EWM30462.1, cds182 (CDS) Nannochloropsis gaditana

Overview
NameEWM30462.1
Unique Namecds182
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:479100..479118 -
Alignment locationCM002455.1:478948..479006 -
Alignment locationCM002455.1:478662..478820 -
Alignment locationCM002455.1:478389..478512 -
Alignment locationCM002455.1:477788..478254 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30462.1
ProductHepatocellular carcinoma-associated antigen 59
Orig transcript idgnl|cribi|Naga_100013g36.9750.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:479100..479118 -
CM002455.1supercontigCM002455.1:478948..479006 -
CM002455.1supercontigCM002455.1:478662..478820 -
CM002455.1supercontigCM002455.1:478389..478512 -
CM002455.1supercontigCM002455.1:477788..478254 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR010756Hep_59
Homology
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|585113126|gb|EWM30462.1| (Hepatocellular carcinoma-associated antigen 59 [Nannochloropsis gaditana])

HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    1 MRRRRAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY 275
            MRRRRAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY
Sbjct:    1 MRRRRAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY 275          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|298713725|emb|CBJ48916.1| (hypothetical protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 74.7146 bits (182), Expect = 1.578e-11
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = 0
Query:   76 SIGEMMESSFTGMKYVTKDDTN------VHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSK--VSRREQLLAITEEIHARAR------GPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQG-EKKGEIIGSLTHNYHHHRKEYAINMRA 238
            +I  MMES+F                   HE++MEQY+++++G   EE  +     +    S   +S  ++L  I E+   +            ++  + +G VG GA IA++TG+AE+ALP+EFKL+N+E T  AR   E     R+        + GSLT NY HH+KE+A+ +RA
Sbjct:  188 NISTMMESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGG--EEGADAKEEEDGGGGSNNMLSEEDRLYTIPEDFKKKVEEAKVEFDTGANRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTLAARDKMESVRAARRNAPGASSSLSGSLTANYSHHQKEWALQIRA 363          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|1111088878|ref|XP_019232060.1| (PREDICTED: uncharacterized protein C9orf78 [Nicotiana attenuata] >gi|1102150369|gb|OIT06645.1| hypothetical protein A4A49_17087 [Nicotiana attenuata])

HSP 1 Score: 65.855 bits (159), Expect = 7.578e-9
Identity = 66/226 (29.20%), Postives = 109/226 (48.23%), Query Frame = 0
Query:   24 LVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKES----------KAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRRE-QLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMR 237
            L +++  QKQR+ +LGI A S+   + A  GG+   S          K   + E+DE         +++ +F     V ++D N     M +YIE+ L   + +  +V    E    ++V R E +L  I E +  + R               E +   ++TGIAE+ LP+E+KL+NIE TE A +LLQE++L+ + + E    I  S + +Y    K+YA  +R
Sbjct:   37 LEEVKFLQKQRERKLGIPAVSSSTAQVAAGGGASNNSAGGLVRKVNDKGEGDVEKDEL--------VLQDTFAQETAVLEEDPN-----MVRYIEQELAKKRGKNVDVADQVE----NEVKRAEDELYKIPEHLKVKRRN-------------SEESSTQWTTGIAEIQLPIEYKLKNIEETEAAKKLLQEKRLMGKARTE--SSIPSSYSADYFQRGKDYAEKLR 230          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|727603193|ref|XP_010474646.1| (PREDICTED: uncharacterized protein C9orf78 homolog [Camelina sativa])

HSP 1 Score: 65.4698 bits (158), Expect = 8.905e-9
Identity = 78/287 (27.18%), Postives = 129/287 (44.95%), Query Frame = 0
Query:    5 RAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRRE-QLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRARE----------------GKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKR 273
            +A N D+EE     ++  K +Q     KQR+ +LGI A S+   + +  G  +   K  AE E++E         +++ +F     V  +D N     M +YIE+ L   + +  +     E    +++ R E +L  I + +  + R               E +   ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E    I  S + +Y    K+YA  +R RE                 KP       + +  + R   TD  +  +F+KR
Sbjct:   22 KAANLDEEEKRRLALEEVKFLQ-----KQRERKLGIPALSSTAAQYSSIGKVKPVEKPEAEGEKEEL--------VLQDTFAQETAVLIEDPN-----MVKYIEQELAKKRGKNIDDAEEGE----NELKRVEDELYKIPDHLKVKKRS-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRPKSE--FSIPSSYSADYFQRGKDYAEKLR-REHPELYKDRGAQADGEGAKPSTTISNNNADSGKSRQAATDQIMLERFRKR 270          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|1137190914|gb|OMO64154.1| (Hepatocellular carcinoma-associated antigen 59 [Corchorus capsularis] >gi|1137214743|gb|OMO82325.1| Hepatocellular carcinoma-associated antigen 59 [Corchorus olitorius])

HSP 1 Score: 63.929 bits (154), Expect = 2.865e-8
Identity = 67/233 (28.76%), Postives = 112/233 (48.07%), Query Frame = 0
Query:    6 AENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMR 237
            A  SDDEE+    ++  K +Q     KQR+ +LGI A +T +T   G   ++   K  A+ E++E         +++ +F     V  +D N     M +Y+E+ L   +    +    +E+      S  ++L  I E +  + R               E +   ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E    I  S + +Y    ++YA  +R
Sbjct:   21 AAKSDDEEDRRLALEEVKFLQ-----KQRERKLGIPAITTAQT---GGIVAKVTEKGEADGEKEEL--------VLQDTFAQETAVMVEDPN-----MVKYVEQELAKKRGRNVDAKNENES---DLTSAEDELYKIPEHLKVKKRN-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRAKSE--VSIPSSYSADYFQRGRDYAEKLR 214          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|729414258|ref|XP_010556664.1| (PREDICTED: uncharacterized protein C9orf78 homolog [Tarenaya hassleriana])

HSP 1 Score: 63.5438 bits (153), Expect = 3.451e-8
Identity = 85/295 (28.81%), Postives = 135/295 (45.76%), Query Frame = 0
Query:    3 RRRAENSDDEENDNPGIKIKK-------LVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREG----KPKGIFRREDG-EGPRGRDTM-----------TDDQVYAKFKKR 273
            R+R    D+E++ + GI   +       L +++  QKQR+ +LGI A   L T +   G  +   K+  + E++E         +++ +F     V  +D N     M +YIE+ L   + +  +    S+ V        ++L  I E +  + R               E +   ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E    I  S + +Y    K+YA  +R RE     K      REDG EG R  DT            TD  +  +F+KR
Sbjct:    8 RKRTFQEDEEDDPSKGIASDEEEQRRLALEEVKFLQKQRERKLGIPA---LPTAQNSVGKVKTTEKSEGDGEKEEL--------VLQDTFAQETAVLVEDPN-----MVKYIEQELAKKRGKNLDT---SDQVENELKRVEDELYRIPEHLKVKKRS-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRPKSE--FSIPSSYSADYFQRGKDYAEKLR-REHPELYKDNNRGSREDGREGQRPSDTTNGEAGKSRQAATDQFMLERFRKR 267          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|567156431|ref|XP_006418356.1| (hypothetical protein EUTSA_v10008452mg [Eutrema salsugineum] >gi|557096127|gb|ESQ36709.1| hypothetical protein EUTSA_v10008452mg [Eutrema salsugineum])

HSP 1 Score: 63.5438 bits (153), Expect = 4.389e-8
Identity = 78/284 (27.46%), Postives = 127/284 (44.72%), Query Frame = 0
Query:    5 RAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAR--------------EGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKR 273
            +A NSD+EE     ++  K +Q     KQR+ +LGI A ST +      G  +   K  AE E++E         +++ +F     V  +D N+  + +EQ + ++ G   ++A EV    + V        ++L  I + +  + R               E +   ++TGIAEV LP+E+KL+NIE TE A +LLQE++L  R + E    I  S + +Y    ++YA  +R                EG    I      E  + R   TD  +  +F+KR
Sbjct:   22 KAANSDEEEKRRLALEEVKFLQ-----KQRERKLGIPALSTAQY---SIGKVKAVEKPEAEGEKEEL--------VLQDTFAQETAVLIEDPNMV-KYIEQELAKKRGKNLDDAEEVENELKRV-------EDELYKIPDHLKVKKRS-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLTGRPKSE--FNIPSSYSADYFQRGRDYAEKLRREHPELYKDKGPQADGEGAKPSISNNNGAESGKSRQAATDQIMLERFRKR 266          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|971511183|dbj|GAQ87028.1| (hypothetical protein KFL_003260110 [Klebsormidium nitens])

HSP 1 Score: 62.003 bits (149), Expect = 8.965e-8
Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 0
Query:   97 NVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKK---GEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKR 273
             V +  M++YIEE L   +           AV  ++ +  E  L +T E H R R     K  D + G       +++TGI EV LPV++KL+NIE TE A+    +QL  + +G+K      I  + + +YH   KE+A N   R G P+G  +  +  G +G    TDD V  +F+KR
Sbjct:   88 TVEDPAMQRYIEEELAKRR---------GTAVQKAEQATNENELFMTPE-HLRVR-----KRGDVDLGS------SWTTGIVEVQLPVDYKLKNIEETEAAK----KQLAEQSRGDKSRLGSSIPANYSTDYHQRGKEFANN---RRGPPQG--KAHNASGEKGL-AATDDMVLERFRKR 236          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|356498525|ref|XP_003518101.1| (PREDICTED: uncharacterized protein C9orf78 homolog isoform X2 [Glycine max] >gi|947120926|gb|KRH69132.1| hypothetical protein GLYMA_02G006400 [Glycine max])

HSP 1 Score: 62.003 bits (149), Expect = 1.294e-7
Identity = 71/244 (29.10%), Postives = 117/244 (47.95%), Query Frame = 0
Query:   24 LVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRRE-QLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKP--KGIFRREDGEGPRGRDTMTD 263
            L +I+  QKQR+ + GI A  +L+ +    GG    +KAA + + D  E+   +   ++ +F     V  +D N     M +YIE  L   +    +     E    +++ R E +L  I E +  + R               E +   ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + +    I  S + +Y    ++YA  +R RE     K    ++D  G +  D+ TD
Sbjct:   44 LEEIKLLQKQRERKSGIPANPSLQVQSGTGGGL--AAKAAEKNDGDGGEKDELV---LQDTFAQETAVMDEDPN-----MVKYIEHELAKKRGRKIDAADQVE----NELKRAEDELYKIPEHLKVKRRN-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRTKSD--FSIPSSYSADYFQRGRDYAEKLR-REHPELYKDRSHQDDSSGSKQNDSSTD 257          
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|1063461882|ref|XP_017979771.1| (PREDICTED: uncharacterized protein C9orf78 [Theobroma cacao])

HSP 1 Score: 61.6178 bits (148), Expect = 1.457e-7
Identity = 77/270 (28.52%), Postives = 125/270 (46.30%), Query Frame = 0
Query:    6 AENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLG-------NVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREG----KPKGIFRREDGEGPRGRDTMTD 263
            A  SDDEE+    ++  K +Q     KQR+ + GI A  T++T   G   ++   K  A+ E++E         +++ +F     V  +D N     M +Y+E+ L        + K E    +  +E          ++L  I E +  + R               E +   ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E    I  S + +Y    ++YA  +R RE     K +G   +++  G R  DT TD
Sbjct:   21 APKSDDEEDRRLALEEVKFLQ-----KQRERKSGIPAIPTVQT---GGVVAKVTEKGEADGEKEEL--------VLQDTFAQETAVMVEDPN-----MVKYVEQELAKKRGRNMDTKNEVENDLTRAE----------DELYKIPEHLKVKRRN-------------SEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKLLQEKRLMGRAKSE--VSIPSSFSADYFQRGRDYAEKLR-REHPELYKDRG--SQDESSGSRPTDTSTD 241          
The following BLAST results are available for this feature:
BLAST of EWM30462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113126|gb|EWM30462.1|0.000e+0100.00Hepatocellular carcinoma-associated antigen 59 [Na... [more]
gi|298713725|emb|CBJ48916.1|1.578e-1132.58hypothetical protein (Partial), partial [Ectocarpu... [more]
gi|1111088878|ref|XP_019232060.1|7.578e-929.20PREDICTED: uncharacterized protein C9orf78 [Nicoti... [more]
gi|727603193|ref|XP_010474646.1|8.905e-927.18PREDICTED: uncharacterized protein C9orf78 homolog... [more]
gi|1137190914|gb|OMO64154.1|2.865e-828.76Hepatocellular carcinoma-associated antigen 59 [Co... [more]
gi|729414258|ref|XP_010556664.1|3.451e-828.81PREDICTED: uncharacterized protein C9orf78 homolog... [more]
gi|567156431|ref|XP_006418356.1|4.389e-827.46hypothetical protein EUTSA_v10008452mg [Eutrema sa... [more]
gi|971511183|dbj|GAQ87028.1|8.965e-832.78hypothetical protein KFL_003260110 [Klebsormidium ... [more]
gi|356498525|ref|XP_003518101.1|1.294e-729.10PREDICTED: uncharacterized protein C9orf78 homolog... [more]
gi|1063461882|ref|XP_017979771.1|1.457e-728.52PREDICTED: uncharacterized protein C9orf78 [Theobr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna182rna182Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications