EWM28935.1, cds1738 (CDS) Nannochloropsis gaditana

Overview
NameEWM28935.1
Unique Namecds1738
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:7818..9162 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28935.1
Productprotein kinase and ribonuclease
Partialtrue
Orig transcript idgnl|cribi|Naga_100511g1.222.mrna
GbkeyCDS
End range.
End range9162
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:7818..9162 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011047Quinonprotein_ADH-like_supfam
IPR027295Quinonprotein_ADH-like_fam
IPR018391PQQ_beta_propeller_repeat
Homology
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|585111402|gb|EWM28935.1| (protein kinase and ribonuclease, partial [Nannochloropsis gaditana])

HSP 1 Score: 867.07 bits (2239), Expect = 0.000e+0
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0
Query:    1 MMITPLENSFSNPGSARRVAQHAAHRPQGRRKRRSGPRLGIGRLTLCFLLFLPGLLLVLASADFVSGDDSNARAPDPSALPVMHEDAPDSPPFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVDSAGGVAWSFDSGAPLVTSYQGYDHEQPSSAPSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLFPSGPLPASAFSSSRGGGGEEASPPAPGSSGPSSGWSTRKLLSFAPDSKGGARQRLGPSTAALDWEGHRQGGLLTPTQAAALDVLGPGPGWGGAGPLVATPEGGVHRRDPGSGEARLLVALGSAPVTAFVVAPRGGGP 448
            MMITPLENSFSNPGSARRVAQHAAHRPQGRRKRRSGPRLGIGRLTLCFLLFLPGLLLVLASADFVSGDDSNARAPDPSALPVMHEDAPDSPPFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVDSAGGVAWSFDSGAPLVTSYQGYDHEQPSSAPSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLFPSGPLPASAFSSSRGGGGEEASPPAPGSSGPSSGWSTRKLLSFAPDSKGGARQRLGPSTAALDWEGHRQGGLLTPTQAAALDVLGPGPGWGGAGPLVATPEGGVHRRDPGSGEARLLVALGSAPVTAFVVAPRGGGP
Sbjct:    1 MMITPLENSFSNPGSARRVAQHAAHRPQGRRKRRSGPRLGIGRLTLCFLLFLPGLLLVLASADFVSGDDSNARAPDPSALPVMHEDAPDSPPFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVDSAGGVAWSFDSGAPLVTSYQGYDHEQPSSAPSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLFPSGPLPASAFSSSRGGGGEEASPPAPGSSGPSSGWSTRKLLSFAPDSKGGARQRLGPSTAALDWEGHRQGGLLTPTQAAALDVLGPGPGWGGAGPLVATPEGGVHRRDPGSGEARLLVALGSAPVTAFVVAPRGGGP 448          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|298712889|emb|CBJ33405.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 97.8265 bits (242), Expect = 7.070e-18
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 0
Query:   98 PPPRASTDQPRSDDEA---LLIVGTVDGWVHAVD-SAGGVAWSFDSGAPLVTSYQGYDHEQPSSAPSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPL 310
            P   A+  + + DD A   +L+   ++  VHA+D S GG+ WSFD+G PLV SYQ    + P +         LIP +DGS+LVHT  +G++R  L A  LV++ PFL   G   YTG++ S    +D   G V Q  SG +A+ +    + RL                      +R      ++W+GR ++ +RA D  +GQE WNLT+ E   L
Sbjct:   74 PSAAAAGGENQGDDAAASSVLLSSEIE--VHALDPSTGGLRWSFDTGEPLVKSYQ----QLPGTLDEK---KWLIPTLDGSILVHTT-QGLRRPGLKARLLVEQTPFLDPKG-VFYTGSKVSRIFGVDARTGEVRQVLSGDTADSLES--NRRL---------------------LARSGSDDDVIWIGRNDYTIRAFDVPTGQEEWNLTIGEFVSL 256          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|971519522|dbj|GAQ78686.1| (serine/threonine-protein kinase [Klebsormidium nitens])

HSP 1 Score: 94.3597 bits (233), Expect = 5.725e-17
Identity = 67/243 (27.57%), Postives = 121/243 (49.79%), Query Frame = 0
Query:  112 EALLIVGTVDGWVHAVDS-AGGVAWSFDSGAPLVTSYQGYDHEQPSS-----------APSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRF---------------SGPSAEKIAHMIDPRLHTPTLAPAPSPPS---ASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPL-------FPSGPLP 317
            E+ L+V  +DG +HA+D+  G + WSF SG PLV++ + ++  Q +                    ++ PG DG+L  +  G G+Q+LP+TA +LV  +P +  DG  +  GAR S   M+D  +G ++++F               + P   K+   +D  ++         P     A+   +  PS  + + + L++ R ++ ++++D++SG E WNL++ EL+ L       FP+G LP
Sbjct:   67 ESTLLVAVLDGSLHALDADTGELKWSFSSGPPLVSASRRHNAVQRADEDRLGEPAESEKVEEEEEGMVFPGADGALYAYRRGHGVQKLPITARELVQASPSMTHDG-GIVVGARQSTVFMVDAASGKLLKKFDASTGTFEAVDGGDLTAPDDLKVGE-VDECIYVGEQEELEQPDHADRAAEVAAEGPSGMSCQHRPLFVVRTDYNVKSMDAVSGLERWNLSMGELSTLYNPAAWRFPTGSLP 307          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|255077605|ref|XP_002502437.1| (Endoribonuclease/protein kinase [Micromonas commoda] >gi|226517702|gb|ACO63695.1| Endoribonuclease/protein kinase [Micromonas commoda])

HSP 1 Score: 82.4185 bits (202), Expect = 4.991e-13
Identity = 66/213 (30.99%), Postives = 98/213 (46.01%), Query Frame = 0
Query:  115 LIVGTVDGWVHAVD-SAGGVAWSFDSGAPLVTSYQGYDHEQPSSAPSA--------PPFPVLIPGVDGSLLVHTPGKG--------IQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPL 310
            L+V  +DG V AVD S+G   W+F SG PLV +     H   S  P             P + PG+DGSL  +  G G        + RLP+TA QLV+ +P +  DG  +  G R S    +D   G +++ F            D        +P       +  P+P+        +  ++GR E+ +R+VDS +G+E WN+T  E+TPL
Sbjct:   50 LLVSLLDGTVRAVDRSSGETLWTFSSGGPLVQA-----HRSVSDGPDGGGGVAIRGRTNPTVFPGIDGSLYAYGGGHGSGSGGTGEVSRLPVTARQLVEASPSVTRDG-GVVMGTRRSVVFAVDKRTGELLRSFDTDGTVVHGGNDDTGFFLSNESP-------TGDPTPNDVND----EAFYIGRTEYVVRSVDSSTGRERWNVTYGEVTPL 245          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|1050631198|ref|XP_017638534.1| (PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b-like [Gossypium arboreum])

HSP 1 Score: 81.6481 bits (200), Expect = 8.937e-13
Identity = 64/229 (27.95%), Postives = 103/229 (44.98%), Query Frame = 0
Query:   90 SPPFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVDSAG-GVAWSFDSGAPLVTSYQGY-DHEQPSSAPSAPPFPVLIP-GVDGSLLVHTPGKG-IQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSG---PSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLF 311
            S  F PP PP           D+ L +V T+DG +H VD     V WSF SG P+ +SYQ + D +      S P   + +  G D  L VH+   G +++L L+A + V R P++A DG  +  G + +   ++D ++G +VQ +     PS       +D +              A     P  S   K  Q +++ R ++ L+     S + LWN+  S++   F
Sbjct:   33 SNRFLPPRPP-----------DDGLAVVVTLDGTMHLVDRVSRKVHWSFASGRPIYSSYQAFLDQDNDKLNTSGPNSDLYVDCGDDLQLYVHSRSHGKLKKLELSAEEYVRRTPYIAEDG-GITLGVKKTSIYLVDANSGRIVQTYRSDDPPST------LDIQNDAGETVRVTKDADALVESGPFNSTTVK--QFVYIMRTDYVLQYYSPNSAEVLWNVAFSKIDAEF 241          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|728812116|gb|KHG00664.1| (Serine/threonine-protein kinase/endoribonuclease IRE1 [Gossypium arboreum])

HSP 1 Score: 81.6481 bits (200), Expect = 9.017e-13
Identity = 64/229 (27.95%), Postives = 103/229 (44.98%), Query Frame = 0
Query:   90 SPPFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVDSAG-GVAWSFDSGAPLVTSYQGY-DHEQPSSAPSAPPFPVLIP-GVDGSLLVHTPGKG-IQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSG---PSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLF 311
            S  F PP PP           D+ L +V T+DG +H VD     V WSF SG P+ +SYQ + D +      S P   + +  G D  L VH+   G +++L L+A + V R P++A DG  +  G + +   ++D ++G +VQ +     PS       +D +              A     P  S   K  Q +++ R ++ L+     S + LWN+  S++   F
Sbjct:   33 SNRFLPPRPP-----------DDGLAVVVTLDGTMHLVDRVSRKVHWSFASGRPIYSSYQAFLDQDNDKLNTSGPNSDLYVDCGDDLQLYVHSRSHGKLKKLELSAEEYVRRTPYIAEDG-GITLGVKKTSIYLVDANSGRIVQTYRSDDPPST------LDIQNDAGETVRVTKDADALVESGPFNSTTVK--QFVYIMRTDYVLQYYSPNSAEVLWNVAFSKIDAEF 241          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|1029085090|ref|XP_016702754.1| (PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b-like [Gossypium hirsutum])

HSP 1 Score: 78.1814 bits (191), Expect = 1.179e-11
Identity = 61/229 (26.64%), Postives = 100/229 (43.67%), Query Frame = 0
Query:   90 SPPFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVDSAG-GVAWSFDSGAPLVTSYQGY-DHEQPSSAPSAPPFPVLIP-GVDGSLLVHTPGKG-IQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSG---PSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLF 311
            S  F PP PP           D+ L +V T+DG +H VD     V WSF SG P+ +SYQ + D +      S P   + +  G D  + VH+   G +++L L+  + V R P++A DG  +  G + +   ++D ++G +VQ +     PS   I                     A A     P      +Q +++ R ++ L+     S + LWN+  S++   F
Sbjct:   33 SNRFLPPRPP-----------DDGLAVVVTLDGTMHLVDRVSRKVHWSFASGRPIYSSYQAFLDQDNDKLNTSGPNSDLYVDCGDDLQVYVHSRSHGKLKKLELSCEEYVRRTPYIAEDG-GITLGVKKTSIYLVDANSGRIVQTYRSDDPPSTLDI--------QNDAGETVRWTKDADALVESGPFNSTTVKQFVYIMRTDYVLQYYSPNSAEVLWNVAFSKIDAEF 241          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|747046557|ref|XP_011100255.1| (serine/threonine-protein kinase/endoribonuclease IRE1b isoform X1 [Sesamum indicum])

HSP 1 Score: 75.0998 bits (183), Expect = 9.358e-11
Identity = 64/226 (28.32%), Postives = 105/226 (46.46%), Query Frame = 0
Query:   92 PFPPPPPPPRASTDQPRSDDEALLIVGTVDGWVHAVD-SAGGVAWSFDSGAPLVTSYQGY---DHEQPSSAPSAPPFPVLIPGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLFPS 313
            P P P  PP + T   R  D A  IV   DG V+ V+  +G V WSF SG  + +SYQ     D E+ +++     F +   G D  L +H  G    +LPLTA + V R PF++A G  +  G++ S   ++D   G VV+ F   + + +    D    + T     +      PP+P  +   ++   L++ R ++ L+     +G+ LW L  +++   F  
Sbjct:   31 PDPGPENPPLSLT---RKHDTA--IVAAPDGTVYLVEIGSGKVLWSFSSGPSIYSSYQQVPNGDGEKLNASADGDNFYIDC-GEDWELYMHGTGLTKVKLPLTAEEFVKRTPFVSAGGGVM-LGSKKSAVFLVDAKTGKVVRTFRSDNLQSVGEQGDEENSSLT----RTDIKQWLPPTPMDTEAVEKP--LYVTRTDYALKYTSVKTGKVLWYLMFADIEASFQC 243          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|823132798|ref|XP_012464291.1| (PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Gossypium raimondii] >gi|763746763|gb|KJB14202.1| hypothetical protein B456_002G114100 [Gossypium raimondii])

HSP 1 Score: 73.559 bits (179), Expect = 3.524e-10
Identity = 57/205 (27.80%), Postives = 93/205 (45.37%), Query Frame = 0
Query:  114 LLIVGTVDGWVHAVDS-AGGVAWSFDSGAPLVTSYQGY-DHEQPSSAPSAPPFPVLIP-GVDGSLLVHTPGKGIQ-RLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSG---PSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPLF 311
            L +V T+DG +H VD  +  V WSF SG P+ +SYQ + D +      S P   + +  G D  L VH+   G Q +L L+A + V R P++A DG  +  G + +   ++D ++G +VQ +     PS   I                     A A     P      +Q +++ R ++ L+     S + LWN+  S++   F
Sbjct:   46 LAVVVTLDGTMHLVDRGSRKVHWSFASGRPIYSSYQAFLDQDNDKLNASGPNSDLYVDCGDDLQLYVHSRSHGKQKKLELSAEEYVRRTPYIAEDG-GITLGVKKTSIYLVDANSGRIVQTYRSDDPPSTLDI--------QNDAGKTVRWTKGADALVEFGPFNSTTVKQFVYIMRTDYVLQYYSPNSAEVLWNVAFSKIDAEF 241          
BLAST of EWM28935.1 vs. NCBI_GenBank
Match: gi|909127304|gb|KNE54615.1| (IRE protein kinase [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 71.633 bits (174), Expect = 1.545e-9
Identity = 61/200 (30.50%), Postives = 95/200 (47.50%), Query Frame = 0
Query:  114 LLIVGTVDGWVHAVD-SAGGVAWSF-DSGAPLVTSYQGYDHEQPSSAPSAPPFPVLI-PGVDGSLLVHTPGKGIQRLPLTAGQLVDRAPFLAADGRTLYTGARSSEALMIDLDAGTVVQRFSGPSAEKIAHMIDPRLHTPTLAPAPSPPSASAPPSPHPSRKAKRRQLLWLGRVEHRLRAVDSMSGQELWNLTVSELTPL 310
            +L+V TVDG +HA+  S G + WS  D   PLV +         ++ P  PP   +  P  DG+L VH  GK IQRLP++   LV  +PF A DG T+Y G +++  L +D  +G V+  +    A   A+ +D   H      AP   S  +P        A     ++LGR ++ +   +       WN++ +E   +
Sbjct:  201 MLLVATVDGALHALRRSTGHLVWSLADHAGPLVHTATAAAARSDATGP--PPLTYIADPMGDGALYVHQAGKAIQRLPVSIKHLVRESPFRANDG-TVYLGHKATRFLAVDAHSGRVLHDY---GAGGHANALDGARHAAECLRAPLDSSVRSPLV-----DASLHAPIFLGRTDYVVSIHEPGRRAPRWNISFAEYESM 389          
The following BLAST results are available for this feature:
BLAST of EWM28935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111402|gb|EWM28935.1|0.000e+0100.00protein kinase and ribonuclease, partial [Nannochl... [more]
gi|298712889|emb|CBJ33405.1|7.070e-1834.10conserved unknown protein [Ectocarpus siliculosus][more]
gi|971519522|dbj|GAQ78686.1|5.725e-1727.57serine/threonine-protein kinase [Klebsormidium nit... [more]
gi|255077605|ref|XP_002502437.1|4.991e-1330.99Endoribonuclease/protein kinase [Micromonas commod... [more]
gi|1050631198|ref|XP_017638534.1|8.937e-1327.95PREDICTED: serine/threonine-protein kinase/endorib... [more]
gi|728812116|gb|KHG00664.1|9.017e-1327.95Serine/threonine-protein kinase/endoribonuclease I... [more]
gi|1029085090|ref|XP_016702754.1|1.179e-1126.64PREDICTED: serine/threonine-protein kinase/endorib... [more]
gi|747046557|ref|XP_011100255.1|9.358e-1128.32serine/threonine-protein kinase/endoribonuclease I... [more]
gi|823132798|ref|XP_012464291.1|3.524e-1027.80PREDICTED: serine/threonine-protein kinase/endorib... [more]
gi|909127304|gb|KNE54615.1|1.545e-930.50IRE protein kinase [Allomyces macrogynus ATCC 3832... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1742rna1742Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications