EWM29001.1, cds1678 (CDS) Nannochloropsis gaditana

Overview
NameEWM29001.1
Unique Namecds1678
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1251222..1251410 -
Alignment locationCM002457.1:1250710..1250823 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29001.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100373g1.5927.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1251222..1251410 -
CM002457.1supercontigCM002457.1:1250710..1250823 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|585111500|gb|EWM29001.1| (hypothetical protein Naga_100373g1 [Nannochloropsis gaditana])

HSP 1 Score: 202.986 bits (515), Expect = 3.390e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSAPP 100
            MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSAPP
Sbjct:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSAPP 100          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|585100765|gb|EWM20836.1| (secreted protein [Nannochloropsis gaditana])

HSP 1 Score: 96.6709 bits (239), Expect = 6.042e-23
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSL 69
            MTVGSTTLT+ G++D+FMIKLD +GSPVWA SFGG++   G GIAVDASGSSYTTGYF+G MT  S +L
Sbjct:    1 MTVGSTTLTSAGSEDIFMIKLDPNGSPVWAQSFGGTDADEGYGIAVDASGSSYTTGYFEGTMTVGSTTL 69          

HSP 2 Score: 85.5001 bits (210), Expect = 1.531e-18
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMT 63
            MTVGSTTLT+ G  D+FMIKLD  G+PVWA SFGG   + G  IAVDASGSSYTTGYF G MT
Sbjct:   62 MTVGSTTLTSNGLTDIFMIKLDLDGNPVWAQSFGGIASNEGYDIAVDASGSSYTTGYFQGTMT 124          

HSP 3 Score: 84.3445 bits (207), Expect = 3.684e-18
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMT----------DFSVSLIK 71
            MTVG+TTLTAVG+  ++MIKL+  G+PVWA SFGG+    G GIAVDASGSSYTTGYF   MT          DF + +IK
Sbjct:  123 MTVGNTTLTAVGSSGIYMIKLNLDGNPVWAQSFGGNADDEGKGIAVDASGSSYTTGYFAETMTVGSTNLTAVGDFDIFMIK 203          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|585100769|gb|EWM20839.1| (secreted protein [Nannochloropsis gaditana])

HSP 1 Score: 84.7297 bits (208), Expect = 4.847e-17
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSLIKENHVCGATPC 81
            +TVGSTTLT+ G  D+FMIKLD  G+PVWA  FGG++ + G  I VDASGSSYT G F GNMT   V  +  + +    PC
Sbjct:  461 LTVGSTTLTSAGFSDIFMIKLDPDGNPVWAQGFGGTDSNVGFRIGVDASGSSYTAGSFKGNMT---VGSVPPSRLLAVPPC 538          

HSP 2 Score: 81.2629 bits (199), Expect = 7.580e-16
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSL 69
            MTVGS  LTAVG  D+FMIKLD  G+PVWA SFGG++ +   GIA+DASGSSYT G F GN+T  S +L
Sbjct:  401 MTVGSANLTAVGGPDIFMIKLDLDGNPVWAQSFGGTD-TNANGIALDASGSSYTAGGFTGNLTVGSTTL 468          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|585111492|gb|EWM28994.1| (nuclear protein set [Nannochloropsis gaditana])

HSP 1 Score: 78.9518 bits (193), Expect = 8.243e-16
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0
Query:   64 DFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSAPP 100
            DFSVSLIKENHVCGATPCLYRGSGGSKCICFGQS  P
Sbjct:  197 DFSVSLIKENHVCGATPCLYRGSGGSKCICFGQSEHP 233          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|585101746|gb|EWM21515.1| (hypothetical protein Naga_100317g3 [Nannochloropsis gaditana])

HSP 1 Score: 80.4925 bits (197), Expect = 1.429e-15
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMT 63
            M VG+TTLTAVG  D F+IKLDS+GSPVWA SFG +    G+GI VDAS +S+ TG+F GNM+
Sbjct:  454 MPVGNTTLTAVGLQDFFVIKLDSTGSPVWAKSFGSNLDDMGLGITVDASDNSFITGFFSGNMS 516          

HSP 2 Score: 75.8702 bits (185), Expect = 6.288e-14
Identity = 35/60 (58.33%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDG 60
            M+VG+TTL  +G+ D++MIKL+S+G PVWA +FGG+   +G  I VDASG+SYTTG+F G
Sbjct:  515 MSVGNTTLPIIGSQDIYMIKLNSTGEPVWAQNFGGTGEPQGNSIVVDASGNSYTTGFFYG 574          

HSP 3 Score: 58.5362 bits (140), Expect = 6.144e-8
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMT--DFSVSLIKENHVC 76
            + VG     +  N  +F+IKLDS+G+PVWA +F     + G GIAVDA  +SY TG F+GN++   FS++  +   +C
Sbjct:  576 LNVGDIRFLSFSNA-IFLIKLDSTGNPVWAKNFTSVGTAEGNGIAVDAFENSYITGEFNGNLSVGSFSLTAPERQAMC 652          

HSP 4 Score: 56.9954 bits (136), Expect = 2.201e-7
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNM 62
            M VG T LT     +VF+ KLDS G  VWA +FG      G  IAVD SG+SYTTG F+  M
Sbjct:  393 MIVGVTILTPGSEQNVFVFKLDSGGQVVWAKNFGTIGIPYGQSIAVDLSGNSYTTGPFEETM 454          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|585099315|gb|EWM20045.1| (hypothetical protein Naga_102096g1 [Nannochloropsis gaditana])

HSP 1 Score: 65.855 bits (159), Expect = 7.617e-12
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
Query:   18 MIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMT 63
            MIKLD  G+PVWA SFGG++  +G GI VDASGSSYTTG F G MT
Sbjct:    1 MIKLDPDGNPVWAQSFGGTDDDQGYGIGVDASGSSYTTGGFQGTMT 46          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|1210264185|dbj|BAZ83180.1| (hypothetical protein NIES73_44670 [Sphaerospermopsis kisseleviana NIES-73])

HSP 1 Score: 65.855 bits (159), Expect = 1.892e-10
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYF 58
            T G   LT+ G+DD F+ KLDSSG  +WA  FGG+ Y  G GIA D +G+SY TGYF
Sbjct:  165 TFGDIALTSAGSDDAFITKLDSSGKFLWAQKFGGTSYDYGEGIASDGAGNSYITGYF 221          

HSP 2 Score: 61.2326 bits (147), Expect = 7.316e-9
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYF 58
            T G+ TLT+ G  D F+ KLDSSG+ +WA  FGG+ Y   +GI+VD+SG+SY TG F
Sbjct:  104 TFGNITLTSTGLGDAFITKLDSSGNFLWAQKFGGASYDIAMGISVDSSGNSYVTGSF 160          

HSP 3 Score: 60.077 bits (144), Expect = 2.095e-8
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYF 58
            +T G+TTLT+ G +D F+ KLD SG+ +WA   GGS Y+   GI VD  G++Y TG+F
Sbjct:   42 VTFGNTTLTSTGGNDSFIAKLDKSGNVLWAQKLGGSSYNTSSGITVDNLGNTYATGFF 99          

HSP 4 Score: 57.7658 bits (138), Expect = 1.108e-7
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDG 60
            T G  TLT+ G  D F+ KLDSSG  +WA   GG+ Y    GI VD+SG++Y TG F+G
Sbjct:  226 TFGDITLTSAGGSDGFITKLDSSGKFLWAKKLGGTSYDSAHGITVDSSGNTYITGSFNG 284          

HSP 5 Score: 56.225 bits (134), Expect = 4.009e-7
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFD-----GN--MTDFSVSLIKENHVCGATPCL 82
            T G+ TLT+ G+ D F+ KLDS+G  + A +FGG+   RG+ I  DA G+ Y TG F+     GN  +  FS+S+  + +   ATP +
Sbjct:  347 TFGNITLTSAGDSDAFVAKLDSNGKFLSAQNFGGTLADRGLDITSDAKGNIYATGGFENTATFGNQYLRRFSLSMAHQTNFLIATPII 434          

HSP 6 Score: 55.4546 bits (132), Expect = 7.333e-7
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYF 58
            T G+ TLT+ GND+ F+ KLDSSG  +WA  F  S +    GI VD+SG+ Y TGYF
Sbjct:  287 TFGNITLTSTGNDNAFITKLDSSGKFLWAQKF-DSIFCEANGITVDSSGNIYVTGYF 342          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|653153451|ref|WP_027402469.1| (hypothetical protein [Aphanizomenon flos-aquae])

HSP 1 Score: 65.4698 bits (158), Expect = 2.648e-10
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    4 GSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDF 65
            G + LT+VGN DVF+ KL+S GS  WA SFGG+   +G  +AVD+SG+ Y+TGYF+G + DF
Sbjct:  339 GVSNLTSVGNTDVFISKLNSDGSFAWAKSFGGTSADQGYSLAVDSSGNVYSTGYFNGTV-DF 399          

HSP 2 Score: 61.6178 bits (148), Expect = 5.312e-9
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    4 GSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDF 65
            G + L++ GN DVF+ KL+S GS  WA SFGG+   +G+ +AVD+SG+ Y+TGYF+G + DF
Sbjct:  209 GVSNLSSGGNTDVFISKLNSDGSFAWAKSFGGTTADQGLSLAVDSSGNVYSTGYFNGTV-DF 269          

HSP 3 Score: 56.6102 bits (135), Expect = 3.205e-7
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    4 GSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDG 60
            G + L++ G  DVF+ KL+  GS  WA SFGG+   +G+ + VD+SG+ Y+TGYF+G
Sbjct:  274 GVSNLSSAGGQDVFISKLNGDGSFAWAKSFGGTTADQGLSLTVDSSGNVYSTGYFNG 330          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|1085118333|gb|OGT13239.1| (hypothetical protein A3F73_07820 [Gallionellales bacterium RIFCSPLOWO2_12_FULL_59_22])

HSP 1 Score: 64.3142 bits (155), Expect = 6.288e-10
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 0
Query:    1 MTVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYS-RGVGIAVDASGSSYTTGYFD-GNMTDFSVSLIKEN 73
            +T+GS TLT +G  D F+ KLD+SG+ VWA ++GG+  S RG  IAVDASG+ Y  GYF   N+T  +++ I  N
Sbjct:   60 LTLGSVTLTKIGGLDAFVAKLDASGTVVWAKNYGGAGASARGNSIAVDASGNVYLGGYFQAANLTTPALTKIGSN 134          
BLAST of EWM29001.1 vs. NCBI_GenBank
Match: gi|1121336446|ref|WP_073644345.1| (hypothetical protein [Nostoc calcicola] >gi|1115261606|gb|OKH25311.1| hypothetical protein FACHB389_29560 [Nostoc calcicola FACHB-389])

HSP 1 Score: 63.929 bits (154), Expect = 1.021e-9
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMT 63
            T  + TLT+VGN+D F+ KLDSSG+ +WA + GG+    G GI VD +G++Y TGYF  N T
Sbjct:  226 TFDNITLTSVGNNDAFITKLDSSGNFLWAKNLGGTSDDSGRGIIVDETGNAYFTGYFSDNAT 287          

HSP 2 Score: 60.4622 bits (145), Expect = 1.719e-8
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0
Query:    2 TVGSTTLTAVGNDDVFMIKLDSSGSPVWATSFGGSEYSRGVGIAVDASGSSYTTGYFDGNMTDFSVSL 69
            T G+TT ++ GN DVF+ KLD++G+ VWA + GG+E   G GI  D  G+ Y +G F G  T  S +L
Sbjct:  287 TFGTTTFSSAGNTDVFVTKLDNNGNTVWAKNLGGTESDEGYGIVADEVGNIYVSGIFSGTATFASTTL 354          
The following BLAST results are available for this feature:
BLAST of EWM29001.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111500|gb|EWM29001.1|3.390e-66100.00hypothetical protein Naga_100373g1 [Nannochloropsi... [more]
gi|585100765|gb|EWM20836.1|6.042e-2371.01secreted protein [Nannochloropsis gaditana][more]
gi|585100769|gb|EWM20839.1|4.847e-1754.32secreted protein [Nannochloropsis gaditana][more]
gi|585111492|gb|EWM28994.1|8.243e-1694.59nuclear protein set [Nannochloropsis gaditana][more]
gi|585101746|gb|EWM21515.1|1.429e-1563.49hypothetical protein Naga_100317g3 [Nannochloropsi... [more]
gi|585099315|gb|EWM20045.1|7.617e-1269.57hypothetical protein Naga_102096g1 [Nannochloropsi... [more]
gi|1210264185|dbj|BAZ83180.1|1.892e-1056.14hypothetical protein NIES73_44670 [Sphaerospermops... [more]
gi|653153451|ref|WP_027402469.1|2.648e-1054.84hypothetical protein [Aphanizomenon flos-aquae][more]
gi|1085118333|gb|OGT13239.1|6.288e-1049.33hypothetical protein A3F73_07820 [Gallionellales b... [more]
gi|1121336446|ref|WP_073644345.1|1.021e-951.61hypothetical protein [Nostoc calcicola] >gi|111526... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1682rna1682Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications