EWM30462.1, cds182 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|585113126|gb|EWM30462.1| (Hepatocellular carcinoma-associated antigen 59 [Nannochloropsis gaditana]) HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query: 1 MRRRRAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY 275
MRRRRAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY
Sbjct: 1 MRRRRAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY 275
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|298713725|emb|CBJ48916.1| (hypothetical protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 74.7146 bits (182), Expect = 1.578e-11 Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = 0
Query: 76 SIGEMMESSFTGMKYVTKDDTN------VHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSK--VSRREQLLAITEEIHARAR------GPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQG-EKKGEIIGSLTHNYHHHRKEYAINMRA 238
+I MMES+F HE++MEQY+++++G EE + + S +S ++L I E+ + ++ + +G VG GA IA++TG+AE+ALP+EFKL+N+E T AR E R+ + GSLT NY HH+KE+A+ +RA
Sbjct: 188 NISTMMESAFKSGGTGGWGAAADSAGSVPHEQLMEQYVKDKMGG--EEGADAKEEEDGGGGSNNMLSEEDRLYTIPEDFKKKVEEAKVEFDTGANRGDEMDGEVGSGAQIAWNTGLAEIALPIEFKLKNMEDTLAARDKMESVRAARRNAPGASSSLSGSLTANYSHHQKEWALQIRA 363
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|1111088878|ref|XP_019232060.1| (PREDICTED: uncharacterized protein C9orf78 [Nicotiana attenuata] >gi|1102150369|gb|OIT06645.1| hypothetical protein A4A49_17087 [Nicotiana attenuata]) HSP 1 Score: 65.855 bits (159), Expect = 7.578e-9 Identity = 66/226 (29.20%), Postives = 109/226 (48.23%), Query Frame = 0
Query: 24 LVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKES----------KAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRRE-QLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMR 237
L +++ QKQR+ +LGI A S+ + A GG+ S K + E+DE +++ +F V ++D N M +YIE+ L + + +V E ++V R E +L I E + + R E + ++TGIAE+ LP+E+KL+NIE TE A +LLQE++L+ + + E I S + +Y K+YA +R
Sbjct: 37 LEEVKFLQKQRERKLGIPAVSSSTAQVAAGGGASNNSAGGLVRKVNDKGEGDVEKDEL--------VLQDTFAQETAVLEEDPN-----MVRYIEQELAKKRGKNVDVADQVE----NEVKRAEDELYKIPEHLKVKRRN-------------SEESSTQWTTGIAEIQLPIEYKLKNIEETEAAKKLLQEKRLMGKARTE--SSIPSSYSADYFQRGKDYAEKLR 230
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|727603193|ref|XP_010474646.1| (PREDICTED: uncharacterized protein C9orf78 homolog [Camelina sativa]) HSP 1 Score: 65.4698 bits (158), Expect = 8.905e-9 Identity = 78/287 (27.18%), Postives = 129/287 (44.95%), Query Frame = 0
Query: 5 RAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRRE-QLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRARE----------------GKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKR 273
+A N D+EE ++ K +Q KQR+ +LGI A S+ + + G + K AE E++E +++ +F V +D N M +YIE+ L + + + E +++ R E +L I + + + R E + ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E I S + +Y K+YA +R RE KP + + + R TD + +F+KR
Sbjct: 22 KAANLDEEEKRRLALEEVKFLQ-----KQRERKLGIPALSSTAAQYSSIGKVKPVEKPEAEGEKEEL--------VLQDTFAQETAVLIEDPN-----MVKYIEQELAKKRGKNIDDAEEGE----NELKRVEDELYKIPDHLKVKKRS-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRPKSE--FSIPSSYSADYFQRGKDYAEKLR-REHPELYKDRGAQADGEGAKPSTTISNNNADSGKSRQAATDQIMLERFRKR 270
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|1137190914|gb|OMO64154.1| (Hepatocellular carcinoma-associated antigen 59 [Corchorus capsularis] >gi|1137214743|gb|OMO82325.1| Hepatocellular carcinoma-associated antigen 59 [Corchorus olitorius]) HSP 1 Score: 63.929 bits (154), Expect = 2.865e-8 Identity = 67/233 (28.76%), Postives = 112/233 (48.07%), Query Frame = 0
Query: 6 AENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMR 237
A SDDEE+ ++ K +Q KQR+ +LGI A +T +T G ++ K A+ E++E +++ +F V +D N M +Y+E+ L + + +E+ S ++L I E + + R E + ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E I S + +Y ++YA +R
Sbjct: 21 AAKSDDEEDRRLALEEVKFLQ-----KQRERKLGIPAITTAQT---GGIVAKVTEKGEADGEKEEL--------VLQDTFAQETAVMVEDPN-----MVKYVEQELAKKRGRNVDAKNENES---DLTSAEDELYKIPEHLKVKKRN-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRAKSE--VSIPSSYSADYFQRGRDYAEKLR 214
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|729414258|ref|XP_010556664.1| (PREDICTED: uncharacterized protein C9orf78 homolog [Tarenaya hassleriana]) HSP 1 Score: 63.5438 bits (153), Expect = 3.451e-8 Identity = 85/295 (28.81%), Postives = 135/295 (45.76%), Query Frame = 0
Query: 3 RRRAENSDDEENDNPGIKIKK-------LVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREG----KPKGIFRREDG-EGPRGRDTM-----------TDDQVYAKFKKR 273
R+R D+E++ + GI + L +++ QKQR+ +LGI A L T + G + K+ + E++E +++ +F V +D N M +YIE+ L + + + S+ V ++L I E + + R E + ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E I S + +Y K+YA +R RE K REDG EG R DT TD + +F+KR
Sbjct: 8 RKRTFQEDEEDDPSKGIASDEEEQRRLALEEVKFLQKQRERKLGIPA---LPTAQNSVGKVKTTEKSEGDGEKEEL--------VLQDTFAQETAVLVEDPN-----MVKYIEQELAKKRGKNLDT---SDQVENELKRVEDELYRIPEHLKVKKRS-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRPKSE--FSIPSSYSADYFQRGKDYAEKLR-REHPELYKDNNRGSREDGREGQRPSDTTNGEAGKSRQAATDQFMLERFRKR 267
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|567156431|ref|XP_006418356.1| (hypothetical protein EUTSA_v10008452mg [Eutrema salsugineum] >gi|557096127|gb|ESQ36709.1| hypothetical protein EUTSA_v10008452mg [Eutrema salsugineum]) HSP 1 Score: 63.5438 bits (153), Expect = 4.389e-8 Identity = 78/284 (27.46%), Postives = 127/284 (44.72%), Query Frame = 0
Query: 5 RAENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAR--------------EGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKR 273
+A NSD+EE ++ K +Q KQR+ +LGI A ST + G + K AE E++E +++ +F V +D N+ + +EQ + ++ G ++A EV + V ++L I + + + R E + ++TGIAEV LP+E+KL+NIE TE A +LLQE++L R + E I S + +Y ++YA +R EG I E + R TD + +F+KR
Sbjct: 22 KAANSDEEEKRRLALEEVKFLQ-----KQRERKLGIPALSTAQY---SIGKVKAVEKPEAEGEKEEL--------VLQDTFAQETAVLIEDPNMV-KYIEQELAKKRGKNLDDAEEVENELKRV-------EDELYKIPDHLKVKKRS-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLTGRPKSE--FNIPSSYSADYFQRGRDYAEKLRREHPELYKDKGPQADGEGAKPSISNNNGAESGKSRQAATDQIMLERFRKR 266
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|971511183|dbj|GAQ87028.1| (hypothetical protein KFL_003260110 [Klebsormidium nitens]) HSP 1 Score: 62.003 bits (149), Expect = 8.965e-8 Identity = 59/180 (32.78%), Postives = 89/180 (49.44%), Query Frame = 0
Query: 97 NVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQGEKK---GEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKR 273
V + M++YIEE L + AV ++ + E L +T E H R R K D + G +++TGI EV LPV++KL+NIE TE A+ +QL + +G+K I + + +YH KE+A N R G P+G + + G +G TDD V +F+KR
Sbjct: 88 TVEDPAMQRYIEEELAKRR---------GTAVQKAEQATNENELFMTPE-HLRVR-----KRGDVDLGS------SWTTGIVEVQLPVDYKLKNIEETEAAK----KQLAEQSRGDKSRLGSSIPANYSTDYHQRGKEFANN---RRGPPQG--KAHNASGEKGL-AATDDMVLERFRKR 236
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|356498525|ref|XP_003518101.1| (PREDICTED: uncharacterized protein C9orf78 homolog isoform X2 [Glycine max] >gi|947120926|gb|KRH69132.1| hypothetical protein GLYMA_02G006400 [Glycine max]) HSP 1 Score: 62.003 bits (149), Expect = 1.294e-7 Identity = 71/244 (29.10%), Postives = 117/244 (47.95%), Query Frame = 0
Query: 24 LVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRRE-QLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREGKP--KGIFRREDGEGPRGRDTMTD 263
L +I+ QKQR+ + GI A +L+ + GG +KAA + + D E+ + ++ +F V +D N M +YIE L + + E +++ R E +L I E + + R E + ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + + I S + +Y ++YA +R RE K ++D G + D+ TD
Sbjct: 44 LEEIKLLQKQRERKSGIPANPSLQVQSGTGGGL--AAKAAEKNDGDGGEKDELV---LQDTFAQETAVMDEDPN-----MVKYIEHELAKKRGRKIDAADQVE----NELKRAEDELYKIPEHLKVKRRN-------------SEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRTKSD--FSIPSSYSADYFQRGRDYAEKLR-REHPELYKDRSHQDDSSGSKQNDSSTD 257
BLAST of EWM30462.1 vs. NCBI_GenBank
Match: gi|1063461882|ref|XP_017979771.1| (PREDICTED: uncharacterized protein C9orf78 [Theobroma cacao]) HSP 1 Score: 61.6178 bits (148), Expect = 1.457e-7 Identity = 77/270 (28.52%), Postives = 125/270 (46.30%), Query Frame = 0
Query: 6 AENSDDEENDNPGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLG-------NVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKAADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERA-RLLQEEQLLLRQQGEKKGEIIGSLTHNYHHHRKEYAINMRAREG----KPKGIFRREDGEGPRGRDTMTD 263
A SDDEE+ ++ K +Q KQR+ + GI A T++T G ++ K A+ E++E +++ +F V +D N M +Y+E+ L + K E + +E ++L I E + + R E + ++TGIAEV LP+E+KL+NIE TE A +LLQE++L+ R + E I S + +Y ++YA +R RE K +G +++ G R DT TD
Sbjct: 21 APKSDDEEDRRLALEEVKFLQ-----KQRERKSGIPAIPTVQT---GGVVAKVTEKGEADGEKEEL--------VLQDTFAQETAVMVEDPN-----MVKYVEQELAKKRGRNMDTKNEVENDLTRAE----------DELYKIPEHLKVKRRN-------------SEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKLLQEKRLMGRAKSE--VSIPSSFSADYFQRGRDYAEKLR-REHPELYKDRG--SQDESSGSRPTDTSTD 241 The following BLAST results are available for this feature:
BLAST of EWM30462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|