EWM28883.1, cds1797 (CDS) Nannochloropsis gaditana

Overview
NameEWM28883.1
Unique Namecds1797
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:180940..182931 +

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Properties
Property NameValue
Protein idEWM28883.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100095g9.10175.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:180940..182931 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28883.1 vs. NCBI_GenBank
Match: gi|585111315|gb|EWM28883.1| (hypothetical protein Naga_100095g9 [Nannochloropsis gaditana])

HSP 1 Score: 1348.57 bits (3489), Expect = 0.000e+0
Identity = 663/663 (100.00%), Postives = 663/663 (100.00%), Query Frame = 0
Query:    1 MERDTQSISQDNARHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSPSLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRRKAHEALRGPNEGMAGGKQDREGPTPSEGGREREHNDLLGLGRFHQLRLSPSPVFRREMTRDFAPVRFPVGGTQVRPCGPGRGAREVEVEGGRQGGLESTLTGGEVAGREKGLAVSHTRRPSRLHVEELRLEGGREGRKEGGREGGREGGRAGARTGAGFCRVATPIPRLADGVARNGYDASFTRTCLSGLSTRLETGAEGGTASAAPSFLPPGNGPSPCGMEGGRERGKKGRAWEEDGDEDGSHGWRRCRPRTFSFQSCSPVMTALASPYLHPISTGPSTGTSSSPSFSDFVLRGSR 663
            MERDTQSISQDNARHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSPSLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRRKAHEALRGPNEGMAGGKQDREGPTPSEGGREREHNDLLGLGRFHQLRLSPSPVFRREMTRDFAPVRFPVGGTQVRPCGPGRGAREVEVEGGRQGGLESTLTGGEVAGREKGLAVSHTRRPSRLHVEELRLEGGREGRKEGGREGGREGGRAGARTGAGFCRVATPIPRLADGVARNGYDASFTRTCLSGLSTRLETGAEGGTASAAPSFLPPGNGPSPCGMEGGRERGKKGRAWEEDGDEDGSHGWRRCRPRTFSFQSCSPVMTALASPYLHPISTGPSTGTSSSPSFSDFVLRGSR
Sbjct:    1 MERDTQSISQDNARHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSPSLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRRKAHEALRGPNEGMAGGKQDREGPTPSEGGREREHNDLLGLGRFHQLRLSPSPVFRREMTRDFAPVRFPVGGTQVRPCGPGRGAREVEVEGGRQGGLESTLTGGEVAGREKGLAVSHTRRPSRLHVEELRLEGGREGRKEGGREGGREGGRAGARTGAGFCRVATPIPRLADGVARNGYDASFTRTCLSGLSTRLETGAEGGTASAAPSFLPPGNGPSPCGMEGGRERGKKGRAWEEDGDEDGSHGWRRCRPRTFSFQSCSPVMTALASPYLHPISTGPSTGTSSSPSFSDFVLRGSR 663          
BLAST of EWM28883.1 vs. NCBI_GenBank
Match: gi|929749013|ref|XP_014149490.1| (hypothetical protein SARC_11891 [Sphaeroforma arctica JP610] >gi|906940866|gb|KNC75588.1| hypothetical protein SARC_11891 [Sphaeroforma arctica JP610])

HSP 1 Score: 62.7734 bits (151), Expect = 9.352e-8
Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 0
Query:  126 FIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCM 210
            F RT + N SE++       ++ KE             +     HI+E ILNLRCP+CM VF  FD C A+ C  C   FC  C+
Sbjct:   10 FFRTTIANSSETSGAAAVASSDRKEC------------IRKHVRHIQEEILNLRCPKCMQVFTTFDGCFALHCHRCQTGFCAWCL 82          
BLAST of EWM28883.1 vs. NCBI_GenBank
Match: gi|923122515|ref|XP_013754727.1| (hypothetical protein AMSG_09342 [Thecamonas trahens ATCC 50062] >gi|906559807|gb|KNC53050.1| hypothetical protein AMSG_09342 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 66.2402 bits (160), Expect = 1.512e-7
Identity = 42/143 (29.37%), Postives = 63/143 (44.06%), Query Frame = 0
Query:  136 ESARE---TDTLVNENKEKKALTME-----DPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSL 270
            E+ RE   T+ L  E +++ A  ME     D +   V  AA H++  IL LRCP C   F+D+D C A+ C AC  +FC LC+      +    ++   D              G  F+Q  +      V ++  L  YL +L
Sbjct:  590 EAVREGAMTERLEQEFEDRLAQRMERALAQDAESQEVERAALHVQNQILTLRCPSCTTAFFDYDGCAALRCGACQATFCALCLTACDSSNATHRHVRTCDLNPNP---------GSYFVQAAQFEAVHRVRKRDLLAAYLDTL 723          
The following BLAST results are available for this feature:
BLAST of EWM28883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111315|gb|EWM28883.1|0.000e+0100.00hypothetical protein Naga_100095g9 [Nannochloropsi... [more]
gi|929749013|ref|XP_014149490.1|9.352e-836.47hypothetical protein SARC_11891 [Sphaeroforma arct... [more]
gi|923122515|ref|XP_013754727.1|1.512e-729.37hypothetical protein AMSG_09342 [Thecamonas trahen... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1801rna1801Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications