EWM28912.1, cds1761 (CDS) Nannochloropsis gaditana

Overview
NameEWM28912.1
Unique Namecds1761
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:67718..67758 -
Alignment locationCM002458.1:67023..67359 -
Alignment locationCM002458.1:66801..66914 -
Alignment locationCM002458.1:66506..66623 -
Alignment locationCM002458.1:66130..66249 -
Alignment locationCM002458.1:65817..65962 -
Alignment locationCM002458.1:65497..65621 -

Link to JBrowse

Properties
Property NameValue
Start range65497
Start range.
Protein idEWM28912.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100869g1.5476.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:67718..67758 -
CM002458.1supercontigCM002458.1:67023..67359 -
CM002458.1supercontigCM002458.1:66801..66914 -
CM002458.1supercontigCM002458.1:66506..66623 -
CM002458.1supercontigCM002458.1:66130..66249 -
CM002458.1supercontigCM002458.1:65817..65962 -
CM002458.1supercontigCM002458.1:65497..65621 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025975Polysacc_lyase
Homology
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|585111372|gb|EWM28912.1| (hypothetical protein Naga_100869g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 MTAISSQITKACTKDTSIPLAVQAGRGMAASLLESRTSVPGPRPRSRNKYVVLFLLATLVTSHALPTQTLTAAWDTVASFVSSPALPSTRPTSTLSQEKRDPSTTISRPSASVPMPDMDPPVDSIEEQIALHGRPLPASTFVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDGFVNASVETGGLETRQTQVLTPLGG 334
            MTAISSQITKACTKDTSIPLAVQAGRGMAASLLESRTSVPGPRPRSRNKYVVLFLLATLVTSHALPTQTLTAAWDTVASFVSSPALPSTRPTSTLSQEKRDPSTTISRPSASVPMPDMDPPVDSIEEQIALHGRPLPASTFVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDGFVNASVETGGLETRQTQVLTPLGG
Sbjct:    1 MTAISSQITKACTKDTSIPLAVQAGRGMAASLLESRTSVPGPRPRSRNKYVVLFLLATLVTSHALPTQTLTAAWDTVASFVSSPALPSTRPTSTLSQEKRDPSTTISRPSASVPMPDMDPPVDSIEEQIALHGRPLPASTFVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDGFVNASVETGGLETRQTQVLTPLGG 334          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|1088524256|gb|OHD53794.1| (hypothetical protein A2Y33_02765 [Spirochaetes bacterium GWF1_51_8])

HSP 1 Score: 105.145 bits (261), Expect = 8.216e-23
Identity = 64/178 (35.96%), Postives = 92/178 (51.69%), Query Frame = 0
Query:  141 FVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGT-WQYGPARVEKGEWIDILFHIGWSTGQDGFVNASVE 317
            FV  FEDG  G   LE  +   I +V++PVRTG  +V+  + PG     GNR E+ +   D  G E +Y WS  +   Y         WQI+ QWHDQPD  A +SW +FP ++  ++   +NY  N    + + + +   T W+YG   V  G+W D+  H+ WS   DGFV A + 
Sbjct:   33 FVSDFEDGTTGVWGLEQGRPGLIAVVTNPVRTGTYAVKFTILPGVTWGSGNRTEMKYFNIDPYGEEVYYGWSCMLAPGYTD----NGLWQIIGQWHDQPDPFADESWSSFPKNSPPLS---INYTSNRVYLVVIHSGIKNKTMWEYG-VPVGYGQWFDVAVHVKWSMLSDGFVEAWIN 202          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|1088020430|gb|OGY92001.1| (hypothetical protein A3B31_03345 [Candidatus Komeilibacteria bacterium RIFCSPLOWO2_01_FULL_53_11])

HSP 1 Score: 101.679 bits (252), Expect = 6.234e-21
Identity = 70/197 (35.53%), Postives = 102/197 (51.78%), Query Frame = 0
Query:  145 FEDGFE------GWTSL--EGAQE----DSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNR------AEI-----------THNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDGFV 312
            F +GFE      GWTSL   GA+     DSI +V+ PVR G  ++++ VR GD++  G+R      AE+           T   E   GTE WYAWS+ IP DY         WQI+ QWHDQP+   G+S   + P    I+++  +    +S     G     G      A +++G+WI+++FHIG+S G+DGF+
Sbjct:   85 FHEGFENGALSPGWTSLALHGAKRIEDSDSIQIVTDPVRKGTHALKVTVRDGDWVYFGDRLNDKERAELIRQNSCRQGTCTFGNEGREGTELWYAWSILIPEDY-QYDRVGHDWQIMGQWHDQPE--PGESPSGYSP---PISVHYRSTGGQSSFVFTYGLRQTGGPITEVEAPIKRGKWINLMFHIGFSQGKDGFL 275          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|1088523736|gb|OHD53308.1| (hypothetical protein A2014_06180 [Spirochaetes bacterium GWF1_49_6])

HSP 1 Score: 89.7373 bits (221), Expect = 2.989e-17
Identity = 61/178 (34.27%), Postives = 88/178 (49.44%), Query Frame = 0
Query:  141 FVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIAL-YLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDGFVNASVE 317
            FV  FEDG  G  +LE      I + S+ VRTGN +V+  + P      GNR E+ +   D    E +Y WS  +   Y        +WQI+ QWHDQPD  +  SW +FP ++  I++ Y+ N      +  G+ + +    W+ G A V  G W D++ H+ WS   DGFV   V 
Sbjct:   31 FVSGFEDGTTGVWNLEQGLPGLIEVQSNLVRTGNYAVKFTILPNVTWHTGNRTEMAYFNMDPYVEEVYYGWSCMLAPGYTD----NGKWQIIGQWHDQPDPFSNDSWSSFPRNSPPISINYISNKVYLNILYSGIQSRI---MWENG-ATVSYGVWFDVVVHVKWSMYGDGFVEGWVN 200          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|653184953|ref|WP_027421373.1| (hypothetical protein [Crocinitomix catalasitica])

HSP 1 Score: 82.0333 bits (201), Expect = 2.780e-14
Identity = 61/207 (29.47%), Postives = 88/207 (42.51%), Query Frame = 0
Query:  135 PLPASTFVGSFEDGFEGWTSLEGAQE----DSIVLVSSPVRTGNQSVRIRVRPGDYIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTV----ADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSS--IALYLLNYPENTSIGLGVGTNLPKGTWQYG---------------------PARVEKGEWIDILFHIGWSTGQDG 310
            PL    F   FE   E W +  G  E    D +++ +     G QS +  + P   +  GNRAE+T + +   G + WY +S YIP DY  V    A+    WQ+L QWH QP  D G+ W  +   N+S  I +Y  N+ + T I      + P+ T  YG                        + KGEW  + F+I W+    G
Sbjct:   30 PLQDINF--GFETVLEDWVAYGGGGERNDPDDVMISTDTKIEGEQSCKFTISPESIVAGGNRAELTFDQKAIEGDDTWYEYSFYIPVDYEDVDLRDAEDRVNWQVLGQWHHQPVFDDGEDWIDYTGKNASPPIGIY-YNHFDTTDIHYKNILSDPEATSVYGFNPDWHDVSTISIVYGGKSIAIREITKGEWHRLKFNILWAENNSG 233          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|1213732004|gb|OWY64767.1| (hypothetical protein B7486_45510 [cyanobacterium TDX16])

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-14
Identity = 57/174 (32.76%), Postives = 91/174 (52.30%), Query Frame = 0
Query:  140 TFVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGD-YIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSI--ALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDG 310
             F+  FE G+  W + E   E S  LV+SPVR G Q+V+  ++  D  I    RAE+    E  P +E WY +S+++P DY    DP+ +  I+ QWHD PD + G++W + P  + S     ++LN   ++       T +P+G         + G+W D +FH+ WS+  +G
Sbjct:   46 VFLSDFESGYSEWGT-EFHYEYSAQLVNSPVRAGKQAVKFLLKKEDTRIDGVKRAELRLG-EVPPDSEIWYGFSVFLPSDYQ--QDPSSE--IIAQWHDLPDKNLGETWKS-PALSLSTKDGRFILNRKWDSK----RVTVVPEGKETIDLGLYQTGKWTDFVFHVKWSSNSNG 208          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|504965710|ref|WP_015152812.1| (hypothetical protein [Chroococcidiopsis thermalis] >gi|428007698|gb|AFY86261.1| hypothetical protein Chro_0715 [Chroococcidiopsis thermalis PCC 7203])

HSP 1 Score: 79.337 bits (194), Expect = 2.385e-13
Identity = 54/174 (31.03%), Postives = 91/174 (52.30%), Query Frame = 0
Query:  140 TFVGSFEDGFEGWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGDYIQHG-NRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSI--ALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWSTGQDG 310
             F+  FE G+  W + E     S  +V+SP+R GNQ+++  ++  D   +G  RAE+    E  P +E WY +S+++P DY    DP+   +I+ QWHD PD + G+ W + P  + S     ++LN   ++       T +P+G         + G+W D +F + WS+G +G
Sbjct:   46 VFLSDFESGYSEWGT-ELCCNYSAEIVNSPIRAGNQAIKFTLKKEDARLYGVKRAELKLG-EVPPDSEIWYGFSVFLPSDYQ--QDPSS--EIIAQWHDLPDKNLGEKWKS-PALSLSTKDGKFILNRKWDSK----RVTVVPEGKEVVDLGLYQTGKWTDFVFRVKWSSGSNG 208          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|505161822|ref|WP_015348924.1| (lipoprotein [Myxococcus stipitatus] >gi|441487968|gb|AGC44663.1| putative lipoprotein [Myxococcus stipitatus DSM 14675])

HSP 1 Score: 77.411 bits (189), Expect = 3.924e-12
Identity = 56/176 (31.82%), Postives = 82/176 (46.59%), Query Frame = 0
Query:  141 FVGSFEDGFEG-WTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGD--YIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWS-TGQDGFV 312
            +VG FE G    WT  +    D + +VSSP R G  S++  VR GD      GNR E+     ++ G+E +Y WS      +P      + WQ+  QWH   D DAG S    PP    +  Y+        + L +G N     W+     + +G+W+D +FH+ WS   + GFV
Sbjct:  195 WVGDFESGDRNQWTRAQMVSADRLAVVSSPRRQGGYSLKATVRHGDDPINSSGNRNELVRMTREATGSEYYYRWSTMFDSTFPNA----KTWQLFTQWHQ--DADAGGS----PP----VEFYVY----GDEVRLNIGGNPGTIVWR---TPLVRGKWMDFIFHVRWSPDAKVGFV 349          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|819029804|ref|WP_046713141.1| (carbohydrate-binding protein [Myxococcus fulvus] >gi|817711910|gb|AKF81111.1| carbohydrate-binding protein [Myxococcus fulvus 124B02] >gi|1095409473|emb|SEU32887.1| F5/8 type C domain-containing protein [Myxococcus fulvus])

HSP 1 Score: 77.0258 bits (188), Expect = 5.262e-12
Identity = 54/181 (29.83%), Postives = 81/181 (44.75%), Query Frame = 0
Query:  141 FVGSFEDGFEG-WTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGD--YIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLGVGTNLPKGTWQYGPARVEKGEWIDILFHIGWST-GQDGFVNASVE 317
            +VG FE G    WT  +    D + LVSSP R G  +++  V+ GD      GNR E+    ++  G+E +Y WS      +P V      WQ+  QWH + D   G      PP    +  Y+        + L +G N     W+   A + +  W+D +FH+ WS   + GFV   V+
Sbjct:  193 WVGDFETGDRTQWTRAQMVSSDRLALVSSPKRQGGYALKATVKKGDDPINSSGNRNELVRMTKEPSGSEYYYRWSTMFDSTFPNV----NTWQLFTQWHQESDTVGGS-----PP----VEFYVY----GNEVRLNIGGNPGTIVWR---APLVRARWMDFIFHVRWSADAKVGFVELYVD 353          
BLAST of EWM28912.1 vs. NCBI_GenBank
Match: gi|1113622261|gb|OJY81213.1| (hypothetical protein BGP14_08395 [Sphingobacteriales bacterium 44-15])

HSP 1 Score: 75.0998 bits (183), Expect = 5.835e-12
Identity = 57/182 (31.32%), Postives = 82/182 (45.05%), Query Frame = 0
Query:  142 VGSFEDGFE------GWTSLEGAQEDSIVLVSSPVRTGNQSVRIRVRPGD-YIQHGNRAEITHNLEDSPGTEGWYAWSLYIPRDYPTVADPTRQWQILCQWHDQPDLDAGQSWDAFPPHNSSIALYLLNYPENTSIGLG---VGTNLP-KGTWQYGPARVEKGEWIDILFHIGWSTGQDGFV 312
            +    D FE       W  +E     SI    S  ++GN S+R  +R  D  + +G RAEI    E SP  E WY +S ++P +Y   + P    +IL QWH+ PD D G+ W + PP    ++L+  N      I      V TN    G         E G W + +FH+ +S  +DG V
Sbjct:   24 INKLSDSFEEENFITNWGGIEKCCAYSIQRSDSVAKSGNYSLRFELRKDDSLVANGKRAEIKLKAEASPNVERWYRFSYFLPDNYKNDSIP----EILAQWHEIPDWDLGEDWRS-PP----LSLFTQNGQWKFLIMWATDKVNTNKTISGRKMIDLGEYETGRWTEWIFHLYFSYKEDGLV 196          
The following BLAST results are available for this feature:
BLAST of EWM28912.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111372|gb|EWM28912.1|0.000e+0100.00hypothetical protein Naga_100869g1, partial [Nanno... [more]
gi|1088524256|gb|OHD53794.1|8.216e-2335.96hypothetical protein A2Y33_02765 [Spirochaetes bac... [more]
gi|1088020430|gb|OGY92001.1|6.234e-2135.53hypothetical protein A3B31_03345 [Candidatus Komei... [more]
gi|1088523736|gb|OHD53308.1|2.989e-1734.27hypothetical protein A2014_06180 [Spirochaetes bac... [more]
gi|653184953|ref|WP_027421373.1|2.780e-1429.47hypothetical protein [Crocinitomix catalasitica][more]
gi|1213732004|gb|OWY64767.1|6.706e-1432.76hypothetical protein B7486_45510 [cyanobacterium T... [more]
gi|504965710|ref|WP_015152812.1|2.385e-1331.03hypothetical protein [Chroococcidiopsis thermalis]... [more]
gi|505161822|ref|WP_015348924.1|3.924e-1231.82lipoprotein [Myxococcus stipitatus] >gi|441487968|... [more]
gi|819029804|ref|WP_046713141.1|5.262e-1229.83carbohydrate-binding protein [Myxococcus fulvus] >... [more]
gi|1113622261|gb|OJY81213.1|5.835e-1231.32hypothetical protein BGP14_08395 [Sphingobacterial... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1765rna1765Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications