EWM28947.1, cds1726 (CDS) Nannochloropsis gaditana

Overview
NameEWM28947.1
Unique Namecds1726
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1362662..1362731 -
Alignment locationCM002457.1:1362540..1362572 -
Alignment locationCM002457.1:1362335..1362429 -
Alignment locationCM002457.1:1362265..1362279 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28947.1
Productacetyl-coenzyme a transporter 1
Orig transcript idgnl|cribi|Naga_102884g1.3516.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1362662..1362731 -
CM002457.1supercontigCM002457.1:1362540..1362572 -
CM002457.1supercontigCM002457.1:1362335..1362429 -
CM002457.1supercontigCM002457.1:1362265..1362279 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0008521acetyl-CoA transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR024371Acetyl-CoA_trnpstr_1
Homology
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|585111419|gb|EWM28947.1| (acetyl-coenzyme a transporter 1 [Nannochloropsis gaditana])

HSP 1 Score: 146.362 bits (368), Expect = 1.229e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQGGSKPGR 70
            MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQGGSKPGR
Sbjct:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQGGSKPGR 70
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|953488987|emb|CEG47530.1| (acetyl-coenzyme a transporter 1-like [Plasmopara halstedii])

HSP 1 Score: 107.457 bits (267), Expect = 1.155e-25
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG 64
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G
Sbjct:  157 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTIGYFVAYVGFLALNDPSTCNSYLRSEPKDEG 220
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|970663846|gb|KUG00915.1| (Acetyl-coenzyme A transporter 1 [Phytophthora nicotianae])

HSP 1 Score: 107.071 bits (266), Expect = 1.413e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|566011709|gb|ETI34620.1| (hypothetical protein F443_18909 [Phytophthora parasitica P1569] >gi|567949230|gb|ETK74962.1| hypothetical protein L915_18341 [Phytophthora parasitica] >gi|567977891|gb|ETL28385.1| hypothetical protein L916_18246 [Phytophthora parasitica] >gi|570315467|gb|ETO63415.1| hypothetical protein F444_18868 [Phytophthora parasitica P1976])

HSP 1 Score: 107.071 bits (266), Expect = 1.413e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|570969544|gb|ETP32663.1| (hypothetical protein F442_18692 [Phytophthora parasitica P10297])

HSP 1 Score: 107.071 bits (266), Expect = 1.471e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|568037257|gb|ETM34844.1| (hypothetical protein L914_18152 [Phytophthora parasitica] >gi|970654952|gb|KUF93188.1| hypothetical protein AM588_10009591 [Phytophthora nicotianae])

HSP 1 Score: 107.071 bits (266), Expect = 1.515e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|568007408|gb|ETL81647.1| (hypothetical protein L917_18066 [Phytophthora parasitica])

HSP 1 Score: 107.071 bits (266), Expect = 1.515e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|1214713462|gb|OWZ24353.1| (Acetyl-coenzyme A transporter [Phytophthora megakarya])

HSP 1 Score: 107.071 bits (266), Expect = 1.542e-25
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG 64
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G
Sbjct:  167 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPTTCNSYLRSEPEDEG 230
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|570939260|gb|ETP04517.1| (hypothetical protein F441_18722 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 107.071 bits (266), Expect = 1.577e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
[Close]
BLAST of EWM28947.1 vs. NCBI_GenBank
Match: gi|675175745|ref|XP_008896757.1| (hypothetical protein PPTG_05040 [Phytophthora parasitica INRA-310] >gi|568102499|gb|ETN17170.1| hypothetical protein PPTG_05040 [Phytophthora parasitica INRA-310])

HSP 1 Score: 107.071 bits (266), Expect = 1.625e-25
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    1 MATQDIAVDGWALTMLSRENVGLASTCNTIGQTLGYFLAHVGFLALNSAETCNRFLRRESLDQG-GSKPG 69
            MATQDIAVDGWA+TMLS +NVG ASTCNT+GQT+GYF+A+VGFLALN   TCN +LR E  D+G  S PG
Sbjct:  165 MATQDIAVDGWAITMLSEKNVGHASTCNTVGQTVGYFVAYVGFLALNDPATCNSYLRSEPEDEGLVSLPG 234
The following BLAST results are available for this feature:
BLAST of EWM28947.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111419|gb|EWM28947.1|1.229e-44100.00acetyl-coenzyme a transporter 1 [Nannochloropsis g... [more]
gi|953488987|emb|CEG47530.1|1.155e-2573.44acetyl-coenzyme a transporter 1-like [Plasmopara h... [more]
gi|970663846|gb|KUG00915.1|1.413e-2571.43Acetyl-coenzyme A transporter 1 [Phytophthora nico... [more]
gi|566011709|gb|ETI34620.1|1.413e-2571.43hypothetical protein F443_18909 [Phytophthora para... [more]
gi|570969544|gb|ETP32663.1|1.471e-2571.43hypothetical protein F442_18692 [Phytophthora para... [more]
gi|568037257|gb|ETM34844.1|1.515e-2571.43hypothetical protein L914_18152 [Phytophthora para... [more]
gi|568007408|gb|ETL81647.1|1.515e-2571.43hypothetical protein L917_18066 [Phytophthora para... [more]
gi|1214713462|gb|OWZ24353.1|1.542e-2573.44Acetyl-coenzyme A transporter [Phytophthora megaka... [more]
gi|570939260|gb|ETP04517.1|1.577e-2571.43hypothetical protein F441_18722 [Phytophthora para... [more]
gi|675175745|ref|XP_008896757.1|1.625e-2571.43hypothetical protein PPTG_05040 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1730rna1730Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications