EWM28873.1, cds1799 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|585111305|gb|EWM28873.1| (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana]) HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0 Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0 Query: 1 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPHPQGNLIPMSYQVLFTRKKDGRYLTQCHVLLDSQGDAWHHQRQSRGEGNRARL 422 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPHPQGNLIPMSYQVLFTRKKDGRYLTQCHVLLDSQGDAWHHQRQSRGEGNRARL Sbjct: 1 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPHPQGNLIPMSYQVLFTRKKDGRYLTQCHVLLDSQGDAWHHQRQSRGEGNRARL 422
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|553183577|ref|XP_005853925.1| (thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526] >gi|422295137|gb|EKU22436.1| thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 464.922 bits (1195), Expect = 1.252e-161 Identity = 226/242 (93.39%), Postives = 233/242 (96.28%), Query Frame = 0 Query: 1 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNF 242 MSLKTISPH YRSKMTRQE+TSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGP+VRLRLRVPSHLCDNY+NNH LLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSA ++ ++ F Sbjct: 1 MSLKTISPHGYRSKMTRQEQTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPRVRLRLRVPSHLCDNYDNNHCLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAASVLSMVGPPQF 242
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|585109543|gb|EWM27338.1| (Thioesterase superfamily [Nannochloropsis gaditana]) HSP 1 Score: 97.4413 bits (241), Expect = 6.966e-19 Identity = 79/266 (29.70%), Postives = 119/266 (44.74%), Query Frame = 0 Query: 73 VPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTA--WTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTEL 336 + +LC + L AG +TA FDE+S+ A + D HRPGVSV+L+ V++ + G + +++ KIG++L F + L D A+ + +A G+H K+L M W +A PL Y + LL R+ R A +I LDN + + A+ AS V P+ CN +HGGA A+ AE +AL AAR SQ PR R+LS+ Y+ + +L Sbjct: 58 ITKYLC-RTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAF----TPLLYPIVRKSLLGLTRRHVATGE-------------RVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQAT-------RASLHVKPRHCNGLFKMHGGALAVAAEE--IALLDVAARKKESTSQ--APRARALSLHYLQANDRVVDL 294
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|219109511|ref|XP_002176510.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411045|gb|EEC50973.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 92.4337 bits (228), Expect = 2.950e-17 Identity = 81/254 (31.89%), Postives = 113/254 (44.49%), Query Frame = 0 Query: 94 TAWFDEVSSWAFVSADG-RHRPGVSVSL-----NTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL-KMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLV 340 T D+V++WA V D R RPGVSV+L + L V VG EVEI + KIG ++GF + DVATG+ + HG HVKFL MG + + +PL L A + PS PE P+ ++E +V T E SA+ +V P + G +HGGA A+L E LA W +L V ++ ++YMSP ++T+L LLV Sbjct: 79 TTMIDDVTTWALVLEDSKRSRPGVSVTLQNKWGTSVALRKVAVGDEVEIAATVNKIGRSMGFVQASVHDVATGELVCHGSHVKFLSSMGMVADFLLSSRGWPLAKLYADYMEGPS------------PEAIPT---------------------THSLFE-------------AVKYTSETSATIQVTPGHRSLGGPIHGGAQAVLME--LLAREFAQNEW-----NSSLVSVDTIHVEYMSPPSRHTKLDLLV 279
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|340382160|ref|XP_003389589.1| (PREDICTED: acyl-coenzyme A thioesterase 13-like [Amphimedon queenslandica]) HSP 1 Score: 72.0182 bits (175), Expect = 1.259e-11 Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 0 Query: 88 LDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172 L G D VS+WA VSA+ H PGVS LN + + +G V I + C K+G+TL FA + LL+ TGK +A GRH K++ Sbjct: 57 LHGGLTATIIDSVSTWAIVSAE--HPPGVSTDLNISYMRPAKIGETVIIDAECLKVGKTLAFASVSLLNKDTGKLIAQGRHTKYI 139
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|961720054|ref|XP_014920272.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Acinonyx jubatus]) HSP 1 Score: 70.4774 bits (171), Expect = 4.747e-11 Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 0 Query: 20 RTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172 R ++ +LELL K+ SG RD + ++ V A PG + +RV DN+ N + L G + D VS+ A VS + R PGVSV +N T ++ +G ++ I +H K G+TL F + + ATGK +A GRH K L Sbjct: 3 RLTQHLLELL----KTMGSG----RDFDRVLEKMTLVSAT---PGKLI-CEMRVE----DNHANKYGTLHGGMIATLVDNVSTLALVSTE-RGAPGVSVDMNITYMAPAKIGEDIVITAHVLKEGKTLAFTSVDVTKKATGKLIAQGRHTKHL 138
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|591294481|ref|XP_007074481.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Panthera tigris altaica] >gi|1111210196|ref|XP_019280823.1| PREDICTED: acyl-coenzyme A thioesterase 13 [Panthera pardus]) HSP 1 Score: 70.0922 bits (170), Expect = 8.153e-11 Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 0 Query: 20 RTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172 R ++ +LELL K+ SG RD + L+ V + PG + +RV D++ N + L G + D +S+ A VS + R PGVSV +N T ++ +G ++ I +H K G+TL F + ++ ATGK +A GRH K L Sbjct: 3 RLTQHLLELL----KTMGSG----RDFDR---VLKKVTLVSATPGKLI-CEMRVE----DDHANKYGTLHGGMIATLVDNISTLALVSTE-RGAPGVSVDMNITYMAPAKIGEDIVITAHVLKEGKTLAFTSVDVMKKATGKLVAQGRHTKHL 138
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|671000592|ref|XP_008691154.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Ursus maritimus]) HSP 1 Score: 68.5514 bits (166), Expect = 2.582e-10 Identity = 48/157 (30.57%), Postives = 79/157 (50.32%), Query Frame = 0 Query: 20 RTSRQVLELLHAVSKS-AFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMG 175 R +++VLEL+ ++++ F VL + V + PG +V ++V + + N + L G D +S+ A + + R PGVSV +N T +S VG ++ I +H K G+TL F + L++ TGK +A GRH K+L G Sbjct: 3 RLTQEVLELMKSMTRVPGFDRVL------------EKVTLVSAAPG-KVICEMKVE----EVHTNKYGTLHGGMTATLVDNISTMALMCTE-RGAPGVSVDMNITYMSPAKVGEDLVITAHILKQGKTLAFTSVDLMNKTTGKLVAQGRHTKYLGNG 141
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|585175117|ref|XP_006739369.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Leptonychotes weddellii] >gi|1212204115|ref|XP_021552821.1| acyl-coenzyme A thioesterase 13 [Neomonachus schauinslandi]) HSP 1 Score: 68.1662 bits (165), Expect = 2.812e-10 Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0 Query: 53 LQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172 L+ V + PG +V ++V D++ N + L G D VS+ A + + R PGVSV +N T +S +G ++ I +H K G+TL FA + L++ TGK +A GRH K L Sbjct: 25 LEKVTLVSAAPG-KVVCEMKVE----DDHTNKYGTLHGGLTATLVDNVSTMALLCTE-RGAPGVSVDMNITYMSPAKIGEDIVITAHVLKQGKTLAFASVDLMNKTTGKLVAQGRHTKHL 138
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|507688938|ref|XP_004712533.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Echinops telfairi]) HSP 1 Score: 68.1662 bits (165), Expect = 2.896e-10 Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 0 Query: 53 LQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172 L+ V + PG +V +RV + + N L G D +S+ A + D R PGVSV +N T +S VG +V I +H K G+TL FA + L + TGK +A GRH K L Sbjct: 25 LEKVSVVSSAPG-KVVCEMRVE----EQHANKMGTLHGGLTATLVDSISTLALLCTD-RAAPGVSVDMNITYMSPAKVGEDVVITAHVLKQGKTLAFASVDLTNKVTGKLIAQGRHTKHL 138 The following BLAST results are available for this feature:
BLAST of EWM28873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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