EWM28882.1, cds1792 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|585111314|gb|EWM28882.1| (ribosomal protein l15 [Nannochloropsis gaditana]) HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query: 1 MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA 302
MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA
Sbjct: 1 MGGRRILVALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEAATEAEEAEGKYVDVPRPGGARERIRAEIRREDKEAYARLNNA 302
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|1072234356|gb|OEU19086.1| (ribosomal protein L15 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 175.637 bits (444), Expect = 2.178e-50 Identity = 104/234 (44.44%), Postives = 135/234 (57.69%), Query Frame = 0
Query: 12 VIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGS-LTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFK-VVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 241
V+ A+AG + S S LR S+ AG G +TM+L+D KRRD + D E ++ NLRP PG+ + RKGRG A G G + G+GMRGQ SR G RPGFEGGQTPLYRR PK+ GRPMGPGH + +Y +++++ LN S ++ + L +TK K D K VVG D + +TV AH FT +A AIE AGGKC LL P+T EV+
Sbjct: 8 VLIALAGLVASSDAFSTFMGSSLRTSVPTTNAGNGDGMTMKLYDWKRRDAD-------ESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNV----DSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|1210525559|dbj|GAX15628.1| (hypothetical protein FisN_3Hh100 [Fistulifera solaris]) HSP 1 Score: 174.866 bits (442), Expect = 4.422e-50 Identity = 105/239 (43.93%), Postives = 139/239 (58.16%), Query Frame = 0
Query: 10 LAVIPAVAGFMLSGSFKGQQSQSLLRPS--IQAHRAGAGSLTMRLFDHKRR--DMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 242
L+VI A+ F S S + + + + S + + + L M++FD KRR D + D+ E ++ NL+P PG+ +K RKGRG A G G S G+GMRGQ SR G RPGFEGGQ PLYRR PK+ G+P GPGH++T Y ++ + L +AA + + + LL+ ++TK K DL KVV G LTV AH FT SA AIEAAGGKC LLSPTTN V+
Sbjct: 5 LSVIAALLSF--SASLRASDAYAFVHRSNGLSSVPKSSSCLKMKIFDWKRRTADESLLNDVE---------KTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAA----AGSTVTFDSLLESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVIS 228
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|1210522103|dbj|GAX19156.1| (hypothetical protein FisN_3Lh100 [Fistulifera solaris]) HSP 1 Score: 169.474 bits (428), Expect = 4.653e-48 Identity = 96/202 (47.52%), Postives = 122/202 (60.40%), Query Frame = 0
Query: 45 AGSLTMRLFDHKRR--DMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 242
+ L M++FD KRR D + D+ E ++ NL+P PG+ +K RKGRG A G G S G+GMRGQ SR G RPGFEGGQ PLYRR PK+ G+P GPGH++T Y ++ + L +AA + + + L + ++TK K DL KVV G LTV AH FT SA AIEAAGGKC LLSPTTN V+
Sbjct: 40 SSCLKMKIFDWKRRTADESLLNDVE---------KTEFTLDNLKPAPGSRHRKSRKGRGIAAGQGASCGFGMRGQKSRAGSPTRPGFEGGQIPLYRRLPKFVGKPTGPGHEKTIYNVISTDALEKAA----AGSTVTFDSLYESKIVTKSKFDLHKVVMGKGTPASNLTVQAHAFTKSARQAIEAAGGKCELLSPTTNAVIS 228
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|546298715|ref|XP_005710602.1| (hypothetical protein CHC_T00012001001 [Chondrus crispus] >gi|507106707|emb|CDF40308.1| hypothetical protein CHC_T00012001001 [Chondrus crispus]) HSP 1 Score: 167.548 bits (423), Expect = 4.621e-47 Identity = 106/214 (49.53%), Postives = 138/214 (64.49%), Query Frame = 0
Query: 49 TMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGLNVDEILAQLDKEEA 260
T +LFD K+R D+ DEG ++TNLRP PG+ +K RKGRG++ G GGS G+GMRGQ SR G VRPGFEGGQTPLYRR PK+ GRPMGPGHK+T YAL+++E LN + +++ L ++TKQK ++KVVGG+ + LTV AH FT SA AIE AGG CVL+SPTT + + E +E+ + + EEA
Sbjct: 44 TAKLFDWKKRQDATYADLPPE----DEGIF--TLTNLRPAPGSRKRKKRKGRGHSAGQGGSCGFGMRGQKSRSGRGVRPGFEGGQTPLYRRIPKFVGRPMGPGHKKTEYALMKIEFLNGCEE----GSVVTFEGLKAMGIMTKQKRKIYKVVGGEDLTVKNLTVKAHAFTTSAVDAIEGAGGTCVLVSPTTGKDIVFEEEEDEEVATESETEEA 247
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|676389595|ref|XP_009038076.1| (hypothetical protein AURANDRAFT_28033 [Aureococcus anophagefferens] >gi|323451587|gb|EGB07464.1| hypothetical protein AURANDRAFT_28033 [Aureococcus anophagefferens]) HSP 1 Score: 163.696 bits (413), Expect = 6.295e-46 Identity = 96/200 (48.00%), Postives = 125/200 (62.50%), Query Frame = 0
Query: 47 SLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGG---DVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 241
+L+M+L+D KRR+ +E+ G + E V N+R PG +K RKGRG + G G + G+GMRGQ SR G R GFEGGQTPLYRR PK GRP GPGH ++L+++ L+ + +D L+++ ++TK K D+ KVVG DVPL LTV AH FT SA + IEAAGGKCVLLS TTNEV+
Sbjct: 35 ALSMKLYDWKRRES--VEE------AGVDAF-EFRVDNIRSAPGATKRKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRAGFEGGQTPLYRRLPKLVGRPTGPGHTNEVFSLIKLGQLST----LEPNSEVDYAALMEKGLVTKAKQDILKVVGSASDDVPLPEGLTVKAHAFTQSAQSKIEAAGGKCVLLSKTTNEVL 221
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|298706539|emb|CBJ29509.1| (Chloroplast 50S ribosomal protein L15 [Ectocarpus siliculosus]) HSP 1 Score: 160.229 bits (404), Expect = 2.001e-44 Identity = 107/239 (44.77%), Postives = 131/239 (54.81%), Query Frame = 0
Query: 8 VALAVIPAVAGFMLSGSFKGQQSQSLLRPSIQAHRAGAGSLTMRLFDHKRRDMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEME 244
AL + F +F GQQ L A +TM++FD KRR+ ED + V D +V L+P PG+ + RKGRG A G G S G+GMRGQ SR G VR GFEGGQ PLYRR PK GRPMGPGH + ++ L++++ LN ++ L +TK K KVVGG T LTV AHGFT SA AIEA GGKC LLSPTTNEV+ M+
Sbjct: 8 TALFCVGVANAFFAPTAFTGQQ----LTAGTSAPSRTTTGVTMKIFDWKRRES---EDGL----VLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNG----LDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMD 227
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|219114835|ref|XP_002178213.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409948|gb|EEC49878.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 157.532 bits (397), Expect = 2.953e-44 Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 0
Query: 79 EPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVV--GGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVE 242
E ++ NL+P PG+ K RKGRG A G G + G+GMRGQ SR G R GFEGGQTPLYRR PK+ GR GPGH +T Y ++ + L +A S + + LL+ ++TK K L KVV G+ + LTV AHGFT SA AAIE+AGGKC +LSPTTN+V+E
Sbjct: 2 EFTLDNLKPAPGSRQNKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRSGFEGGQTPLYRRLPKFVGRATGPGHTKTIYNIISTDSLEKAQ----SGSTVSFESLLENGLITKSKFKLHKVVLGKGESAVASNLTVQAHGFTKSAQAAIESAGGKCEVLSPTTNKVLE 165
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|397617711|gb|EJK64574.1| (hypothetical protein THAOC_14683 [Thalassiosira oceanica]) HSP 1 Score: 159.073 bits (401), Expect = 4.128e-44 Identity = 94/213 (44.13%), Postives = 126/213 (59.15%), Query Frame = 0
Query: 36 PSIQAHRAGAGSLTMRLFDHKRR--DMKFIEDIMGHPGVGDEGHKEPSVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLN--EAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLT-RPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVV 241
PS + L+M+L+D KRR D + D+ E ++ +++P PG+ +K RKGRG + G G + G+GMRGQ +R G RPGFEGGQ PLYRR PK+ GRP GPGH++T Y L++++ +N E ++I+ G TK KLD+ KVV G T + +TV AH FT SA AIE AGGK VLLS TTNEV+
Sbjct: 25 PSHAVTSSSPSQLSMKLYDWKRRTADESAVNDL----------ETEWTLGSIKPAPGSRKRKQRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFTGRPTGPGHQKTEYNLIKLDDINGCEEGSTVSFESLIETG------ATTKAKLDIHKVVVGREEFTAKGVTVQAHAFTKSAQEAIEGAGGKAVLLSKTTNEVL 221
BLAST of EWM28882.1 vs. NCBI_GenBank
Match: gi|544216122|ref|XP_005538206.1| (chloroplast ribosomal protein L15 precursor [Cyanidioschyzon merolae strain 10D] >gi|449018768|dbj|BAM82170.1| chloroplast ribosomal protein L15 precursor [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 160.229 bits (404), Expect = 5.136e-44 Identity = 84/165 (50.91%), Postives = 108/165 (65.45%), Query Frame = 0
Query: 81 SVTNLRPFPGNYPKKHRKGRGNAGGGGGSSGYGMRGQNSRGG--VRPGFEGGQTPLYRRTPKWPGRPMGPGHKRTRYALVQVEHLNEAADYFPSRTIIDPGFLLDQCVLTKQKLDLFKVVGGDVPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEM 243
++ NL P PG+ +K RKGRG A G GGS GYGMRGQ SR G +RPGFEGGQ PLYRR PK+ GRP GP H+R Y V V+ LN A+ +++ P L++ + + L LFK++G R LTV AH F++SA IE AGG+CVLLSPTT + +E+
Sbjct: 92 TLGNLAPAPGSVHRKKRKGRGIAAGQGGSCGYGMRGQKSRSGGSIRPGFEGGQMPLYRRIPKYRGRPPGPSHRRIEYQPVNVKALNTCAEG----SVVTPHVLIETGAIHRTNLKLFKILGDGEITVRNLTVKAHAFSSSAVRKIEEAGGRCVLLSPTTGKDIEL 252 The following BLAST results are available for this feature:
BLAST of EWM28882.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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