EWM28896.1, cds1777 (CDS) Nannochloropsis gaditana

Overview
NameEWM28896.1
Unique Namecds1777
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:107855..108109 +
Alignment locationCM002458.1:108345..109013 +
Alignment locationCM002458.1:109183..109230 +
Alignment locationCM002458.1:109772..109780 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28896.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100895g4.9479.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:107855..108109 +
CM002458.1supercontigCM002458.1:108345..109013 +
CM002458.1supercontigCM002458.1:109183..109230 +
CM002458.1supercontigCM002458.1:109772..109780 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001060FCH_dom
Homology
[Close]
BLAST of EWM28896.1 vs. NCBI_GenBank
Match: gi|585111336|gb|EWM28896.1| (hypothetical protein Naga_100895g4 [Nannochloropsis gaditana])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0 
Query:    1 MDASTISSSSPSSFLVSSTASSASSTSSPSSSSPLELSLEFPTLLDNMDVMFQRAHDGAKTCKAFSTFLQQSAVLEEGYGSSIVKVGEAFAGIQESNAPSVVAATAGASASIQALGRQHVGLANTLSQDVCKSLGAYVDQQSAMLRGMIQEVHALVEDLEKEKAAHKKIRDKHKKACKEAEGVLKKGGALSLPPVPPPLSQLPDAIDVAVAAPPSLPSSLPPSLPPSTAADPISGPDHSDATSSPIPPSAPPSVPAVSSSILRLQDRAQEALFDLRAMEKEYQTSKNRMEGKEEAFRRALREHLGRFQVQEEARALFVKQQLQRPP 326
            MDASTISSSSPSSFLVSSTASSASSTSSPSSSSPLELSLEFPTLLDNMDVMFQRAHDGAKTCKAFSTFLQQSAVLEEGYGSSIVKVGEAFAGIQESNAPSVVAATAGASASIQALGRQHVGLANTLSQDVCKSLGAYVDQQSAMLRGMIQEVHALVEDLEKEKAAHKKIRDKHKKACKEAEGVLKKGGALSLPPVPPPLSQLPDAIDVAVAAPPSLPSSLPPSLPPSTAADPISGPDHSDATSSPIPPSAPPSVPAVSSSILRLQDRAQEALFDLRAMEKEYQTSKNRMEGKEEAFRRALREHLGRFQVQEEARALFVKQQLQRPP
Sbjct:    1 MDASTISSSSPSSFLVSSTASSASSTSSPSSSSPLELSLEFPTLLDNMDVMFQRAHDGAKTCKAFSTFLQQSAVLEEGYGSSIVKVGEAFAGIQESNAPSVVAATAGASASIQALGRQHVGLANTLSQDVCKSLGAYVDQQSAMLRGMIQEVHALVEDLEKEKAAHKKIRDKHKKACKEAEGVLKKGGALSLPPVPPPLSQLPDAIDVAVAAPPSLPSSLPPSLPPSTAADPISGPDHSDATSSPIPPSAPPSVPAVSSSILRLQDRAQEALFDLRAMEKEYQTSKNRMEGKEEAFRRALREHLGRFQVQEEARALFVKQQLQRPP 326
[Close]
BLAST of EWM28896.1 vs. NCBI_GenBank
Match: gi|632980563|ref|XP_007907104.1| (PREDICTED: proline-serine-threonine phosphatase-interacting protein 2 [Callorhinchus milii])

HSP 1 Score: 63.5438 bits (153), Expect = 1.049e-7
Identity = 46/150 (30.67%), Postives = 79/150 (52.67%), Query Frame = 0 
Query:   49 DVMFQRAHDGAKTCKAFSTFLQQSAVLEEGYGSSIVKVGEAFAGIQESNAPSVVAATAGASASIQALGRQHVGLANTLSQDVCKSLGAYVDQQSAMLRGMIQEVHALVEDLEKEKAA-HKKIRDKHK---KACK---EAEGVLKKGGALS 191
            D + QR +DG K+CK    F++Q A +EE YG  +V + +   G  E N  ++  A       I+ +G  H+ LA+ L ++V K L  + ++Q    +   ++V  ++E+L K+K+A +KK  D  K   + CK   EAE  + +   L+
Sbjct:   22 DSLIQRMNDGRKSCKELEEFMKQRASIEERYGKDLVSLSKKVCGQNELN--TLKRAFDVFKQQIENVGLSHIQLASNLREEV-KKLEDFREKQ----KDARKKVEHVMENLHKQKSAFYKKTMDSKKTYEQKCKDKDEAEQQMNRNTGLT 164
The following BLAST results are available for this feature:
BLAST of EWM28896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111336|gb|EWM28896.1|0.000e+0100.00hypothetical protein Naga_100895g4 [Nannochloropsi... [more]
gi|632980563|ref|XP_007907104.1|1.049e-730.67PREDICTED: proline-serine-threonine phosphatase-in... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1781rna1781Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications