EWM28852.1, cds1820 (CDS) Nannochloropsis gaditana

Overview
NameEWM28852.1
Unique Namecds1820
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:241380..241832 -
Alignment locationCM002458.1:240717..241142 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28852.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g16.1506.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:241380..241832 -
CM002458.1supercontigCM002458.1:240717..241142 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR009724DUF1301_TMEM70
Homology
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|585111279|gb|EWM28852.1| (hypothetical protein Naga_100133g16 [Nannochloropsis gaditana])

HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MRFLAPRYSKTGIMLSTAKFSLLPQRRTSSIVLDLNIRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN 292
            MRFLAPRYSKTGIMLSTAKFSLLPQRRTSSIVLDLNIRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN
Sbjct:    1 MRFLAPRYSKTGIMLSTAKFSLLPQRRTSSIVLDLNIRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN 292          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|553184764|ref|XP_005854143.1| (hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526] >gi|422294920|gb|EKU22220.1| hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.825 bits (634), Expect = 4.293e-79
Identity = 126/144 (87.50%), Postives = 126/144 (87.50%), Query Frame = 0
Query:   76 SLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPM------------------AANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSG 201
            SLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPM                  AANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSG
Sbjct:    1 SLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMKKGMHECKVCMGWISPHTAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSG 144          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|298705480|emb|CBJ28755.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7373 bits (221), Expect = 1.803e-18
Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 0
Query:  145 GSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGD---KSDRAVRRNTTPDM---HFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSE 284
            G ESVP+A  VA+    L+ T   T+LL+    PY+F  R+A     +  +   + GD   K      R   P +    F  + ++    R TT F++ +V+P+PN++RPFVSF A    YF+ G    DK LL +LLGR LK  E
Sbjct:    3 GKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVF--RMAEIY--EGGVAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHE 144          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|1214713815|gb|OWZ24695.1| (hypothetical protein PHMEG_000218 [Phytophthora megakarya])

HSP 1 Score: 89.3521 bits (220), Expect = 1.852e-17
Identity = 62/220 (28.18%), Postives = 96/220 (43.64%), Query Frame = 0
Query:   72 LQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVL--------------IYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLG 277
            LQ+ S+  +S    R++   G  + R FS+T  D KA                +Y    +  +R +K VS+T+C +     P    L  +     +  A+ G ++L   G T L H   KPY+  + + P    + D                    D   + +T+   ++   TSF LSDV P   +  P VSF ARDR YF+H E F D++LL+ L+G
Sbjct:   40 LQHVSIDFNSR---RNVGFHGSFTVRHFSATQSDAKAKEEEAQQHSTDVADDPVYQAPMSRAVRLMKAVSVTSCTLTSIGMPVLCVLSEQDT---SAWAMCGTIMLFGLGTTSLFHYLFKPYVMRMWLTPATEEEKD--------------------DQTVTVETVTLFAQLEKTSFQLSDVSPPTQAMHPMVSFQARDRHYFIHPEAFDDQNLLNKLVG 233          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|224003005|ref|XP_002291174.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972950|gb|EED91281.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 87.4261 bits (215), Expect = 2.795e-16
Identity = 64/199 (32.16%), Postives = 95/199 (47.74%), Query Frame = 0
Query:   94 QSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFF-LTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPF-VTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTI--DFLSRRITTSFN-LSDVKPLP-NSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELE 286
              P  FS    D +  L+Y G  A +   LKRVSLT+ +IGL   P   L  G+ +VP    +A+     +   G T LL     PY+  L V P  VT+++D    D GD +  +   +   D    A  +  D L+RR+ T FN  +D+ P P N++RPF +F  +    +VH E   D  L   L+G   ++ + E
Sbjct:   93 NQPEKFSVEYSDDEPTLVYEGPFASLTLKLKRVSLTSAVIGLVGLPALSLFYGAGAVPAIGQIAVIATAGITAVGSTALLGYCFSPYVHTLEVLPEKVTSESDGN-EDEGDGNATSNNTDEGVDTQRLARIVTRDILARRVETVFNPATDISPPPSNNSRPFCNFMVKGLPMYVHPELVHDYKLRVQLVGEEPQQEDAE 290          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|813164288|ref|XP_012203204.1| (hypothetical protein SPRG_08574 [Saprolegnia parasitica CBS 223.65] >gi|641532169|gb|KDO26212.1| hypothetical protein SPRG_08574 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 84.7297 bits (208), Expect = 3.204e-16
Identity = 55/197 (27.92%), Postives = 89/197 (45.18%), Query Frame = 0
Query:   88 LPGRGYQSP-RTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKS 283
            LP     +P R FS+   + K  L+Y       + T+K VS+T+C++     P     G+ +  +    A+ G V+    G T L H   KPY+  + V                D+S   V          + +T++ L+R+  T F L+DV     S  P V+F A+D+ YF+H E F D+ L   LLG+ ++ +
Sbjct:   15 LPKAALHAPARFFSAAPEEKKFELVYEAPLIKPVTTMKAVSVTSCVLTSVGMPLGCYYGNVTASLVGQWAMCGTVMFFGIGTTSLFHYLFKPYVLRMWV----------------DRSSETV----------AVETLNLLARKKRTEFVLADVASPDVSNHPMVNFKAKDQHYFIHPEVFQDRALAERLLGKKIEDA 185          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|669149390|ref|XP_008610257.1| (hypothetical protein SDRG_06267 [Saprolegnia diclina VS20] >gi|530737909|gb|EQC36151.1| hypothetical protein SDRG_06267 [Saprolegnia diclina VS20])

HSP 1 Score: 83.9593 bits (206), Expect = 6.512e-16
Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 0
Query:   88 LPGRGYQSP-RTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELE 286
            LP     +P R FS+   + K  L+Y       + T+K VS+T+C++     P     G+ +  +    A+ G V+    G T L H   KPY+  + V                D+S   V          + +T++ L+R+  T F LSDV     S  P ++F A+D+ YF+H E F D+ L   LLG+ ++ + ++
Sbjct:   15 LPKAALHAPTRFFSAAPEEKKFELVYEAPLIKPVTTMKAVSITSCVLTSVGMPAGCYYGNVTASLVGQWAMCGTVMFFGIGTTSLFHFLFKPYVLRMWV----------------DRSSETV----------AVETLNLLARKKRTEFLLSDVASPDVSNHPMINFKAKDQHYFIHPEVFADRALAERLLGKKIEDAPVD 188          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|698807488|ref|XP_009836773.1| (hypothetical protein H257_11506 [Aphanomyces astaci] >gi|574108329|gb|ETV73837.1| hypothetical protein H257_11506 [Aphanomyces astaci])

HSP 1 Score: 82.8037 bits (203), Expect = 2.704e-15
Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 0
Query:   93 YQSPRTFSSTAGDGK---AVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETF--PDKHLLHSLLGRPLKK 282
            +Q    FS+ A +GK     LIY    A  +R +K VS+T+C +     P     GS    + A  A+   ++    G T L H   KPY+  L +      D D E+                     + +T++ L+ + T++F L+D      S  P ++F A+D+ YFVH E F   D+ ++  LLGRPL++
Sbjct:   27 HQHGHFFSTEASNGKPEAKELIYEAPLARPVRMMKAVSVTSCTLTSIGMPVTCIYGSVLSSVVAQWAMCSTIMFFGMGTTALFHVLFKPYVLRLWI------DRDSEL--------------------VTVETLNLLAAKTTSAFQLTDATFPDKSMHPMINFKAKDKHYFVHPEAFDEADRAVVEKLLGRPLEE 195          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|675201463|ref|XP_008909616.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566017576|gb|ETI40487.1| hypothetical protein F443_14112 [Phytophthora parasitica P1569] >gi|566017577|gb|ETI40488.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567954958|gb|ETK80591.1| hypothetical protein L915_13755 [Phytophthora parasitica] >gi|567954959|gb|ETK80592.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567983627|gb|ETL34014.1| hypothetical protein L916_13652 [Phytophthora parasitica] >gi|567983628|gb|ETL34015.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568013111|gb|ETL87288.1| hypothetical protein L917_13460 [Phytophthora parasitica] >gi|568013112|gb|ETL87289.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568043219|gb|ETM40514.1| hypothetical protein L914_13545 [Phytophthora parasitica] >gi|568043220|gb|ETM40515.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568090311|gb|ETN05146.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570321272|gb|ETO69220.1| hypothetical protein F444_14142 [Phytophthora parasitica P1976] >gi|570321273|gb|ETO69221.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570945006|gb|ETP10263.1| hypothetical protein F441_14040 [Phytophthora parasitica CJ01A1] >gi|570945007|gb|ETP10264.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570976635|gb|ETP38403.1| hypothetical protein F442_13957 [Phytophthora parasitica P10297] >gi|570976636|gb|ETP38404.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 82.0333 bits (201), Expect = 6.732e-15
Identity = 47/172 (27.33%), Postives = 79/172 (45.93%), Query Frame = 0
Query:  111 IYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKK 282
            +Y    +  +R +K VS+T+C +     P    L  +        A+ G ++L   G T L H   KPY+  +    ++T  +    +D+ D            D   + +T+   ++    SF LS+V P   +  P +SF AR R YF+H E F D++LL+ L+G   +K
Sbjct:   80 VYQAPMSRAVRLMKAVSVTSCTLTSIGMPVLCVLSEQDTSTVGKWAMCGTIMLFGFGSTSLFHYLFKPYVMRM----WLTDASQAPTADTND------------DATVTVETVTLFAQLEQHSFRLSEVSPPTQAMHPMISFQARGRHYFIHPEAFDDQNLLNKLIGSGKRK 235          
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|301117498|ref|XP_002906477.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|301125666|ref|XP_002909793.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262104296|gb|EEY62348.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107826|gb|EEY65878.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 80.1073 bits (196), Expect = 6.874e-15
Identity = 46/163 (28.22%), Postives = 74/163 (45.40%), Query Frame = 0
Query:  120 IRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKK 282
            +R +K VS+T+C +     P    L  +        A+ G ++L   G T L H   KPY+  + +A      N   ++D+ D            D   + +T    ++    SF LS V P   +  P +SF AR R YF+H E F +++LL+ L+G   +K
Sbjct:    5 VRLMKAVSVTSCTLTSIGMPVLCVLSEQDASSVGKWAMCGTIMLFGFGSTSLFHYLFKPYVMRMWLANTSAGPNQASVADTKD------------DPTVTVETTTLFAQLEQHSFRLSSVTPPTQAMHPMISFQARGRHYFIHPEAFDNQNLLNKLMGSGKRK 155          
The following BLAST results are available for this feature:
BLAST of EWM28852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111279|gb|EWM28852.1|0.000e+0100.00hypothetical protein Naga_100133g16 [Nannochlorops... [more]
gi|553184764|ref|XP_005854143.1|4.293e-7987.50hypothetical protein NGA_0204200, partial [Nannoch... [more]
gi|298705480|emb|CBJ28755.1|1.803e-1836.30conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214713815|gb|OWZ24695.1|1.852e-1728.18hypothetical protein PHMEG_000218 [Phytophthora me... [more]
gi|224003005|ref|XP_002291174.1|2.795e-1632.16predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|813164288|ref|XP_012203204.1|3.204e-1627.92hypothetical protein SPRG_08574 [Saprolegnia paras... [more]
gi|669149390|ref|XP_008610257.1|6.512e-1627.50hypothetical protein SDRG_06267 [Saprolegnia dicli... [more]
gi|698807488|ref|XP_009836773.1|2.704e-1528.72hypothetical protein H257_11506 [Aphanomyces astac... [more]
gi|675201463|ref|XP_008909616.1|6.732e-1527.33hypothetical protein, variant [Phytophthora parasi... [more]
gi|301117498|ref|XP_002906477.1|6.874e-1528.22conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1824rna1824Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications