EWM28862.1, cds1817 (CDS) Nannochloropsis gaditana

Overview
NameEWM28862.1
Unique Namecds1817
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:233405..235480 -

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Properties
Property NameValue
Protein idEWM28862.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g13.1516.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:233405..235480 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28862.1 vs. NCBI_GenBank
Match: gi|585111289|gb|EWM28862.1| (hypothetical protein Naga_100133g13 [Nannochloropsis gaditana])

HSP 1 Score: 1430.23 bits (3701), Expect = 0.000e+0
Identity = 691/691 (100.00%), Postives = 691/691 (100.00%), Query Frame = 0 
Query:    1 MEILLQLHAQGAIRFDFDFSKEKEQGTDLFDHFSIQCLDRLKHTMNAPCICSRRGWLLCLCCWVVAATSTCPLGSVTIGGVKLGVPSTPLDWCLGYNTTVRPNTDFTMVGVTITPQGDDFLVEHGRGLWKYLDIRTDIAENTTGTIFENLFGMTYSEYSAIPAVSSNPVKGWENQPIVYLTPKDLAKVWILTTDGAEGVSADLPSAQGGYASAAGTIAVAGQESGGQNPGAFTYQLNSGGRPQFNSPITALDPVFAVNPANDDGSNGGFWQISNFVTTPSVLPCFENAGWQGTTVDDAKKAILYNPFFQAKITMFWATKKIDNVVCITGDNTPCTPNQSACTGLDWIQCKPDCLAGALCKGDGIWNAPLVDSMFNILTGADQTAQRCNGMPTSLLSQFGTYLAAVDLIQAGYVPTAPSTWSTDTNFNVACQSMPRFVETICNCGAPCPPSGYPTHCSTLPYWAMPTSNGNTCGGQNCLDYQTSVTGFPIPTVPSGIVSVSATILAPAERRLLGGGGSSSESLSRWTMQEEHKRRLPTLVFDNFVYNSGLCTDPSDTTLNTTADFPIAWTKAPLADQIKAFIAQQASLNNVTICSLTVLSVRYVSRNICQSLLKMEKALALSLCKKDRVCRKAAQTNYRLNMYGCKTAHKFCRATLKEQRKNSLLACKQSSPFNLQCRKNATGTFRQLSKTC 691
            MEILLQLHAQGAIRFDFDFSKEKEQGTDLFDHFSIQCLDRLKHTMNAPCICSRRGWLLCLCCWVVAATSTCPLGSVTIGGVKLGVPSTPLDWCLGYNTTVRPNTDFTMVGVTITPQGDDFLVEHGRGLWKYLDIRTDIAENTTGTIFENLFGMTYSEYSAIPAVSSNPVKGWENQPIVYLTPKDLAKVWILTTDGAEGVSADLPSAQGGYASAAGTIAVAGQESGGQNPGAFTYQLNSGGRPQFNSPITALDPVFAVNPANDDGSNGGFWQISNFVTTPSVLPCFENAGWQGTTVDDAKKAILYNPFFQAKITMFWATKKIDNVVCITGDNTPCTPNQSACTGLDWIQCKPDCLAGALCKGDGIWNAPLVDSMFNILTGADQTAQRCNGMPTSLLSQFGTYLAAVDLIQAGYVPTAPSTWSTDTNFNVACQSMPRFVETICNCGAPCPPSGYPTHCSTLPYWAMPTSNGNTCGGQNCLDYQTSVTGFPIPTVPSGIVSVSATILAPAERRLLGGGGSSSESLSRWTMQEEHKRRLPTLVFDNFVYNSGLCTDPSDTTLNTTADFPIAWTKAPLADQIKAFIAQQASLNNVTICSLTVLSVRYVSRNICQSLLKMEKALALSLCKKDRVCRKAAQTNYRLNMYGCKTAHKFCRATLKEQRKNSLLACKQSSPFNLQCRKNATGTFRQLSKTC
Sbjct:    1 MEILLQLHAQGAIRFDFDFSKEKEQGTDLFDHFSIQCLDRLKHTMNAPCICSRRGWLLCLCCWVVAATSTCPLGSVTIGGVKLGVPSTPLDWCLGYNTTVRPNTDFTMVGVTITPQGDDFLVEHGRGLWKYLDIRTDIAENTTGTIFENLFGMTYSEYSAIPAVSSNPVKGWENQPIVYLTPKDLAKVWILTTDGAEGVSADLPSAQGGYASAAGTIAVAGQESGGQNPGAFTYQLNSGGRPQFNSPITALDPVFAVNPANDDGSNGGFWQISNFVTTPSVLPCFENAGWQGTTVDDAKKAILYNPFFQAKITMFWATKKIDNVVCITGDNTPCTPNQSACTGLDWIQCKPDCLAGALCKGDGIWNAPLVDSMFNILTGADQTAQRCNGMPTSLLSQFGTYLAAVDLIQAGYVPTAPSTWSTDTNFNVACQSMPRFVETICNCGAPCPPSGYPTHCSTLPYWAMPTSNGNTCGGQNCLDYQTSVTGFPIPTVPSGIVSVSATILAPAERRLLGGGGSSSESLSRWTMQEEHKRRLPTLVFDNFVYNSGLCTDPSDTTLNTTADFPIAWTKAPLADQIKAFIAQQASLNNVTICSLTVLSVRYVSRNICQSLLKMEKALALSLCKKDRVCRKAAQTNYRLNMYGCKTAHKFCRATLKEQRKNSLLACKQSSPFNLQCRKNATGTFRQLSKTC 691
[Close]
BLAST of EWM28862.1 vs. NCBI_GenBank
Match: gi|553184735|ref|XP_005854139.1| (hypothetical protein NGA_0203800 [Nannochloropsis gaditana CCMP526] >gi|422294916|gb|EKU22216.1| hypothetical protein NGA_0203800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 371.703 bits (953), Expect = 2.607e-122
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 
Query:  108 MVGVTITPQGDDFLVEHGRGLWKYLDIRTDIAENTTGTIFENLFGMTYSEYSAIPAVSSNPVKGWENQPIVYLTPKDLAKVWILTTDGAEGVSADLPSAQGGYASAAGTIAVAGQESGGQNPGAFTYQLNSGGRPQFNSPITALDPVFAVNPANDDGSNGGFWQISNFVTTPSVLPCFE 286
            MVGVTITPQGDDFLVEHGRGLWKYLDIRTDIAENTTGTIFENLFGMTYSEYSAIPAVSSNPVKGWENQPIVYLTPKDLAKVWILTTDGAEGVSADLPSAQGGYASAAGTIAVAGQESGGQNPGAFTYQLNSGGRPQFNSPITALDPVFAVNPANDDGSNGGFWQISNFVTTPSVLPCFE
Sbjct:    1 MVGVTITPQGDDFLVEHGRGLWKYLDIRTDIAENTTGTIFENLFGMTYSEYSAIPAVSSNPVKGWENQPIVYLTPKDLAKVWILTTDGAEGVSADLPSAQGGYASAAGTIAVAGQESGGQNPGAFTYQLNSGGRPQFNSPITALDPVFAVNPANDDGSNGGFWQISNFVTTPSVLPCFE 179
The following BLAST results are available for this feature:
BLAST of EWM28862.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111289|gb|EWM28862.1|0.000e+0100.00hypothetical protein Naga_100133g13 [Nannochlorops... [more]
gi|553184735|ref|XP_005854139.1|2.607e-122100.00hypothetical protein NGA_0203800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1821rna1821Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications