EWM28883.1, cds1797 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28883.1 vs. NCBI_GenBank
Match: gi|585111315|gb|EWM28883.1| (hypothetical protein Naga_100095g9 [Nannochloropsis gaditana]) HSP 1 Score: 1348.57 bits (3489), Expect = 0.000e+0 Identity = 663/663 (100.00%), Postives = 663/663 (100.00%), Query Frame = 0
Query: 1 MERDTQSISQDNARHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSPSLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRRKAHEALRGPNEGMAGGKQDREGPTPSEGGREREHNDLLGLGRFHQLRLSPSPVFRREMTRDFAPVRFPVGGTQVRPCGPGRGAREVEVEGGRQGGLESTLTGGEVAGREKGLAVSHTRRPSRLHVEELRLEGGREGRKEGGREGGREGGRAGARTGAGFCRVATPIPRLADGVARNGYDASFTRTCLSGLSTRLETGAEGGTASAAPSFLPPGNGPSPCGMEGGRERGKKGRAWEEDGDEDGSHGWRRCRPRTFSFQSCSPVMTALASPYLHPISTGPSTGTSSSPSFSDFVLRGSR 663
MERDTQSISQDNARHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSPSLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRRKAHEALRGPNEGMAGGKQDREGPTPSEGGREREHNDLLGLGRFHQLRLSPSPVFRREMTRDFAPVRFPVGGTQVRPCGPGRGAREVEVEGGRQGGLESTLTGGEVAGREKGLAVSHTRRPSRLHVEELRLEGGREGRKEGGREGGREGGRAGARTGAGFCRVATPIPRLADGVARNGYDASFTRTCLSGLSTRLETGAEGGTASAAPSFLPPGNGPSPCGMEGGRERGKKGRAWEEDGDEDGSHGWRRCRPRTFSFQSCSPVMTALASPYLHPISTGPSTGTSSSPSFSDFVLRGSR
Sbjct: 1 MERDTQSISQDNARHCMICLGCPSTSTPPDKAVALSTADLSAESSPFLQCPIDGRIICHSKCLEDLVLFNVAPERLRAYHGLVPCPWIDASALRESPCSHRWQYRDLVKHLSFEMQIKYTEEMTAFIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSLAVSPSLPPSLPPFSSLPLAPSLSTDASLPQDDARLTAPGMDIRAERSEGEAAGEEVRRAAEVALVGVPQPALMERVLFQVARECNDVGLDVNEIRRKAHEALRGPNEGMAGGKQDREGPTPSEGGREREHNDLLGLGRFHQLRLSPSPVFRREMTRDFAPVRFPVGGTQVRPCGPGRGAREVEVEGGRQGGLESTLTGGEVAGREKGLAVSHTRRPSRLHVEELRLEGGREGRKEGGREGGREGGRAGARTGAGFCRVATPIPRLADGVARNGYDASFTRTCLSGLSTRLETGAEGGTASAAPSFLPPGNGPSPCGMEGGRERGKKGRAWEEDGDEDGSHGWRRCRPRTFSFQSCSPVMTALASPYLHPISTGPSTGTSSSPSFSDFVLRGSR 663
BLAST of EWM28883.1 vs. NCBI_GenBank
Match: gi|929749013|ref|XP_014149490.1| (hypothetical protein SARC_11891 [Sphaeroforma arctica JP610] >gi|906940866|gb|KNC75588.1| hypothetical protein SARC_11891 [Sphaeroforma arctica JP610]) HSP 1 Score: 62.7734 bits (151), Expect = 9.352e-8 Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 0
Query: 126 FIRTLLGNPSESARETDTLVNENKEKKALTMEDPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCM 210
F RT + N SE++ ++ KE + HI+E ILNLRCP+CM VF FD C A+ C C FC C+
Sbjct: 10 FFRTTIANSSETSGAAAVASSDRKEC------------IRKHVRHIQEEILNLRCPKCMQVFTTFDGCFALHCHRCQTGFCAWCL 82
BLAST of EWM28883.1 vs. NCBI_GenBank
Match: gi|923122515|ref|XP_013754727.1| (hypothetical protein AMSG_09342 [Thecamonas trahens ATCC 50062] >gi|906559807|gb|KNC53050.1| hypothetical protein AMSG_09342 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 66.2402 bits (160), Expect = 1.512e-7 Identity = 42/143 (29.37%), Postives = 63/143 (44.06%), Query Frame = 0
Query: 136 ESARE---TDTLVNENKEKKALTME-----DPDDPRVLSAAAHIKENILNLRCPQCMAVFYDFDACCAVTCRACGISFCGLCMMPPGGKSKKDGNMEGSDRTKEAAHAHVIAVHGRLFMQEEEILRQQNVFRQHRLVHYLVSL 270
E+ RE T+ L E +++ A ME D + V AA H++ IL LRCP C F+D+D C A+ C AC +FC LC+ + ++ D G F+Q + V ++ L YL +L
Sbjct: 590 EAVREGAMTERLEQEFEDRLAQRMERALAQDAESQEVERAALHVQNQILTLRCPSCTTAFFDYDGCAALRCGACQATFCALCLTACDSSNATHRHVRTCDLNPNP---------GSYFVQAAQFEAVHRVRKRDLLAAYLDTL 723 The following BLAST results are available for this feature:
BLAST of EWM28883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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