EWM28906.1, cds1768 (CDS) Nannochloropsis gaditana

Overview
NameEWM28906.1
Unique Namecds1768
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:83898..84046 +
Alignment locationCM002458.1:84159..84291 +
Alignment locationCM002458.1:84469..84570 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28906.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101190g4.5762.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:83898..84046 +
CM002458.1supercontigCM002458.1:84159..84291 +
CM002458.1supercontigCM002458.1:84469..84570 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|585111356|gb|EWM28906.1| (hypothetical protein Naga_101190g4 [Nannochloropsis gaditana])

HSP 1 Score: 263.848 bits (673), Expect = 2.025e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR 127
            MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR
Sbjct:    1 MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR 127          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|697967138|gb|KGM07847.1| (hypothetical protein LP43_0263 [Methylophaga thiooxydans])

HSP 1 Score: 81.2629 bits (199), Expect = 3.720e-16
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 0
Query:   12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            L+A DFDGVLC SA E  + GW  A + W       PD     IL  F  VRPV+ETG+ES+LI R L EG   TE+++  +   +   +I++  E   +   +TF + R +W+
Sbjct:    5 LYALDFDGVLCDSAVETAIAGWKVALQLWSD----MPDHIPAEILERFRQVRPVMETGYESILIVRMLFEG-LDTESLMSAFHHQIEALMIRDALEV--DELKQTFGATRDQWI 111          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1062533630|ref|WP_069294936.1| (HAD family hydrolase [Methylophaga muralis] >gi|1062089809|gb|ODN68283.1| hypothetical protein A9E74_00255 [Methylophaga muralis])

HSP 1 Score: 80.8777 bits (198), Expect = 4.399e-16
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 0
Query:   12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTAS-----LRETLI-----KEYGEY 108
            L+A DFDGVLC SA E  ++GW  A + WP      P++    ILS F  VRPV+ETG+E++LI R L+EG  S + ++ D+        LRE L      K++GEY
Sbjct:    5 LFALDFDGVLCDSALETGLSGWQVASQIWPDMPTQMPEQ----ILSDFRVVRPVMETGYEAILICRLLYEGTPS-DLLIDDFPKQINLILLRENLAVADLKKQFGEY 106          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1028853444|ref|WP_064022187.1| (MULTISPECIES: hypothetical protein [Methylomonas] >gi|1028396114|gb|OAI29348.1| hypothetical protein A1356_04415 [Methylomonas koyamae] >gi|1028473309|gb|ANE56227.1| hypothetical protein AYM39_14245 [Methylomonas sp. DH-1])

HSP 1 Score: 79.7221 bits (195), Expect = 1.499e-15
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0
Query:   11 LLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            +++A DFDGV+C SA E  +TGW AA   W   A + P    P ++  F  VRP++ETG+E++L+ R LH GE + E+I   Y     + L+ E G        + F   R +W+
Sbjct:    5 IIYALDFDGVICDSALETALTGWKAAATIWSGMAETAP----PELVEQFRAVRPIIETGYEAILVIRLLHAGE-TIESIYAGYGEK-AQALMAEAG-LTVAGLKQLFGDTRDQWI 112          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1191467348|gb|OTE96543.1| (hypothetical protein BCS42_03495 [Crenothrix sp. D3])

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-15
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0
Query:   11 LLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLR----------ETLIKEYGE 107
            +++A DFDGV+C SA E  MTGW AA  FW     + P    P ++  F  +RP++ETG+E++L  R L+ GE + E I  DY A ++          + L K++GE
Sbjct:    5 IVYALDFDGVICDSAVETAMTGWKAANTFWQDMPTAVP----PALIDQFRLIRPIIETGYEAILAMRLLYLGE-TIEAIYHDYAAKIQFLMQDAQISIDDLKKQFGE 106          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|495566389|ref|WP_008290968.1| (HAD family hydrolase [Methylophaga thiooxydans] >gi|224463607|gb|EEF79875.1| hypothetical protein MDMS009_1426 [Methylophaga thiooxydans DMS010])

HSP 1 Score: 79.337 bits (194), Expect = 1.581e-15
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            L+A DFDGVLC SA E  + GW  A + W       P++    IL  F  VRPV+ETG+ES+LI R L EG   TE+++  +   +   +I++  E   +   +TF + R +W+
Sbjct:    5 LYALDFDGVLCDSAVETAIAGWKVALQIWSD----MPEQIPAEILERFRQVRPVMETGYESILIVRMLFEG-LDTESLMSAFHHQIEALMIRDALEV--DELKQTFGATRDQWI 111          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|494243154|ref|WP_007144204.1| (hypothetical protein [Methylophaga aminisulfidivorans] >gi|333788436|gb|EGL54318.1| expressed protein [Methylophaga aminisulfidivorans MP])

HSP 1 Score: 78.9518 bits (193), Expect = 2.669e-15
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            L+A DFDGV+C SA E  + GW  A + W       PD    ++L  F  VRPV+ETG+E++LI R L+EG  S +T++  +   +   +I++  +   +   E F S R EW+
Sbjct:    5 LYALDFDGVICDSAIETGIAGWKVALKVWADMPTEMPD----DLLEKFRQVRPVMETGYEAVLIMRLLYEG-MSADTLMSAFHHQIEALMIRD--DMFVDELKEVFGSTRDEWI 111          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1199196996|gb|OUR65748.1| (hypothetical protein A9Q79_01790 [Methylophaga sp. 42_25_T18])

HSP 1 Score: 78.9518 bits (193), Expect = 2.946e-15
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 0
Query:   12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            L+A DFDGV+C SA E  MTGW  A+  WP      PD     I++ F  VRPV+ETG+E++LI R L EG    E +L ++ + +   L ++  E   +   + F   R  W+
Sbjct:    6 LYALDFDGVICDSAIETGMTGWKVAKLTWP----EMPDEVPAEIMARFRQVRPVMETGYEAILIMRFLFEGG-DAEQLLSNFNSQITHLLRRD--ELDTDKLKQRFGETRDHWI 112          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|1028872372|ref|WP_064039897.1| (hypothetical protein [Methylomonas koyamae] >gi|1028379886|gb|OAI18490.1| hypothetical protein A1507_09010 [Methylomonas koyamae])

HSP 1 Score: 78.5666 bits (192), Expect = 4.324e-15
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0
Query:   11 LLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            +++A DFDGV+C SA E  +TGW AA   W   A + P    P ++  F  VRP++ETG+E++L+ R L  GE +TE+I   Y     + L+ E G        + F   R +W+
Sbjct:    5 IIYALDFDGVICDSALETALTGWKAAATIWSGMAETAP----PELVEQFRAVRPIIETGYEAILVIRLLDAGE-TTESIYAGYGEK-AQALMAEAG-LTVAGLKQLFGDTRDQWI 112          
BLAST of EWM28906.1 vs. NCBI_GenBank
Match: gi|504517409|ref|WP_014704511.1| (hypothetical protein [Methylophaga frappieri] >gi|386272178|gb|AFJ03092.1| hypothetical protein Q7C_1951 [Methylophaga frappieri])

HSP 1 Score: 78.5666 bits (192), Expect = 4.510e-15
Identity = 42/114 (36.84%), Postives = 71/114 (62.28%), Query Frame = 0
Query:   12 LWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWM 125
            L A DFDGV+C SA E  ++GW  A + WP E  +   +P   +L++F  VRPV+ETG+ES+LI RAL +G  + +T++  ++ ++ + ++++Y +  P      F  VR +W+
Sbjct:    9 LIALDFDGVICDSAVETALSGWQVAHQLWP-ELPATLSKP---LLAAFRQVRPVMETGFESILILRALVDG-VAVQTLINSFSNNM-DRVMQQY-QLSPSLLKNQFAEVRDDWI 115          
The following BLAST results are available for this feature:
BLAST of EWM28906.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111356|gb|EWM28906.1|2.025e-89100.00hypothetical protein Naga_101190g4 [Nannochloropsi... [more]
gi|697967138|gb|KGM07847.1|3.720e-1638.60hypothetical protein LP43_0263 [Methylophaga thioo... [more]
gi|1062533630|ref|WP_069294936.1|4.399e-1642.99HAD family hydrolase [Methylophaga muralis] >gi|10... [more]
gi|1028853444|ref|WP_064022187.1|1.499e-1536.52MULTISPECIES: hypothetical protein [Methylomonas] ... [more]
gi|1191467348|gb|OTE96543.1|1.534e-1538.32hypothetical protein BCS42_03495 [Crenothrix sp. D... [more]
gi|495566389|ref|WP_008290968.1|1.581e-1537.72HAD family hydrolase [Methylophaga thiooxydans] >g... [more]
gi|494243154|ref|WP_007144204.1|2.669e-1536.84hypothetical protein [Methylophaga aminisulfidivor... [more]
gi|1199196996|gb|OUR65748.1|2.946e-1537.72hypothetical protein A9Q79_01790 [Methylophaga sp.... [more]
gi|1028872372|ref|WP_064039897.1|4.324e-1536.52hypothetical protein [Methylomonas koyamae] >gi|10... [more]
gi|504517409|ref|WP_014704511.1|4.510e-1536.84hypothetical protein [Methylophaga frappieri] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1772rna1772Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications