EWM28873.1, cds1799 (CDS) Nannochloropsis gaditana

Overview
NameEWM28873.1
Unique Namecds1799
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:193501..193986 -
Alignment locationCM002458.1:193117..193321 -
Alignment locationCM002458.1:192432..193009 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28873.1
Productacyl-coenzyme a thioesterase 13
Orig transcript idgnl|cribi|Naga_100095g12.10165.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:193501..193986 -
CM002458.1supercontigCM002458.1:193117..193321 -
CM002458.1supercontigCM002458.1:192432..193009 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029069HotDog_dom
Homology
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|585111305|gb|EWM28873.1| (acyl-coenzyme a thioesterase 13 [Nannochloropsis gaditana])

HSP 1 Score: 871.307 bits (2250), Expect = 0.000e+0
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0
Query:    1 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPHPQGNLIPMSYQVLFTRKKDGRYLTQCHVLLDSQGDAWHHQRQSRGEGNRARL 422
            MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPHPQGNLIPMSYQVLFTRKKDGRYLTQCHVLLDSQGDAWHHQRQSRGEGNRARL
Sbjct:    1 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLVRGMRVERGAGEGDKHSPSRSLFPPLDVAPHPQGNLIPMSYQVLFTRKKDGRYLTQCHVLLDSQGDAWHHQRQSRGEGNRARL 422          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|553183577|ref|XP_005853925.1| (thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526] >gi|422295137|gb|EKU22436.1| thioesterase superfamily member 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 464.922 bits (1195), Expect = 1.252e-161
Identity = 226/242 (93.39%), Postives = 233/242 (96.28%), Query Frame = 0
Query:    1 MSLKTISPHDYRSKMTRQERTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNF 242
            MSLKTISPH YRSKMTRQE+TSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGP+VRLRLRVPSHLCDNY+NNH LLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSA ++  ++    F
Sbjct:    1 MSLKTISPHGYRSKMTRQEQTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPRVRLRLRVPSHLCDNYDNNHCLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAASVLSMVGPPQF 242          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|585109543|gb|EWM27338.1| (Thioesterase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 97.4413 bits (241), Expect = 6.966e-19
Identity = 79/266 (29.70%), Postives = 119/266 (44.74%), Query Frame = 0
Query:   73 VPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMGTA--WTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTEL 336
            +  +LC   +     L AG +TA FDE+S+ A +  D  HRPGVSV+L+  V++ +  G  + +++   KIG++L F  + L D A+ + +A G+H K+L M     W +A      PL Y +    LL   R+                   R     A +I     LDN  +   +          A+        AS  V P+ CN    +HGGA A+ AE   +AL   AAR     SQ   PR R+LS+ Y+    +  +L
Sbjct:   58 ITKYLC-RTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAF----TPLLYPIVRKSLLGLTRRHVATGE-------------RVNTHDASSIFDHFPLDNLTLENESDKGDERQRLQAT-------RASLHVKPRHCNGLFKMHGGALAVAAEE--IALLDVAARKKESTSQ--APRARALSLHYLQANDRVVDL 294          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|219109511|ref|XP_002176510.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411045|gb|EEC50973.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 92.4337 bits (228), Expect = 2.950e-17
Identity = 81/254 (31.89%), Postives = 113/254 (44.49%), Query Frame = 0
Query:   94 TAWFDEVSSWAFVSADG-RHRPGVSVSL-----NTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL-KMGTAWTVAMHAWAFPLTYLMASAVLLPSVRQRTQKSSSFPPEMAPSPDLPRTEPGSAVNINRLLALDNFHVYEPAGAASPPLAFPASVPLTMEASASFRVIPQVCNSFGSLHGGAAAILAERAALALYHQAARWAGERSQHALPRVRSLSIDYMSPCKKNTELLLLV 340
            T   D+V++WA V  D  R RPGVSV+L      +  L  V VG EVEI +   KIG ++GF    + DVATG+ + HG HVKFL  MG      + +  +PL  L A  +  PS            PE  P+                        ++E             +V  T E SA+ +V P   +  G +HGGA A+L E   LA       W       +L  V ++ ++YMSP  ++T+L LLV
Sbjct:   79 TTMIDDVTTWALVLEDSKRSRPGVSVTLQNKWGTSVALRKVAVGDEVEIAATVNKIGRSMGFVQASVHDVATGELVCHGSHVKFLSSMGMVADFLLSSRGWPLAKLYADYMEGPS------------PEAIPT---------------------THSLFE-------------AVKYTSETSATIQVTPGHRSLGGPIHGGAQAVLME--LLAREFAQNEW-----NSSLVSVDTIHVEYMSPPSRHTKLDLLV 279          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|340382160|ref|XP_003389589.1| (PREDICTED: acyl-coenzyme A thioesterase 13-like [Amphimedon queenslandica])

HSP 1 Score: 72.0182 bits (175), Expect = 1.259e-11
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 0
Query:   88 LDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172
            L  G      D VS+WA VSA+  H PGVS  LN + +    +G  V I + C K+G+TL FA + LL+  TGK +A GRH K++
Sbjct:   57 LHGGLTATIIDSVSTWAIVSAE--HPPGVSTDLNISYMRPAKIGETVIIDAECLKVGKTLAFASVSLLNKDTGKLIAQGRHTKYI 139          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|961720054|ref|XP_014920272.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Acinonyx jubatus])

HSP 1 Score: 70.4774 bits (171), Expect = 4.747e-11
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 0
Query:   20 RTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172
            R ++ +LELL    K+  SG    RD +    ++  V A    PG  +   +RV     DN+ N +  L  G +    D VS+ A VS + R  PGVSV +N T ++   +G ++ I +H  K G+TL F  + +   ATGK +A GRH K L
Sbjct:    3 RLTQHLLELL----KTMGSG----RDFDRVLEKMTLVSAT---PGKLI-CEMRVE----DNHANKYGTLHGGMIATLVDNVSTLALVSTE-RGAPGVSVDMNITYMAPAKIGEDIVITAHVLKEGKTLAFTSVDVTKKATGKLIAQGRHTKHL 138          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|591294481|ref|XP_007074481.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Panthera tigris altaica] >gi|1111210196|ref|XP_019280823.1| PREDICTED: acyl-coenzyme A thioesterase 13 [Panthera pardus])

HSP 1 Score: 70.0922 bits (170), Expect = 8.153e-11
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 0
Query:   20 RTSRQVLELLHAVSKSAFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172
            R ++ +LELL    K+  SG    RD +     L+ V  +   PG  +   +RV     D++ N +  L  G +    D +S+ A VS + R  PGVSV +N T ++   +G ++ I +H  K G+TL F  + ++  ATGK +A GRH K L
Sbjct:    3 RLTQHLLELL----KTMGSG----RDFDR---VLKKVTLVSATPGKLI-CEMRVE----DDHANKYGTLHGGMIATLVDNISTLALVSTE-RGAPGVSVDMNITYMAPAKIGEDIVITAHVLKEGKTLAFTSVDVMKKATGKLVAQGRHTKHL 138          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|671000592|ref|XP_008691154.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Ursus maritimus])

HSP 1 Score: 68.5514 bits (166), Expect = 2.582e-10
Identity = 48/157 (30.57%), Postives = 79/157 (50.32%), Query Frame = 0
Query:   20 RTSRQVLELLHAVSKS-AFSGVLLRRDIEPNATELQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFLKMG 175
            R +++VLEL+ ++++   F  VL            + V  +   PG +V   ++V     + + N +  L  G      D +S+ A +  + R  PGVSV +N T +S   VG ++ I +H  K G+TL F  + L++  TGK +A GRH K+L  G
Sbjct:    3 RLTQEVLELMKSMTRVPGFDRVL------------EKVTLVSAAPG-KVICEMKVE----EVHTNKYGTLHGGMTATLVDNISTMALMCTE-RGAPGVSVDMNITYMSPAKVGEDLVITAHILKQGKTLAFTSVDLMNKTTGKLVAQGRHTKYLGNG 141          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|585175117|ref|XP_006739369.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Leptonychotes weddellii] >gi|1212204115|ref|XP_021552821.1| acyl-coenzyme A thioesterase 13 [Neomonachus schauinslandi])

HSP 1 Score: 68.1662 bits (165), Expect = 2.812e-10
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0
Query:   53 LQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172
            L+ V  +   PG +V   ++V     D++ N +  L  G      D VS+ A +  + R  PGVSV +N T +S   +G ++ I +H  K G+TL FA + L++  TGK +A GRH K L
Sbjct:   25 LEKVTLVSAAPG-KVVCEMKVE----DDHTNKYGTLHGGLTATLVDNVSTMALLCTE-RGAPGVSVDMNITYMSPAKIGEDIVITAHVLKQGKTLAFASVDLMNKTTGKLVAQGRHTKHL 138          
BLAST of EWM28873.1 vs. NCBI_GenBank
Match: gi|507688938|ref|XP_004712533.1| (PREDICTED: acyl-coenzyme A thioesterase 13 [Echinops telfairi])

HSP 1 Score: 68.1662 bits (165), Expect = 2.896e-10
Identity = 44/120 (36.67%), Postives = 61/120 (50.83%), Query Frame = 0
Query:   53 LQNVKALKIGPGPQVRLRLRVPSHLCDNYNNNHRLLDAGAVTAWFDEVSSWAFVSADGRHRPGVSVSLNTTVLSWVPVGTEVEIQSHCKKIGETLGFADMMLLDVATGKELAHGRHVKFL 172
            L+ V  +   PG +V   +RV     + + N    L  G      D +S+ A +  D R  PGVSV +N T +S   VG +V I +H  K G+TL FA + L +  TGK +A GRH K L
Sbjct:   25 LEKVSVVSSAPG-KVVCEMRVE----EQHANKMGTLHGGLTATLVDSISTLALLCTD-RAAPGVSVDMNITYMSPAKVGEDVVITAHVLKQGKTLAFASVDLTNKVTGKLIAQGRHTKHL 138          
The following BLAST results are available for this feature:
BLAST of EWM28873.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111305|gb|EWM28873.1|0.000e+0100.00acyl-coenzyme a thioesterase 13 [Nannochloropsis g... [more]
gi|553183577|ref|XP_005853925.1|1.252e-16193.39thioesterase superfamily member 2 [Nannochloropsis... [more]
gi|585109543|gb|EWM27338.1|6.966e-1929.70Thioesterase superfamily [Nannochloropsis gaditana... [more]
gi|219109511|ref|XP_002176510.1|2.950e-1731.89predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|340382160|ref|XP_003389589.1|1.259e-1143.53PREDICTED: acyl-coenzyme A thioesterase 13-like [A... [more]
gi|961720054|ref|XP_014920272.1|4.747e-1134.64PREDICTED: acyl-coenzyme A thioesterase 13 [Acinon... [more]
gi|591294481|ref|XP_007074481.1|8.153e-1133.33PREDICTED: acyl-coenzyme A thioesterase 13 [Panthe... [more]
gi|671000592|ref|XP_008691154.1|2.582e-1030.57PREDICTED: acyl-coenzyme A thioesterase 13 [Ursus ... [more]
gi|585175117|ref|XP_006739369.1|2.812e-1035.00PREDICTED: acyl-coenzyme A thioesterase 13 [Lepton... [more]
gi|507688938|ref|XP_004712533.1|2.896e-1036.67PREDICTED: acyl-coenzyme A thioesterase 13 [Echino... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1803rna1803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications