EWM28882.1, cds1792 (CDS) Nannochloropsis gaditana

Overview
NameEWM28882.1
Unique Namecds1792
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:153672..153723 +
Alignment locationCM002458.1:154171..155027 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28882.1
Productribosomal protein l15
Orig transcript idgnl|cribi|Naga_100095g3.10174.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:153672..153723 +
CM002458.1supercontigCM002458.1:154171..155027 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR030878Ribosomal_L15
IPR005749Ribosomal_L15_bac-type
IPR021131Ribosomal_L18e/L15P
Homology
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|585111314|gb|EWM28882.1| (ribosomal protein l15 [Nannochloropsis gaditana])

HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query:    1 MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA 302
            MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA
Sbjct:    1 MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA 302          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|1072234356|gb|OEU19086.1| (ribosomal protein L15 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 175.637 bits (444), Expect = 2.178e-50
Identity = 104/234 (44.44%), Postives = 135/234 (57.69%), Query Frame = 0
Query:   12 VIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGS-LTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFK-VVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 241
            V+ A+AG + S         S LR S+    AG G  +TM+L+D KRRD            + D    E ++ NLRP PG+   + RKGRG A G G + G+GMRGQ SR G   RPGFEGGQTPLYRR PK+ GRPMGPGH + +Y +++++ LN       S ++ +   L     +TK K D  K VVG D    + +TV AH FT +A  AIE AGGKC LL P+T EV+
Sbjct:    8 VLIALAGLVASSDAFSTFMGSSLRTSVPTTNAGNGDGMTMKLYDWKRRDAD-------ESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNV----DSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|1210525559|dbj|GAX15628.1| (hypothetical protein FisN_3Hh100 [Fistulifera solaris])

HSP 1 Score: 174.866 bits (442), Expect = 4.422e-50
Identity = 105/239 (43.93%), Postives = 139/239 (58.16%), Query Frame = 0
Query:   10 LAVIPAVAGFMLSGSFKGQQSQSLLRPS--IQAHRAGAGSLTMRLFDHKRR--DMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 242
            L+VI A+  F  S S +   + + +  S  + +    +  L M++FD KRR  D   + D+            E ++ NL+P PG+  +K RKGRG A G G S G+GMRGQ SR G   RPGFEGGQ PLYRR PK+ G+P GPGH++T Y ++  + L +AA    + + +    LL+  ++TK K DL KVV G       LTV AH FT SA  AIEAAGGKC LLSPTTN V+ 
Sbjct:    5 LSVIAALLSF--SASLRASDAYAFVHRSNGLSSVPKSSSCLKMKIFDWKRRTADESLLNDVE---------KTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAA----AGSTVTFDSLLESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVIS 228          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|1210522103|dbj|GAX19156.1| (hypothetical protein FisN_3Lh100 [Fistulifera solaris])

HSP 1 Score: 169.474 bits (428), Expect = 4.653e-48
Identity = 96/202 (47.52%), Postives = 122/202 (60.40%), Query Frame = 0
Query:   45 AGSLTMRLFDHKRR--DMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 242
            +  L M++FD KRR  D   + D+            E ++ NL+P PG+  +K RKGRG A G G S G+GMRGQ SR G   RPGFEGGQ PLYRR PK+ G+P GPGH++T Y ++  + L +AA    + + +    L +  ++TK K DL KVV G       LTV AH FT SA  AIEAAGGKC LLSPTTN V+ 
Sbjct:   40 SSCLKMKIFDWKRRTADESLLNDVE---------KTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAA----AGSTVTFDSLYESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVIS 228          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|546298715|ref|XP_005710602.1| (hypothetical protein CHC_T00012001001 [Chondrus crispus] >gi|507106707|emb|CDF40308.1| hypothetical protein CHC_T00012001001 [Chondrus crispus])

HSP 1 Score: 167.548 bits (423), Expect = 4.621e-47
Identity = 106/214 (49.53%), Postives = 138/214 (64.49%), Query Frame = 0
Query:   49 TMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEA 260
            T +LFD K+R      D+       DEG    ++TNLRP PG+  +K RKGRG++ G GGS G+GMRGQ SR G  VRPGFEGGQTPLYRR PK+ GRPMGPGHK+T YAL+++E LN   +     +++    L    ++TKQK  ++KVVGG+    + LTV AH FT SA  AIE AGG CVL+SPTT + +  E    +E+  + + EEA
Sbjct:   44 TAKLFDWKKRQDATYADLPPE----DEGIF--TLTNLRPAPGSRKRKKRKGRGHSAGQGGSCGFGMRGQKSRSGRGVRPGFEGGQTPLYRRIPKFVGRPMGPGHKKTEYALMKIEFLNGCEE----GSVVTFEGLKAMGIMTKQKRKIYKVVGGEDLTVKNLTVKAHAFTTSAVDAIEGAGGTCVLVSPTTGKDIVFEEEEDEEVATESETEEA 247          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|676389595|ref|XP_009038076.1| (hypothetical protein AURANDRAFT_28033 [Aureococcus anophagefferens] >gi|323451587|gb|EGB07464.1| hypothetical protein AURANDRAFT_28033 [Aureococcus anophagefferens])

HSP 1 Score: 163.696 bits (413), Expect = 6.295e-46
Identity = 96/200 (48.00%), Postives = 125/200 (62.50%), Query Frame = 0
Query:   47 SLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGG---DVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 241
            +L+M+L+D KRR+   +E+       G +   E  V N+R  PG   +K RKGRG + G G + G+GMRGQ SR G   R GFEGGQTPLYRR PK  GRP GPGH    ++L+++  L+         + +D   L+++ ++TK K D+ KVVG    DVPL   LTV AH FT SA + IEAAGGKCVLLS TTNEV+
Sbjct:   35 ALSMKLYDWKRRES--VEE------AGVDAF-EFRVDNIRSAPGATKRKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRAGFEGGQTPLYRRLPKLVGRPTGPGHTNEVFSLIKLGQLST----LEPNSEVDYAALMEKGLVTKAKQDILKVVGSASDDVPLPEGLTVKAHAFTQSAQSKIEAAGGKCVLLSKTTNEVL 221          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|298706539|emb|CBJ29509.1| (Chloroplast 50S ribosomal protein L15 [Ectocarpus siliculosus])

HSP 1 Score: 160.229 bits (404), Expect = 2.001e-44
Identity = 107/239 (44.77%), Postives = 131/239 (54.81%), Query Frame = 0
Query:    8 VALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEME 244
             AL  +     F    +F GQQ    L     A       +TM++FD KRR+    ED +    V D      +V  L+P PG+  +  RKGRG A G G S G+GMRGQ SR G  VR GFEGGQ PLYRR PK  GRPMGPGH + ++ L++++ LN           ++   L     +TK K    KVVGG    T  LTV AHGFT SA  AIEA GGKC LLSPTTNEV+ M+
Sbjct:    8 TALFCVGVANAFFAPTAFTGQQ----LTAGTSAPSRTTTGVTMKIFDWKRRES---EDGL----VLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNG----LDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMD 227          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|219114835|ref|XP_002178213.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409948|gb|EEC49878.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 157.532 bits (397), Expect = 2.953e-44
Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 0
Query:   79 EPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVV--GGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 242
            E ++ NL+P PG+   K RKGRG A G G + G+GMRGQ SR G   R GFEGGQTPLYRR PK+ GR  GPGH +T Y ++  + L +A     S + +    LL+  ++TK K  L KVV   G+  +   LTV AHGFT SA AAIE+AGGKC +LSPTTN+V+E
Sbjct:    2 EFTLDNLKPAPGSRQNKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRSGFEGGQTPLYRRLPKFVGRATGPGHTKTIYNIISTDSLEKAQ----SGSTVSFESLLENGLITKSKFKLHKVVLGKGESAVASNLTVQAHGFTKSAQAAIESAGGKCEVLSPTTNKVLE 165          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|397617711|gb|EJK64574.1| (hypothetical protein THAOC_14683 [Thalassiosira oceanica])

HSP 1 Score: 159.073 bits (401), Expect = 4.128e-44
Identity = 94/213 (44.13%), Postives = 126/213 (59.15%), Query Frame = 0
Query:   36 PSIQAHRAGAGSLTMRLFDHKRR--DMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLN--EAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLT-RPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 241
            PS     +    L+M+L+D KRR  D   + D+            E ++ +++P PG+  +K RKGRG + G G + G+GMRGQ +R G   RPGFEGGQ PLYRR PK+ GRP GPGH++T Y L++++ +N  E        ++I+ G        TK KLD+ KVV G    T + +TV AH FT SA  AIE AGGK VLLS TTNEV+
Sbjct:   25 PSHAVTSSSPSQLSMKLYDWKRRTADESAVNDL----------ETEWTLGSIKPAPGSRKRKQRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFTGRPTGPGHQKTEYNLIKLDDINGCEEGSTVSFESLIETG------ATTKAKLDIHKVVVGREEFTAKGVTVQAHAFTKSAQEAIEGAGGKAVLLSKTTNEVL 221          
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|544216122|ref|XP_005538206.1| (chloroplast ribosomal protein L15 precursor [Cyanidioschyzon merolae strain 10D] >gi|449018768|dbj|BAM82170.1| chloroplast ribosomal protein L15 precursor [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 160.229 bits (404), Expect = 5.136e-44
Identity = 84/165 (50.91%), Postives = 108/165 (65.45%), Query Frame = 0
Query:   81 SVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEM 243
            ++ NL P PG+  +K RKGRG A G GGS GYGMRGQ SR G  +RPGFEGGQ PLYRR PK+ GRP GP H+R  Y  V V+ LN  A+     +++ P  L++   + +  L LFK++G      R LTV AH F++SA   IE AGG+CVLLSPTT + +E+
Sbjct:   92 TLGNLAPAPGSVHRKKRKGRGIAAGQGGSCGYGMRGQKSRSGGSIRPGFEGGQMPLYRRIPKYRGRPPGPSHRRIEYQPVNVKALNTCAEG----SVVTPHVLIETGAIHRTNLKLFKILGDGEITVRNLTVKAHAFSSSAVRKIEEAGGRCVLLSPTTGKDIEL 252          
The following BLAST results are available for this feature:
BLAST of EWM28882.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111314|gb|EWM28882.1|0.000e+0100.00ribosomal protein l15 [Nannochloropsis gaditana][more]
gi|1072234356|gb|OEU19086.1|2.178e-5044.44ribosomal protein L15 [Fragilariopsis cylindrus CC... [more]
gi|1210525559|dbj|GAX15628.1|4.422e-5043.93hypothetical protein FisN_3Hh100 [Fistulifera sola... [more]
gi|1210522103|dbj|GAX19156.1|4.653e-4847.52hypothetical protein FisN_3Lh100 [Fistulifera sola... [more]
gi|546298715|ref|XP_005710602.1|4.621e-4749.53hypothetical protein CHC_T00012001001 [Chondrus cr... [more]
gi|676389595|ref|XP_009038076.1|6.295e-4648.00hypothetical protein AURANDRAFT_28033 [Aureococcus... [more]
gi|298706539|emb|CBJ29509.1|2.001e-4444.77Chloroplast 50S ribosomal protein L15 [Ectocarpus ... [more]
gi|219114835|ref|XP_002178213.1|2.953e-4451.79predicted protein, partial [Phaeodactylum tricornu... [more]
gi|397617711|gb|EJK64574.1|4.128e-4444.13hypothetical protein THAOC_14683 [Thalassiosira oc... [more]
gi|544216122|ref|XP_005538206.1|5.136e-4450.91chloroplast ribosomal protein L15 precursor [Cyani... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1796rna1796Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications