EWM28971.1, cds1702 (CDS) Nannochloropsis gaditana

Overview
NameEWM28971.1
Unique Namecds1702
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1296408..1296726 -
Alignment locationCM002457.1:1296071..1296206 -
Alignment locationCM002457.1:1295810..1295887 -
Alignment locationCM002457.1:1295465..1295657 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28971.1
Productglutamate-rich wd repeat containing 1
Orig transcript idgnl|cribi|Naga_101324g1.9876.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1296408..1296726 -
CM002457.1supercontigCM002457.1:1296071..1296206 -
CM002457.1supercontigCM002457.1:1295810..1295887 -
CM002457.1supercontigCM002457.1:1295465..1295657 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR022052Histone-bd_RBBP4_N
Homology
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|585111459|gb|EWM28971.1| (glutamate-rich wd repeat containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 478.019 bits (1229), Expect = 1.982e-170
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MVKLSRSSKRVTTQSEKGGREIGKTGGEGGKRSRGGDSTEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEGMEGRSALGAV 241
            MVKLSRSSKRVTTQSEKGGREIGKTGGEGGKRSRGGDSTEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEGMEGRSALGAV
Sbjct:    1 MVKLSRSSKRVTTQSEKGGREIGKTGGEGGKRSRGGDSTEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEGMEGRSALGAV 241          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|970635396|gb|KUF80288.1| (Glutamate-rich WD repeat-containing protein [Phytophthora nicotianae] >gi|970656891|gb|KUF94847.1| hypothetical protein AM588_10008621 [Phytophthora nicotianae])

HSP 1 Score: 117.472 bits (293), Expect = 8.156e-27
Identity = 66/162 (40.74%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210
             G   R   ++   +++L FEDP+ D+ E+EE    ++E D DEE          G A RA  + DM+ +E A   V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT
Sbjct:   13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASRADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|566024537|gb|ETI47448.1| (hypothetical protein F443_08365 [Phytophthora parasitica P1569])

HSP 1 Score: 116.316 bits (290), Expect = 2.052e-26
Identity = 74/191 (38.74%), Postives = 113/191 (59.16%), Query Frame = 0
Query:   49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRRGGQESDSEEEEEDEEEEG---MEGRS 236
             G   R   ++   +++L FEDP+ D+ E+EE    ++E D DEE          G A  A  + DM+ +E A   V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT    G +S+ ++ ++D E EG   +E RS
Sbjct:   13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKTKHNDGSDSEDDDSDDDNETEGDPVLESRS 191          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|567961833|gb|ETK87370.1| (hypothetical protein L915_08197 [Phytophthora parasitica] >gi|567990559|gb|ETL40787.1| hypothetical protein L916_08121 [Phytophthora parasitica] >gi|570986168|gb|ETP45270.1| hypothetical protein F442_08307 [Phytophthora parasitica P10297])

HSP 1 Score: 115.546 bits (288), Expect = 3.560e-26
Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210
             G   R   ++   +++L FEDP+ D+ E+EE    ++E D DEE          G A  A  + DM+ +E A   V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D+++D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT
Sbjct:   13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|675192489|ref|XP_008905129.1| (hypothetical protein PPTG_11740 [Phytophthora parasitica INRA-310] >gi|568094520|gb|ETN09296.1| hypothetical protein PPTG_11740 [Phytophthora parasitica INRA-310] >gi|570328198|gb|ETO76146.1| hypothetical protein F444_08424 [Phytophthora parasitica P1976] >gi|570951973|gb|ETP17230.1| hypothetical protein F441_08350 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 114.775 bits (286), Expect = 5.932e-26
Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210
             G   R   ++   +++L FEDP+ D+ E+EE    ++E D DEE          G A  A  + DM+ +E A   V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT
Sbjct:   13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|568019779|gb|ETL93920.1| (hypothetical protein L917_08019 [Phytophthora parasitica])

HSP 1 Score: 114.775 bits (286), Expect = 5.932e-26
Identity = 65/162 (40.12%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210
             G   R   ++   +++L FEDP+ D+ E+EE    ++E D DEE          G A  A  + DM+ +E A   V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D++ D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT
Sbjct:   13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVDMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVPDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|807745131|ref|XP_012177360.1| (predicted protein [Fibroporia radiculosa] >gi|403411377|emb|CCL98077.1| predicted protein [Fibroporia radiculosa])

HSP 1 Score: 114.775 bits (286), Expect = 9.310e-26
Identity = 65/177 (36.72%), Postives = 104/177 (58.76%), Query Frame = 0
Query:   37 DSTEDVLARGGQGGGRGREGEEKKETKDNL-RFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYR 212
            DS+    +R  +   +G +G +   ++D +  FED +EDEFE +EE+ +  E  +++E+GMD++     +   A+ E D +       A P V+ PG+ H+L+  E L  D + Y+M H +   WPCLSFD+L+D LG  R RFP T Y   GTQAD A  N+++V K++++ +T R
Sbjct:   10 DSSSLTNSRANKRAPKGDKGRQNAASEDEMGEFEDGWEDEFESDEEVVDGAE--NEQEDGMDVD-----QVLPAIEESDEK------PAAPNVFIPGV-HKLESDEILEPDDTVYIMRHSMNVNWPCLSFDVLRDNLGDQRQRFPATAYIVAGTQADTAKNNEISVYKMSSLQRTQR 172          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|568050229|gb|ETM47184.1| (hypothetical protein L914_08083 [Phytophthora parasitica])

HSP 1 Score: 114.005 bits (284), Expect = 1.488e-25
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   49 GGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210
             G   R   ++   +++L FEDP+ D+ E+EE    ++E D DEE          G A  A  + +M+ +E A   V KV+ PG++ +L++ E L YD SAY MY+ +T EWP LS D+++D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT
Sbjct:   13 SGDVKRHTAQQHNGEEDLVFEDPFGDDMEDEE----MIESDGDEE-------IVDGEASSADKDVNMDGDEQAEKQVKKVFMPGVD-KLQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|301106937|ref|XP_002902551.1| (glutamate-rich WD repeat-containing protein [Phytophthora infestans T30-4] >gi|262098425|gb|EEY56477.1| glutamate-rich WD repeat-containing protein [Phytophthora infestans T30-4])

HSP 1 Score: 113.62 bits (283), Expect = 1.644e-25
Identity = 65/157 (41.40%), Postives = 96/157 (61.15%), Query Frame = 0
Query:   54 REGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVPKVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKT 210
            R   ++   +++L FEDP+ D+ E+EE    +VE D DEE          G A  A  + DM+ +E A   V KV+ PG++ +L + E L YD SAY MY+ +T EWP LS D+++D LG  R+RFP+T++   GTQA  A  N++TVMK++ + KT
Sbjct:   18 RHTAQQHNGEEDLVFEDPFGDDMEDEE----MVESDGDEE-------VVDGEAAGADKDVDMDGDEQAEKKVKKVFMPGVD-KLHDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT 162          
BLAST of EWM28971.1 vs. NCBI_GenBank
Match: gi|299116630|emb|CBN76255.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.62 bits (283), Expect = 2.412e-25
Identity = 75/197 (38.07%), Postives = 111/197 (56.35%), Query Frame = 0
Query:   25 TGGEGGKRSRGGD-----STEDVLARGGQGGGRGREGEEKKETKDNLRFEDPYEDEFEEEEEMEEVVELDSDEEEGMDLEAFRAGRAGRALGEDDMETEEAATSAVP---KVYCPGMEHELKEGEELVYDPSAYLMYHRLTPEWPCLSFDILQDTLGGGRTRFPITMYAACGTQADVAGKNKLTVMKLTNMTKTYRR 213
            T     KR R G+     + + V      GGG    G+  KE ++ L FEDP+ DEF+ E+   + +  + +E+   D     A     A         +A  +A P   KV+  G++ +L EG+EL YD +AY MYH L PEWPCLSFD+++D+LG  R+R+P T++A  GTQAD A  N+L VMKL+++ +T R+
Sbjct:   24 TSQSTSKRQRSGEDAATSTAKKVAPHATTGGG----GDGSKEEEEELVFEDPFGDEFDPEDI--DAMNAEPEEDGDDDDGGMDAETGDAAASGSSTAATDAEGAAAPQETKVWRAGVD-DLAEGDELEYDSTAYHMYHSLRPEWPCLSFDVIRDSLGANRSRYPHTVFAVAGTQADRADNNRLQVMKLSDLHRTGRK 213          
The following BLAST results are available for this feature:
BLAST of EWM28971.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111459|gb|EWM28971.1|1.982e-170100.00glutamate-rich wd repeat containing 1 [Nannochloro... [more]
gi|970635396|gb|KUF80288.1|8.156e-2740.74Glutamate-rich WD repeat-containing protein [Phyto... [more]
gi|566024537|gb|ETI47448.1|2.052e-2638.74hypothetical protein F443_08365 [Phytophthora para... [more]
gi|567961833|gb|ETK87370.1|3.560e-2640.12hypothetical protein L915_08197 [Phytophthora para... [more]
gi|675192489|ref|XP_008905129.1|5.932e-2640.12hypothetical protein PPTG_11740 [Phytophthora para... [more]
gi|568019779|gb|ETL93920.1|5.932e-2640.12hypothetical protein L917_08019 [Phytophthora para... [more]
gi|807745131|ref|XP_012177360.1|9.310e-2636.72predicted protein [Fibroporia radiculosa] >gi|4034... [more]
gi|568050229|gb|ETM47184.1|1.488e-2539.51hypothetical protein L914_08083 [Phytophthora para... [more]
gi|301106937|ref|XP_002902551.1|1.644e-2541.40glutamate-rich WD repeat-containing protein [Phyto... [more]
gi|299116630|emb|CBN76255.1|2.412e-2538.07conserved unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1706rna1706Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications