EWM28874.1, cds1791 (CDS) Nannochloropsis gaditana

Overview
NameEWM28874.1
Unique Namecds1791
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:151908..152762 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28874.1
ProductPUA-like domain protein
Orig transcript idgnl|cribi|Naga_100095g2.10166.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:151908..152762 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_domain
IPR002740EVE_domain
Homology
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|585111306|gb|EWM28874.1| (PUA-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MPPKRKAKSIAGSSEAKTDLPAANSKRKGGTMSICSSPNKDSDNTAPQSRKVHKAAGALSTAPLPPETTSKGSKVSSTRRYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHEKLIMAPKGTGVVREERGEEGKTSSADGEGGKGEKKDEKRLGGKKKKRRTGT 284
            MPPKRKAKSIAGSSEAKTDLPAANSKRKGGTMSICSSPNKDSDNTAPQSRKVHKAAGALSTAPLPPETTSKGSKVSSTRRYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHEKLIMAPKGTGVVREERGEEGKTSSADGEGGKGEKKDEKRLGGKKKKRRTGT
Sbjct:    1 MPPKRKAKSIAGSSEAKTDLPAANSKRKGGTMSICSSPNKDSDNTAPQSRKVHKAAGALSTAPLPPETTSKGSKVSSTRRYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHEKLIMAPKGTGVVREERGEEGKTSSADGEGGKGEKKDEKRLGGKKKKRRTGT 284          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|1004135268|gb|KXZ43333.1| (hypothetical protein GPECTOR_94g655 [Gonium pectorale])

HSP 1 Score: 206.838 bits (525), Expect = 3.234e-61
Identity = 96/152 (63.16%), Postives = 114/152 (75.00%), Query Frame = 0
Query:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFI 231
            RYFLMKSEP+EFS+DDL+A+PN T CWEGVRN QARN+MR  M +GDQAFFYHSSCKVP +VG++EV R AYPDH  +DK SKYYD  S  +AP+WWMVDV L  R    V L  LR E  + G P+A M L+ K SRLSVQPV  E+W+ +
Sbjct:  121 RYFLMKSEPEEFSLDDLSAKPNSTSCWEGVRNAQARNIMR-SMKLGDQAFFYHSSCKVPAVVGLVEVVREAYPDHTAFDKSSKYYDPRSTPDAPKWWMVDVRLVRRAVRPVTLAELRAEGARAGSPVASMVLINK-SRLSVQPVTPEQWERV 270          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|460163433|gb|EMI17679.1| (protein belonging to Uncharacterized protein family UPF0310 [Rhodopirellula maiorica SM1])

HSP 1 Score: 197.978 bits (502), Expect = 6.000e-60
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 0
Query:   69 TSKGSKVSSTRRYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHEKLIMAP 239
            T+K    + T  Y+LMKSEP  FS+DDLA QP+QT CWEGVRNYQARN++RD + VGD+  FYHS+CKVP +VG   VS++ YPD FQ+D+ SKY+D  SD E PRW++VD+ L+++ +  V L  LRE A      L GM LLQKGSRLSVQPV+++E++ I EKL   P
Sbjct:   24 TAKDLFHAMTINYWLMKSEPTTFSIDDLADQPDQTTCWEGVRNYQARNMLRDDIQVGDRVLFYHSACKVPAVVGTAVVSKSGYPDPFQFDRKSKYFDEKSDPENPRWYLVDIKLEKKFDRPVTLAELRERA-----GLKGMVLLQKGSRLSVQPVKKKEFETI-EKLASKP 188          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|494543466|ref|WP_007328178.1| (EVE domain-containing protein [Rhodopirellula baltica] >gi|327539167|gb|EGF25795.1| protein belonging to uncharacterized protein family UPF0310 [Rhodopirellula baltica WH47] >gi|436438729|gb|ELP32254.1| protein belonging to uncharacterized protein family UPF0310 [Rhodopirellula baltica SWK14])

HSP 1 Score: 195.667 bits (496), Expect = 1.983e-59
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 0
Query:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEW 228
            +Y+LMK+EP+ FS+DDLA QP Q  CWEGVRNYQARNL+RD +  GDQ  FYHS+CK P +VG+  VSR  YPDH  +DK S Y+D  S+ ++P W+MVD+ L ++LE  V L  LREEA K   PL  M LLQKGSRLSVQPV ++++
Sbjct:    2 KYWLMKTEPNTFSIDDLAEQPEQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSPLVDMVLLQKGSRLSVQPVTKKQF 150          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|494552619|ref|WP_007332253.1| (EVE domain-containing protein [Rhodopirellula baltica] >gi|32475480|ref|NP_868474.1| hypothetical protein RB8644 [Rhodopirellula baltica SH 1] >gi|32446022|emb|CAD75838.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] >gi|408497660|gb|EKK02180.1| protein belonging to uncharacterized protein family UPF0310 [Rhodopirellula baltica SH28])

HSP 1 Score: 195.282 bits (495), Expect = 2.386e-59
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 0
Query:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEW 228
            +Y+LMK+EP+ FS+DDLA QP Q  CWEGVRNYQARNL+RD +  GDQ  FYHS+CK P +VG+  VSR  YPDH  +DK S Y+D  S+ ++P W+MVD+ L ++LE  V L  LREEA K   PL  M LLQKGSRLSVQPV ++++
Sbjct:    2 KYWLMKTEPNTFSIDDLAEQPEQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSPLVDMVLLQKGSRLSVQPVSKKQF 150          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|750487443|ref|WP_040769314.1| (EVE domain-containing protein [Rhodopirellula maiorica])

HSP 1 Score: 195.282 bits (495), Expect = 2.662e-59
Identity = 93/159 (58.49%), Postives = 119/159 (74.84%), Query Frame = 0
Query:   81 YFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHEKLIMAP 239
            Y+LMKSEP  FS+DDLA QP+QT CWEGVRNYQARN++RD + VGD+  FYHS+CKVP +VG   VS++ YPD FQ+D+ SKY+D  SD E PRW++VD+ L+++ +  V L  LRE A      L GM LLQKGSRLSVQPV+++E++ I EKL   P
Sbjct:    3 YWLMKSEPTTFSIDDLADQPDQTTCWEGVRNYQARNMLRDDIQVGDRVLFYHSACKVPAVVGTAVVSKSGYPDPFQFDRKSKYFDEKSDPENPRWYLVDIKLEKKFDRPVTLAELRERA-----GLKGMVLLQKGSRLSVQPVKKKEFETI-EKLASKP 155          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|495934402|ref|WP_008658981.1| (EVE domain-containing protein [Rhodopirellula europaea] >gi|448884898|gb|EMB15366.1| protein belonging to Uncharacterized protein family UPF0310 [Rhodopirellula europaea 6C])

HSP 1 Score: 193.741 bits (491), Expect = 9.596e-59
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 0
Query:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEW 228
            +Y+LMK+EP  FS+DDL  QP+Q  CWEGVRNYQARNL+RD +  GDQ  FYHS+CK P +VG+  VSR  YPDH  +DK S Y+D  S+ ++P W+MVD+ L ++LE  V L  LREEA K   PL  M LLQKGSRLSVQPV ++++
Sbjct:    2 KYWLMKTEPTTFSIDDLVEQPDQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSPLVDMVLLQKGSRLSVQPVTKKQF 150          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|836667878|ref|WP_047815850.1| (EVE domain-containing protein [Rhodopirellula islandica])

HSP 1 Score: 193.356 bits (490), Expect = 1.707e-58
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 0
Query:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEW 228
            +Y+LMK+EP+ F++DDLA QP+Q  CWEGVRNYQARNL+RD +  GD+  FYHS+CK P +VG+  VSR  YPDH  WDK S Y+D  S  ++P W+MVD+ L+++L+  V L  LREEA + G PL  M LL+KGSRLSVQPV ++++
Sbjct:    2 KYWLMKTEPNTFNIDDLAEQPDQITCWEGVRNYQARNLLRDEIEEGDRVLFYHSACKTPAVVGLATVSRGGYPDHHAWDKKSHYFDPKSTPDSPTWFMVDIQLEKKLDRPVTLAELREEATQAGSPLVDMMLLRKGSRLSVQPVTKKQF 150          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|517546319|ref|WP_018716527.1| (EVE domain-containing protein [Arhodomonas aquaeolei])

HSP 1 Score: 190.66 bits (483), Expect = 1.438e-57
Identity = 91/153 (59.48%), Postives = 108/153 (70.59%), Query Frame = 0
Query:   81 YFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHE 233
            Y+LMKSEPD + +DDLAA+P+QT  W+GVRNYQ RN+MRD M  GD AFFYHS+ KVPGI GIME+    YPDH  WD  S YYD  SD + PRW+MVDV  Q RLE  +PL  L+ E       L+ MAL++KG+RLSV PVRE EW  I E
Sbjct:    3 YWLMKSEPDVYGIDDLAAEPDQTDHWDGVRNYQVRNMMRDRMQPGDLAFFYHSNTKVPGIAGIMEIVSTGYPDHTAWDPESNYYDPKSDPDNPRWYMVDVRFQRRLERLIPLSELKAEP-----ALSEMALVKKGNRLSVMPVREAEWTAILE 150          
BLAST of EWM28874.1 vs. NCBI_GenBank
Match: gi|739393469|ref|WP_037254040.1| (EVE domain-containing protein [Rhodopirellula europaea])

HSP 1 Score: 190.66 bits (483), Expect = 1.692e-57
Identity = 85/149 (57.05%), Postives = 108/149 (72.48%), Query Frame = 0
Query:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEW 228
            +Y+LMK+EP  FS+DDL  QP+Q  CWEGVRNYQARNL+RD +  GDQ  FYHS+CK P +VG+  VSR  YPDH  +DK S Y+D  S+ ++P W+MVD+ L ++LE  V L  LREEA K    L  M LLQKGSRLSVQPV ++++
Sbjct:    2 KYWLMKTEPTTFSIDDLVEQPDQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSALVDMVLLQKGSRLSVQPVTKKQF 150          
The following BLAST results are available for this feature:
BLAST of EWM28874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111306|gb|EWM28874.1|0.000e+0100.00PUA-like domain protein [Nannochloropsis gaditana][more]
gi|1004135268|gb|KXZ43333.1|3.234e-6163.16hypothetical protein GPECTOR_94g655 [Gonium pector... [more]
gi|460163433|gb|EMI17679.1|6.000e-6056.14protein belonging to Uncharacterized protein famil... [more]
gi|494543466|ref|WP_007328178.1|1.983e-5958.39EVE domain-containing protein [Rhodopirellula balt... [more]
gi|494552619|ref|WP_007332253.1|2.386e-5958.39EVE domain-containing protein [Rhodopirellula balt... [more]
gi|750487443|ref|WP_040769314.1|2.662e-5958.49EVE domain-containing protein [Rhodopirellula maio... [more]
gi|495934402|ref|WP_008658981.1|9.596e-5957.72EVE domain-containing protein [Rhodopirellula euro... [more]
gi|836667878|ref|WP_047815850.1|1.707e-5856.38EVE domain-containing protein [Rhodopirellula isla... [more]
gi|517546319|ref|WP_018716527.1|1.438e-5759.48EVE domain-containing protein [Arhodomonas aquaeol... [more]
gi|739393469|ref|WP_037254040.1|1.692e-5757.05EVE domain-containing protein [Rhodopirellula euro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1795rna1795Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications