%), Postives = 106/175 (60.57%), Query Frame = 0
Query:   57 STALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGED-SVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKES 230
            +TA+VP+N +T+E +A ++G   G    GPVLG +     NYA+KTD +VGE    V KT++E+FNY  K++SKY++     +     + KLK +D  +   V K+E    ST  K+S+++ EYDLV    +A+G+  D    AI KA E+NE+Y + DK   A+ +AV KAK S
Sbjct:   51 TTAIVPINEETVEFTAGLLGGVVGFSLGGPVLGAIGAAAANYASKTDAEVGEVLSAVSKTSIEIFNYFSKLDSKYEVLDSAKSQLEVSLEKLKSSDSANPETVEKIESALSSTTEKISEINDEYDLVGTGMTALGVVGDLVEKAIIKAGEINEEYQLSDKAVAALGEAVEKAKAS 225          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|219109718|ref|XP_002176613.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411148|gb|EEC51076.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 119.013 bits (297), Expect = 2.411e-29
Identity = 67/175 (38.29%), Postives = 107/175 (61.14%), Query Frame = 0
Query:   57 STALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGED-SVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKES 230
            S+ALVP+  +T+E +A I+G +AG +  GPV+G +     NYA+K D DV +  + V KT ++++NY   ++ KY+I  K  +S    + KLK  +  D   +AK+E+   +TK+K+ +++ EYDLV    +A+G+  D     I KA ELNE+Y + DK   ++  AV KAKE+
Sbjct:   63 SSALVPIKEETVEFTAGILGGAAGFLVGGPVVGAITAAAANYASKMDGDVPDIVQAVSKTGIQIYNYFATLDEKYEILKKAQDSLQGTLDKLKAQETVDKEAIAKVEKALSNTKSKIEEINDEYDLVGGGLTALGVVGDLVEKTIKKAGELNEEYKLTDKAMASINSAVTKAKEA 237          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|224014104|ref|XP_002296715.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968570|gb|EED86916.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 114.775 bits (286), Expect = 6.956e-28
Identity = 72/191 (37.70%), Postives = 110/191 (57.59%), Query Frame = 0
Query:   39 KPKISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGED-SVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAK 228
            +P+ +  +S  PA    KS A+VP+N +T+E +A I+G   G    GP LG +     NYA+KTD +VGE    V KT +E++NY  K++SKY++  K      S + K+K ++  +   + K+E    +T  K+ +++ EYDLV    +A+G+  D    AI KA ELNE+YS+  K   A+  AV KAK
Sbjct:   27 RPRSTLFMSEEPAAPAIKSGAIVPINEETVEFTAGILGGVVGFALGGPALGAITAAAANYASKTDAEVGEVLSAVSKTTIEIYNYFAKLDSKYEVLDKAKAQLESALDKVKSSENANPETIEKIESALSNTNKKIREINDEYDLVGTGMTALGVVGDLVEKAIIKAGELNEEYSLSSKAMAAINDAVEKAK 217          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|298712872|emb|CBJ33389.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.071 bits (266), Expect = 2.917e-25
Identity = 67/185 (36.22%), Postives = 105/185 (56.76%), Query Frame = 0
Query:   45 AVSTPPAGGEPKSTAL-VPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAK 228
            AV+  P   E    AL V VN +  E SA ++G  AG    GPVL  VL +  NY +K +N+ G A RGV   A+E FN++  +NSKY +  K        V++LK        + K+E+T +   ++ + L  EYDL +KAK A+G+  + +++AI K +EL ++Y + DK  D++KK+++  K
Sbjct:    2 AVTDEPKEKEETKGALTVAVNTENTEFSAGVLGGLAGFFVGGPVLAAVLAVAANYGSKQENEAGVAVRGVSANAIEAFNFLTTLNSKYDVTGKAGAQLDKAVTELKSTGEAGDTIEKVEKTVKDLTSQATKLSSEYDLPAKAKQALGVAGELADTAIVKGIELEKEYKVTDKVKDSIKKSIDSTK 186          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|223999553|ref|XP_002289449.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974657|gb|EED92986.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 106.686 bits (265), Expect = 8.588e-24
Identity = 59/175 (33.71%), Postives = 102/175 (58.29%), Query Frame = 0
Query:   58 TALVPVNPQTIETSAAIVGTSAGIVFLG-PVLGIVLGLLTNYAAKTDN--DVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDS-VVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAK 228
            +A++P+N  TIE +A ++G +A +V  G PVL IV     NY +K D   +V E  + + + +LE FN+  K++SKY +  K+  S    + KLK + GE++  +AK+EE    T  ++SDL  + D    +K  +G   +   +++DKA++ N++Y + ++   AVK  + KAK
Sbjct:  153 SAIIPINEATIEFTAGVLGGTAALVLGGGPVLAIVAAAAANYVSKKDELGEVNELVQAISRASLETFNWFAKLDSKYSVLGKLQTSLDESIEKLKNSGGENAETIAKIEEAVAKTTKQISDLANDTDFFEGSKQVLGAVGEVLETSVDKAVDANKEYKLTERAAGAVKGVIEKAK 327          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|1210519426|dbj|GAX21705.1| (hypothetical protein FisN_3Hh497 [Fistulifera solaris])

HSP 1 Score: 103.605 bits (257), Expect = 1.636e-23
Identity = 56/181 (30.94%), Postives = 104/181 (57.46%), Query Frame = 0
Query:   41 KISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGED-SVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAV 220
            +++  V  PPA       ALVP+  +T+E +A ++G + G    GP+ G++     NY +K D DV +  + V KT+++VFNY+  ++ KY++  K   S  + +  LK+ +  D + + K+E+   +T  K+ +++ EYDLV    +A+G+  D     +DKA ELN++Y + +K  +++
Sbjct:   32 RMTEEVEAPPAPKADVGGALVPIKEETVEFTAGLLGGAFGFAVGGPLFGLIAAAAANYVSKMDGDVSDVVQAVSKTSIQVFNYLATLDKKYEVLKKAQGSLENALDNLKKQESVDPATIEKVEQALANTNKKIKEVNDEYDLVGGGVTALGVVGDLVEKIVDKAGELNKEYQLTEKAKESL 212          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|1210531195|dbj|GAX10296.1| (hypothetical protein FisN_3Lh497 [Fistulifera solaris])

HSP 1 Score: 102.449 bits (254), Expect = 4.657e-23
Identity = 56/181 (30.94%), Postives = 103/181 (56.91%), Query Frame = 0
Query:   41 KISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGED-SVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAV 220
            +++  V  PPA       ALVP+  +T+E +A ++G + G    GP+ G++     NY +K D DV +  + V KT+++VFNY+  ++ KY++  K   S  + +  LK+ +  D + + K+E    +T  K+ +++ EYDLV    +A+G+  D     +DKA ELN++Y + +K  +++
Sbjct:   32 RMTEEVEAPPAPKADVGGALVPIKEETVEFTAGLLGGAFGFAVGGPLFGVIAAAAANYVSKMDGDVSDVVQAVSKTSIQVFNYLATLDKKYEVLKKAQGSLENALDNLKKQESVDPATIEKVETALANTNKKIKEVNDEYDLVGGGITALGVVGDLVEKIVDKAGELNKEYQLTEKAKESL 212          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|1072233869|gb|OEU18599.1| (hypothetical protein FRACYDRAFT_268367 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 100.138 bits (248), Expect = 3.287e-22
Identity = 67/188 (35.64%), Postives = 108/188 (57.45%), Query Frame = 0
Query:   42 ISPAVSTPPAGGEPKSTA---LVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGED-SVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVN 225
            + PAV+T     EP+  A   LV +  +T+E +A ++G  AG    GP+LG V     NY +K++N+ GE    V K+ALE++NY+  ++ KY++    ++S  S + KLK  D  D + + K+E    ST+ K+S+++ EYDLV    +A+G+  D     + K  ELNE+Y + DK   A+  AV+
Sbjct:   30 VRPAVTTTFMSEEPEVAAGGKLVAIKEETVEFTAGLIGGVAGFAVGGPLLGAVGAAAANYVSKSENEAGEIVGAVSKSALEIYNYLATLDDKYEVLGAAASSLESALIKLKSQDKIDPAAIEKVESALASTQAKISEVNDEYDLVGSGLTALGVVGDLVEKTVKKVGELNEEYQLTDKAKVALSSAVD 217          
BLAST of EWM30517.1 vs. NCBI_GenBank
Match: gi|397576494|gb|EJK50289.1| (hypothetical protein THAOC_30761 [Thalassiosira oceanica])

HSP 1 Score: 93.5893 bits (231), Expect = 3.876e-19
Identity = 56/194 (28.87%), Postives = 113/194 (58.25%), Query Frame = 0
Query:   40 PKISPAVSTPPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVF-LGPVLGIVLGLLTNYAAKTDN--DVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDS-VVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKE 229
            PK + + +   + G     A++P+N + +E ++ ++G  A I     P+  +V+    NY ++ ++  ++ E    +  ++L+  N+  K++ KY +  K+S +    VS LK ++G+++  V K+E+T +ST ++LS L +E DLV  +K A+G   D   ++IDKA++ N++Y + ++  +A KKA+ K K+
Sbjct:  120 PKAATSFNVDASAG-----AIIPLNKENVEFTSGVLGGVAAIALGANPLFAVVVAAAANYISRKEDLGEISEIVNSISTSSLQTLNWFGKLDEKYTVLDKLSETLDQQVSSLKSSEGKNAETVGKIEQTIKSTSSQLSQLAEELDLVEGSKQALGAFGDVLETSIDKAVDANKEYKLTERAGEAAKKAIEKVKD 308          
The following BLAST results are available for this feature:
BLAST of EWM30517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113181|gb|EWM30517.1|2.108e-163100.00hypothetical protein Naga_100013g33 [Nannochlorops... [more]
gi|397632841|gb|EJK70717.1|1.494e-2940.57hypothetical protein THAOC_07899 [Thalassiosira oc... [more]
gi|219109718|ref|XP_002176613.1|2.411e-2938.29predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|224014104|ref|XP_002296715.1|6.956e-2837.70predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298712872|emb|CBJ33389.1|2.917e-2536.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|223999553|ref|XP_002289449.1|8.588e-2433.71predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210519426|dbj|GAX21705.1|1.636e-2330.94hypothetical protein FisN_3Hh497 [Fistulifera sola... [more]
gi|1210531195|dbj|GAX10296.1|4.657e-2330.94hypothetical protein FisN_3Lh497 [Fistulifera sola... [more]
gi|1072233869|gb|OEU18599.1|3.287e-2235.64hypothetical protein FRACYDRAFT_268367 [Fragilario... [more]
gi|397576494|gb|EJK50289.1|3.876e-1928.87hypothetical protein THAOC_30761 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna184rna184Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications