EWM29003.1, cds1670 (CDS) Nannochloropsis gaditana

Overview
NameEWM29003.1
Unique Namecds1670
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1235434..1235632 -
Alignment locationCM002457.1:1234797..1235276 -
Alignment locationCM002457.1:1234597..1234641 -
Alignment locationCM002457.1:1234356..1234420 -
Alignment locationCM002457.1:1234023..1234154 -
Alignment locationCM002457.1:1233918..1233938 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29003.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101720g1.10003.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1235434..1235632 -
CM002457.1supercontigCM002457.1:1234797..1235276 -
CM002457.1supercontigCM002457.1:1234597..1234641 -
CM002457.1supercontigCM002457.1:1234356..1234420 -
CM002457.1supercontigCM002457.1:1234023..1234154 -
CM002457.1supercontigCM002457.1:1233918..1233938 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
BLAST of EWM29003.1 vs. NCBI_GenBank
Match: gi|585111505|gb|EWM29003.1| (hypothetical protein Naga_101720g1 [Nannochloropsis gaditana])

HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
Query:    1 MVSELNISSSEMESLAAQISSLQEEMLARRKEKKEGRERRKRRRRRRSSTTEEGGNEDTEEGGRQEAPPPASTGSPSLPASHSTSTRSPLGGTSRSSSLAPASSPTPVTHHPRYLHPPSTLSSSSHPSPLPSNASSFLPPSEAGDALSLSRSTPLGTSTSSSIASSIPSSLPSYHTRSDMPRPASYEHILHQKQQGGEGGEEGKEDGDKGREGPATSLEKLLLTDIDYQDSDFEEEDSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRLPIVSP 313
            MVSELNISSSEMESLAAQISSLQEEMLARRKEKKEGRERRKRRRRRRSSTTEEGGNEDTEEGGRQEAPPPASTGSPSLPASHSTSTRSPLGGTSRSSSLAPASSPTPVTHHPRYLHPPSTLSSSSHPSPLPSNASSFLPPSEAGDALSLSRSTPLGTSTSSSIASSIPSSLPSYHTRSDMPRPASYEHILHQKQQGGEGGEEGKEDGDKGREGPATSLEKLLLTDIDYQDSDFEEEDSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRLPIVSP
Sbjct:    1 MVSELNISSSEMESLAAQISSLQEEMLARRKEKKEGRERRKRRRRRRSSTTEEGGNEDTEEGGRQEAPPPASTGSPSLPASHSTSTRSPLGGTSRSSSLAPASSPTPVTHHPRYLHPPSTLSSSSHPSPLPSNASSFLPPSEAGDALSLSRSTPLGTSTSSSIASSIPSSLPSYHTRSDMPRPASYEHILHQKQQGGEGGEEGKEDGDKGREGPATSLEKLLLTDIDYQDSDFEEEDSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRLPIVSP 313          
BLAST of EWM29003.1 vs. NCBI_GenBank
Match: gi|585103696|gb|EWM22963.1| (serine threonine protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 73.9442 bits (180), Expect = 6.375e-11
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0
Query:  242 ELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRL 308
            E+ RLR +Y K +QR+QKAF  R+E+M K RQ+KE+ H KLLE+H + MADF+R++  A  +Q  RL
Sbjct: 1157 EITRLRSDYEKGLQRSQKAFSIRLENMRKSRQEKEESHRKLLEKHMRDMADFERKVRTAEKEQIMRL 1223          
BLAST of EWM29003.1 vs. NCBI_GenBank
Match: gi|1210514180|dbj|GAX26962.1| (WNK lysine deficient protein kinase [Fistulifera solaris])

HSP 1 Score: 72.7886 bits (177), Expect = 1.500e-10
Identity = 31/79 (39.24%), Postives = 58/79 (73.42%), Query Frame = 0
Query:  230 DSDFEEEDSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRL 308
            D  + +E+ +D EL++L Q++ K++QRA+K + +RM+S+ +C+ ++E+ HLK LE+H+K  A+F++RL    + Q KR+
Sbjct: 1021 DDAYSDEEESDDELRKLDQDFQKNLQRARKVYDSRMDSLQRCKVEREEQHLKTLEKHEKERAEFEKRLAQEAEQQRKRI 1099          
BLAST of EWM29003.1 vs. NCBI_GenBank
Match: gi|1210530255|dbj|GAX11171.1| (WNK lysine deficient protein kinase [Fistulifera solaris])

HSP 1 Score: 64.6994 bits (156), Expect = 6.610e-8
Identity = 27/66 (40.91%), Postives = 50/66 (75.76%), Query Frame = 0
Query:  243 LQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRL 308
            L++L Q++ K++QRA+K + +RM+S+ +C+ ++E+ HLK LE+H+K  A+F++RL    + Q KR+
Sbjct: 1035 LRKLDQDFQKNLQRARKVYDSRMDSLQRCKVEREEQHLKTLEKHEKERAEFEKRLAQEAEQQRKRI 1100          
BLAST of EWM29003.1 vs. NCBI_GenBank
Match: gi|397614966|gb|EJK63127.1| (hypothetical protein THAOC_16234 [Thalassiosira oceanica])

HSP 1 Score: 62.003 bits (149), Expect = 6.510e-7
Identity = 25/72 (34.72%), Postives = 52/72 (72.22%), Query Frame = 0
Query:  237 DSADQELQRLRQEYIKSVQRAQKAFKARMESMYKCRQDKEDWHLKLLEQHQKAMADFDRRLLLATDDQAKRL 308
            D+  +E+++L QE+ K +QRA+K++  RM+++++ +++ E  H   LE+H+K   +F++R+ LA ++Q +RL
Sbjct: 1111 DAETEEIRKLEQEFEKKLQRAKKSYGTRMDNLHRSKEEAEAQHRHTLEKHEKEKMEFEKRVRLAEEEQTRRL 1182          
The following BLAST results are available for this feature:
BLAST of EWM29003.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585111505|gb|EWM29003.1|0.000e+0100.00hypothetical protein Naga_101720g1 [Nannochloropsi... [more]
gi|585103696|gb|EWM22963.1|6.375e-1152.24serine threonine protein kinase [Nannochloropsis g... [more]
gi|1210514180|dbj|GAX26962.1|1.500e-1039.24WNK lysine deficient protein kinase [Fistulifera s... [more]
gi|1210530255|dbj|GAX11171.1|6.610e-840.91WNK lysine deficient protein kinase [Fistulifera s... [more]
gi|397614966|gb|EJK63127.1|6.510e-734.72hypothetical protein THAOC_16234 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1674rna1674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications