EWM28906.1, cds1768 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|585111356|gb|EWM28906.1| (hypothetical protein Naga_101190g4 [Nannochloropsis gaditana]) HSP 1 Score: 263.848 bits (673), Expect = 2.025e-89 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR 127
MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR
Sbjct: 1 MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR 127
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|697967138|gb|KGM07847.1| (hypothetical protein LP43_0263 [Methylophaga thiooxydans]) HSP 1 Score: 81.2629 bits (199), Expect = 3.720e-16 Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 0
Query: 12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
L+A DFDGVLC SA E + GW A + W PD IL F VRPV+ETG+ES+LI R L EG TE+++ + + +I++ E + +TF + R +W+
Sbjct: 5 LYALDFDGVLCDSAVETAIAGWKVALQLWSD----MPDHIPAEILERFRQVRPVMETGYESILIVRMLFEG-LDTESLMSAFHHQIEALMIRDALEV--DELKQTFGATRDQWI 111
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1062533630|ref|WP_069294936.1| (HAD family hydrolase [Methylophaga muralis] >gi|1062089809|gb|ODN68283.1| hypothetical protein A9E74_00255 [Methylophaga muralis]) HSP 1 Score: 80.8777 bits (198), Expect = 4.399e-16 Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 0
Query: 12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTAS-----LRETLI-----KEYGEY 108
L+A DFDGVLC SA E ++GW A + WP P++ ILS F VRPV+ETG+E++LI R L+EG S + ++ D+ LRE L K++GEY
Sbjct: 5 LFALDFDGVLCDSALETGLSGWQVASQIWPDMPTQMPEQ----ILSDFRVVRPVMETGYEAILICRLLYEGTPS-DLLIDDFPKQINLILLRENLAVADLKKQFGEY 106
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1028853444|ref|WP_064022187.1| (MULTISPECIES: hypothetical protein [Methylomonas] >gi|1028396114|gb|OAI29348.1| hypothetical protein A1356_04415 [Methylomonas koyamae] >gi|1028473309|gb|ANE56227.1| hypothetical protein AYM39_14245 [Methylomonas sp. DH-1]) HSP 1 Score: 79.7221 bits (195), Expect = 1.499e-15 Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0
Query: 11 LLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
+++A DFDGV+C SA E +TGW AA W A + P P ++ F VRP++ETG+E++L+ R LH GE + E+I Y + L+ E G + F R +W+
Sbjct: 5 IIYALDFDGVICDSALETALTGWKAAATIWSGMAETAP----PELVEQFRAVRPIIETGYEAILVIRLLHAGE-TIESIYAGYGEK-AQALMAEAG-LTVAGLKQLFGDTRDQWI 112
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1191467348|gb|OTE96543.1| (hypothetical protein BCS42_03495 [Crenothrix sp. D3]) HSP 1 Score: 79.337 bits (194), Expect = 1.534e-15 Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0
Query: 11 LLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLR----------ETLIKEYGE 107
+++A DFDGV+C SA E MTGW AA FW + P P ++ F +RP++ETG+E++L R L+ GE + E I DY A ++ + L K++GE
Sbjct: 5 IVYALDFDGVICDSAVETAMTGWKAANTFWQDMPTAVP----PALIDQFRLIRPIIETGYEAILAMRLLYLGE-TIEAIYHDYAAKIQFLMQDAQISIDDLKKQFGE 106
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|495566389|ref|WP_008290968.1| (HAD family hydrolase [Methylophaga thiooxydans] >gi|224463607|gb|EEF79875.1| hypothetical protein MDMS009_1426 [Methylophaga thiooxydans DMS010]) HSP 1 Score: 79.337 bits (194), Expect = 1.581e-15 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 0
Query: 12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
L+A DFDGVLC SA E + GW A + W P++ IL F VRPV+ETG+ES+LI R L EG TE+++ + + +I++ E + +TF + R +W+
Sbjct: 5 LYALDFDGVLCDSAVETAIAGWKVALQIWSD----MPEQIPAEILERFRQVRPVMETGYESILIVRMLFEG-LDTESLMSAFHHQIEALMIRDALEV--DELKQTFGATRDQWI 111
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|494243154|ref|WP_007144204.1| (hypothetical protein [Methylophaga aminisulfidivorans] >gi|333788436|gb|EGL54318.1| expressed protein [Methylophaga aminisulfidivorans MP]) HSP 1 Score: 78.9518 bits (193), Expect = 2.669e-15 Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query: 12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
L+A DFDGV+C SA E + GW A + W PD ++L F VRPV+ETG+E++LI R L+EG S +T++ + + +I++ + + E F S R EW+
Sbjct: 5 LYALDFDGVICDSAIETGIAGWKVALKVWADMPTEMPD----DLLEKFRQVRPVMETGYEAVLIMRLLYEG-MSADTLMSAFHHQIEALMIRD--DMFVDELKEVFGSTRDEWI 111
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1199196996|gb|OUR65748.1| (hypothetical protein A9Q79_01790 [Methylophaga sp. 42_25_T18]) HSP 1 Score: 78.9518 bits (193), Expect = 2.946e-15 Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 0
Query: 12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
L+A DFDGV+C SA E MTGW A+ WP PD I++ F VRPV+ETG+E++LI R L EG E +L ++ + + L ++ E + + F R W+
Sbjct: 6 LYALDFDGVICDSAIETGMTGWKVAKLTWP----EMPDEVPAEIMARFRQVRPVMETGYEAILIMRFLFEGG-DAEQLLSNFNSQITHLLRRD--ELDTDKLKQRFGETRDHWI 112
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1028872372|ref|WP_064039897.1| (hypothetical protein [Methylomonas koyamae] >gi|1028379886|gb|OAI18490.1| hypothetical protein A1507_09010 [Methylomonas koyamae]) HSP 1 Score: 78.5666 bits (192), Expect = 4.324e-15 Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0
Query: 11 LLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
+++A DFDGV+C SA E +TGW AA W A + P P ++ F VRP++ETG+E++L+ R L GE +TE+I Y + L+ E G + F R +W+
Sbjct: 5 IIYALDFDGVICDSALETALTGWKAAATIWSGMAETAP----PELVEQFRAVRPIIETGYEAILVIRLLDAGE-TTESIYAGYGEK-AQALMAEAG-LTVAGLKQLFGDTRDQWI 112
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|504517409|ref|WP_014704511.1| (hypothetical protein [Methylophaga frappieri] >gi|386272178|gb|AFJ03092.1| hypothetical protein Q7C_1951 [Methylophaga frappieri]) HSP 1 Score: 78.5666 bits (192), Expect = 4.510e-15 Identity = 42/114 (36.84%), Postives = 71/114 (62.28%), Query Frame = 0
Query: 12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
L A DFDGV+C SA E ++GW A + WP E + +P +L++F VRPV+ETG+ES+LI RAL +G + +T++ ++ ++ + ++++Y + P F VR +W+
Sbjct: 9 LIALDFDGVICDSAVETALSGWQVAHQLWP-ELPATLSKP---LLAAFRQVRPVMETGFESILILRALVDG-VAVQTLINSFSNNM-DRVMQQY-QLSPSLLKNQFAEVRDDWI 115 The following BLAST results are available for this feature:
BLAST of EWM28906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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