EWM28852.1, cds1820 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|585111279|gb|EWM28852.1| (hypothetical protein Naga_100133g16 [Nannochloropsis gaditana]) HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query: 1 MRFLAPRYSKTGIMLSTAKFSLLPQRRTSSIVLDLNIRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN 292
MRFLAPRYSKTGIMLSTAKFSLLPQRRTSSIVLDLNIRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN
Sbjct: 1 MRFLAPRYSKTGIMLSTAKFSLLPQRRTSSIVLDLNIRSKRMQVTLRNANYLLHSKKSGLQESCTARLSCHLQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELEGSEQPN 292
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|553184764|ref|XP_005854143.1| (hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526] >gi|422294920|gb|EKU22220.1| hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 248.825 bits (634), Expect = 4.293e-79 Identity = 126/144 (87.50%), Postives = 126/144 (87.50%), Query Frame = 0
Query: 76 SLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPM------------------AANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSG 201
SLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPM AANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSG
Sbjct: 1 SLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMKKGMHECKVCMGWISPHTAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSG 144
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|298705480|emb|CBJ28755.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 89.7373 bits (221), Expect = 1.803e-18 Identity = 53/146 (36.30%), Postives = 76/146 (52.05%), Query Frame = 0
Query: 145 GSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGD---KSDRAVRRNTTPDM---HFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSE 284
G ESVP+A VA+ L+ T T+LL+ PY+F R+A + + + GD K R P + F + ++ R TT F++ +V+P+PN++RPFVSF A YF+ G DK LL +LLGR LK E
Sbjct: 3 GKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVF--RMAEIY--EGGVAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHE 144
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|1214713815|gb|OWZ24695.1| (hypothetical protein PHMEG_000218 [Phytophthora megakarya]) HSP 1 Score: 89.3521 bits (220), Expect = 1.852e-17 Identity = 62/220 (28.18%), Postives = 96/220 (43.64%), Query Frame = 0
Query: 72 LQYASLPTSSACRLRSLPGRGYQSPRTFSSTAGDGKAVL--------------IYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLG 277
LQ+ S+ +S R++ G + R FS+T D KA +Y + +R +K VS+T+C + P L + + A+ G ++L G T L H KPY+ + + P + D D + +T+ ++ TSF LSDV P + P VSF ARDR YF+H E F D++LL+ L+G
Sbjct: 40 LQHVSIDFNSR---RNVGFHGSFTVRHFSATQSDAKAKEEEAQQHSTDVADDPVYQAPMSRAVRLMKAVSVTSCTLTSIGMPVLCVLSEQDT---SAWAMCGTIMLFGLGTTSLFHYLFKPYVMRMWLTPATEEEKD--------------------DQTVTVETVTLFAQLEKTSFQLSDVSPPTQAMHPMVSFQARDRHYFIHPEAFDDQNLLNKLVG 233
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|224003005|ref|XP_002291174.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972950|gb|EED91281.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 87.4261 bits (215), Expect = 2.795e-16 Identity = 64/199 (32.16%), Postives = 95/199 (47.74%), Query Frame = 0
Query: 94 QSPRTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFF-LTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPF-VTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTI--DFLSRRITTSFN-LSDVKPLP-NSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELE 286
P FS D + L+Y G A + LKRVSLT+ +IGL P L G+ +VP +A+ + G T LL PY+ L V P VT+++D D GD + + + D A + D L+RR+ T FN +D+ P P N++RPF +F + +VH E D L L+G ++ + E
Sbjct: 93 NQPEKFSVEYSDDEPTLVYEGPFASLTLKLKRVSLTSAVIGLVGLPALSLFYGAGAVPAIGQIAVIATAGITAVGSTALLGYCFSPYVHTLEVLPEKVTSESDGN-EDEGDGNATSNNTDEGVDTQRLARIVTRDILARRVETVFNPATDISPPPSNNSRPFCNFMVKGLPMYVHPELVHDYKLRVQLVGEEPQQEDAE 290
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|813164288|ref|XP_012203204.1| (hypothetical protein SPRG_08574 [Saprolegnia parasitica CBS 223.65] >gi|641532169|gb|KDO26212.1| hypothetical protein SPRG_08574 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 84.7297 bits (208), Expect = 3.204e-16 Identity = 55/197 (27.92%), Postives = 89/197 (45.18%), Query Frame = 0
Query: 88 LPGRGYQSP-RTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKS 283
LP +P R FS+ + K L+Y + T+K VS+T+C++ P G+ + + A+ G V+ G T L H KPY+ + V D+S V + +T++ L+R+ T F L+DV S P V+F A+D+ YF+H E F D+ L LLG+ ++ +
Sbjct: 15 LPKAALHAPARFFSAAPEEKKFELVYEAPLIKPVTTMKAVSVTSCVLTSVGMPLGCYYGNVTASLVGQWAMCGTVMFFGIGTTSLFHYLFKPYVLRMWV----------------DRSSETV----------AVETLNLLARKKRTEFVLADVASPDVSNHPMVNFKAKDQHYFIHPEVFQDRALAERLLGKKIEDA 185
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|669149390|ref|XP_008610257.1| (hypothetical protein SDRG_06267 [Saprolegnia diclina VS20] >gi|530737909|gb|EQC36151.1| hypothetical protein SDRG_06267 [Saprolegnia diclina VS20]) HSP 1 Score: 83.9593 bits (206), Expect = 6.512e-16 Identity = 55/200 (27.50%), Postives = 91/200 (45.50%), Query Frame = 0
Query: 88 LPGRGYQSP-RTFSSTAGDGKAVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSELE 286
LP +P R FS+ + K L+Y + T+K VS+T+C++ P G+ + + A+ G V+ G T L H KPY+ + V D+S V + +T++ L+R+ T F LSDV S P ++F A+D+ YF+H E F D+ L LLG+ ++ + ++
Sbjct: 15 LPKAALHAPTRFFSAAPEEKKFELVYEAPLIKPVTTMKAVSITSCVLTSVGMPAGCYYGNVTASLVGQWAMCGTVMFFGIGTTSLFHFLFKPYVLRMWV----------------DRSSETV----------AVETLNLLARKKRTEFLLSDVASPDVSNHPMINFKAKDQHYFIHPEVFADRALAERLLGKKIEDAPVD 188
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|698807488|ref|XP_009836773.1| (hypothetical protein H257_11506 [Aphanomyces astaci] >gi|574108329|gb|ETV73837.1| hypothetical protein H257_11506 [Aphanomyces astaci]) HSP 1 Score: 82.8037 bits (203), Expect = 2.704e-15 Identity = 56/195 (28.72%), Postives = 89/195 (45.64%), Query Frame = 0
Query: 93 YQSPRTFSSTAGDGK---AVLIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETF--PDKHLLHSLLGRPLKK 282
+Q FS+ A +GK LIY A +R +K VS+T+C + P GS + A A+ ++ G T L H KPY+ L + D D E+ + +T++ L+ + T++F L+D S P ++F A+D+ YFVH E F D+ ++ LLGRPL++
Sbjct: 27 HQHGHFFSTEASNGKPEAKELIYEAPLARPVRMMKAVSVTSCTLTSIGMPVTCIYGSVLSSVVAQWAMCSTIMFFGMGTTALFHVLFKPYVLRLWI------DRDSEL--------------------VTVETLNLLAAKTTSAFQLTDATFPDKSMHPMINFKAKDKHYFVHPEAFDEADRAVVEKLLGRPLEE 195
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|675201463|ref|XP_008909616.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566017576|gb|ETI40487.1| hypothetical protein F443_14112 [Phytophthora parasitica P1569] >gi|566017577|gb|ETI40488.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567954958|gb|ETK80591.1| hypothetical protein L915_13755 [Phytophthora parasitica] >gi|567954959|gb|ETK80592.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567983627|gb|ETL34014.1| hypothetical protein L916_13652 [Phytophthora parasitica] >gi|567983628|gb|ETL34015.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568013111|gb|ETL87288.1| hypothetical protein L917_13460 [Phytophthora parasitica] >gi|568013112|gb|ETL87289.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568043219|gb|ETM40514.1| hypothetical protein L914_13545 [Phytophthora parasitica] >gi|568043220|gb|ETM40515.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568090311|gb|ETN05146.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570321272|gb|ETO69220.1| hypothetical protein F444_14142 [Phytophthora parasitica P1976] >gi|570321273|gb|ETO69221.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570945006|gb|ETP10263.1| hypothetical protein F441_14040 [Phytophthora parasitica CJ01A1] >gi|570945007|gb|ETP10264.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570976635|gb|ETP38403.1| hypothetical protein F442_13957 [Phytophthora parasitica P10297] >gi|570976636|gb|ETP38404.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 82.0333 bits (201), Expect = 6.732e-15 Identity = 47/172 (27.33%), Postives = 79/172 (45.93%), Query Frame = 0
Query: 111 IYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKK 282
+Y + +R +K VS+T+C + P L + A+ G ++L G T L H KPY+ + ++T + +D+ D D + +T+ ++ SF LS+V P + P +SF AR R YF+H E F D++LL+ L+G +K
Sbjct: 80 VYQAPMSRAVRLMKAVSVTSCTLTSIGMPVLCVLSEQDTSTVGKWAMCGTIMLFGFGSTSLFHYLFKPYVMRM----WLTDASQAPTADTND------------DATVTVETVTLFAQLEQHSFRLSEVSPPTQAMHPMISFQARGRHYFIHPEAFDDQNLLNKLIGSGKRK 235
BLAST of EWM28852.1 vs. NCBI_GenBank
Match: gi|301117498|ref|XP_002906477.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|301125666|ref|XP_002909793.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262104296|gb|EEY62348.1| conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107826|gb|EEY65878.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 80.1073 bits (196), Expect = 6.874e-15 Identity = 46/163 (28.22%), Postives = 74/163 (45.40%), Query Frame = 0
Query: 120 IRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKK 282
+R +K VS+T+C + P L + A+ G ++L G T L H KPY+ + +A N ++D+ D D + +T ++ SF LS V P + P +SF AR R YF+H E F +++LL+ L+G +K
Sbjct: 5 VRLMKAVSVTSCTLTSIGMPVLCVLSEQDASSVGKWAMCGTIMLFGFGSTSLFHYLFKPYVMRMWLANTSAGPNQASVADTKD------------DPTVTVETTTLFAQLEQHSFRLSSVTPPTQAMHPMISFQARGRHYFIHPEAFDNQNLLNKLMGSGKRK 155 The following BLAST results are available for this feature:
BLAST of EWM28852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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