EWM29024.1, cds1648 (CDS) Nannochloropsis gaditana

Overview
NameEWM29024.1
Unique Namecds1648
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1173861..1174001 -
Alignment locationCM002457.1:1172563..1173537 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29024.1
Productribosome biogenesis regulatory protein
Orig transcript idgnl|cribi|Naga_100071g22.7942.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1173861..1174001 -
CM002457.1supercontigCM002457.1:1172563..1173537 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007023Ribosom_reg
Homology
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|585111542|gb|EWM29024.1| (ribosome biogenesis regulatory protein [Nannochloropsis gaditana])

HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0
Query:    1 MRATAATVVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKSHVNIDALEPERAGYSRKKGRGAVKRKK 371
            MRATAATVVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKSHVNIDALEPERAGYSRKKGRGAVKRKK
Sbjct:    1 MRATAATVVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKSHVNIDALEPERAGYSRKKGRGAVKRKK 371          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|298707303|emb|CBJ25930.1| (Ribosome biogenesis regulatory protein homolog [Ectocarpus siliculosus])

HSP 1 Score: 237.269 bits (604), Expect = 5.900e-72
Identity = 155/370 (41.89%), Postives = 194/370 (52.43%), Query Frame = 0
Query:    9 VKAVDVAPGAYNGA---NSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPG-ATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKK----VKKVRKVAPVADSKSLVEESKRMNSVL---STVLRPKGTGPGTGKSHVNIDALE-PERAGYSRKKGRGA 366
            V A D+AP A+         H+D  DDL +DL +L  V+ H VD +    D E+YL   A   VQ ++NRLF LP   S  GPV TLP    + LPRAKP+P  +  TRW++FAKEKGIT  KRSR VWD+D +EWRPR GYKRA +GV + AIVEVKPG+DP  +PW++A+E K  RV KNL  +AKN     G      G KP                         G+PVDL            P A    GG   P KRGK     ALE+ Q STAS+GKFD +   EPE++    V++  K   V   +      K +NSV+   S      GT     +S    DA+E P  AG  RKKG+GA
Sbjct:    3 VAAADIAPKAFEQLVKEGGEHQDVEDDLQFDLRNLLVVNPHQVDEQALADDSEEYLKGQAQAAVQSLINRLFVLPTVPSEVGPVATLPAKEESILPRAKPVPAPKAETRWDRFAKEKGITGSKRSRMVWDDDLKEWRPRHGYKRANDGVLNHAIVEVKPGKDPMANPWSEAREEKKGRVEKNLSNRAKNVERAGG------GAKP-------------------------GIPVDLL-----------PSAKDGSGGGGAPAKRGKANTKGALELVQHSTASMGKFDERRHAEPERRKGKGVRRAFKPVTVGSGEETQGHLKILNSVMIGKSKSADKDGTARSAKESLAAYDAIEGPRDAGAKRKKGKGA 330          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|1173947419|gb|OQR95722.1| (ribosome biogenesis regulatory protein [Thraustotheca clavata])

HSP 1 Score: 214.157 bits (544), Expect = 3.103e-63
Identity = 141/344 (40.99%), Postives = 189/344 (54.94%), Query Frame = 0
Query:    9 VKAVDVAPGAYN-GANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVK-KVRKVAPVADSKSLVEESKRMNSVLSTVL-RPKGTGPGTGKSHVNID 349
            +KA ++AP AY+ G NS+   K DDL YDL +LAA D+HP  ++   ++ E  +  SA   VQ ++N +F+LP E ++ GP+  LP  TT +PR KPLP+ +  TRWEKFA+EKGI  KK+ R VWDE+ Q W PRWGYKRA + + D AI  VK  +DP  DPWT+ ++AK+ RV KN++ QA N   GRG +   P                       P APV G+PV+L  T+                     K+RGK     AL+  Q STAS+GKFD    GE E+K K K  K   V  S+    E +R  SVL+ VL R +  G G   S+ + D
Sbjct:    3 IKAAEIAPAAYSEGKNSSIVSKQDDLTYDLGNLAAFDTHPFIVKNLTNENE--IKASARDNVQLLINAIFDLPREMTDVGPMSKLPVGTTLIPREKPLPKPKVETRWEKFAREKGIENKKKERMVWDEEKQAWAPRWGYKRANDDIHDWAI-PVKKNDDPYADPWTERKQAKAERVQKNMRNQANNLKNGRGITPSVP----------------------VPKAPV-GIPVELLDTQDKKT-----------------KQRGKEGTKAALQKVQFSTASMGKFDKMRQGEAERKQKGKRNKFLSVTGSEQT--EKERSMSVLNHVLGREENKGKGKPSSNTDED 301          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|695453323|ref|XP_009536175.1| (hypothetical protein PHYSODRAFT_526169 [Phytophthora sojae] >gi|348668179|gb|EGZ08003.1| hypothetical protein PHYSODRAFT_526169 [Phytophthora sojae])

HSP 1 Score: 201.445 bits (511), Expect = 2.326e-58
Identity = 133/337 (39.47%), Postives = 178/337 (52.82%), Query Frame = 0
Query:    8 VVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKS 344
            VVKA ++AP AY   +++   K DDL+YDL +LAA D+HP     F    EK L   A   VQ ++N +FELP E S+ GP+  LP  +T +PR KPLP+ +  T+WEKFAKEKGI K+K+SR V+DE+  EW   WGY+RA + ++D A VEVK G+    DPWT+ ++ K ARV KNL+ QA N   GRG  +                    A  A   P    G+PV+L  T                   A  K+RGK    K LE  Q STAS+GKFD    GE E+K+K  R            E+ + MN++   + R +  G   GK+
Sbjct:    2 VVKASEIAPAAYAVGSTSSVQKEDDLVYDLGNLAAFDTHP-----FTYQNEKELALHARENVQLLINHIFELPREMSDMGPLAQLPEPSTVIPREKPLPKPKVETKWEKFAKEKGIEKRKKSRKVFDENTGEWGHSWGYQRAGDDMKDWA-VEVKEGDME--DPWTKRKQEKRARVDKNLRAQANNLKQGRGKQL--------------------AGIAGRTPT---GIPVELMNT-----------------DDAKAKQRGKEGTNKTLEKVQFSTASMGKFDKMREGESERKIKGKRNHFLPTTGAEATEKERSMNALKRVLGREENAGKNKGKT 290          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|1173950229|gb|OQR98206.1| (ribosome biogenesis regulatory protein [Achlya hypogyna])

HSP 1 Score: 200.675 bits (509), Expect = 4.641e-58
Identity = 129/326 (39.57%), Postives = 179/326 (54.91%), Query Frame = 0
Query:    9 VKAVDVAPGAYN-GANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKK-VKKVRKVAPVADSKSLVEESKRMNSVLSTVL 332
            +KA ++AP AY+ GA+++   K DDL YDL +LAA D+HP  ++   +  EK +  +A   VQ ++N++F+LP + ++ GP+  LP  +T +PR KPLP+ +  TRWEKFA+EKGI  KK+ R VWDE  Q W PRWGYKRA + + D A V VK  +DP  DPWT+ ++AK+ RV KNL+ QA N   GRG     P                     + P  P+ G+PV++  T                      K+RGK     AL+  Q STAS+GKFD    GE E+K   K  K   V  ++    E +R  SVL+ VL
Sbjct:    3 IKAAEIAPAAYSEGAHTSVVAKADDLSYDLGNLAAFDTHPFGVKN--TTDEKEIKAAARENVQLLINQIFDLPRQMTDMGPMAQLPAGSTVIPREKPLPKPKVETRWEKFAREKGIDNKKKDRMVWDEAKQAWAPRWGYKRANDDMNDWA-VPVKKNDDPFADPWTERKQAKAERVQKNLRNQANNLKNGRGIQPSVP-------------------VPSAPKTPL-GIPVEMLDT-----------------ADKKAKQRGKEGTKAALQKVQFSTASMGKFDKMRTGEAERKQTGKRNKFLSVTGAEKT--EKERSMSVLNHVL 286          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|675182393|ref|XP_008900081.1| (hypothetical protein PPTG_07556 [Phytophthora parasitica INRA-310] >gi|568099811|gb|ETN14517.1| hypothetical protein PPTG_07556 [Phytophthora parasitica INRA-310])

HSP 1 Score: 198.749 bits (504), Expect = 2.673e-57
Identity = 131/337 (38.87%), Postives = 176/337 (52.23%), Query Frame = 0
Query:    8 VVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKS 344
            VVKA ++AP AY   ++++  K DDL YDL +LAA D+HP     F    EK L   A   VQ ++N +FELP E S+ GP+  LP   T +PR KPLP+ +  T+WEKFAKEKGI K+K+SR V+DE   EW   WGY+RA + ++D A VE+K G+    DPWT+ ++ K +RV KNL+ QA N   GRG  +                    A  A   P    G+PV+L  T                   A  K+RGK    K LE  Q STAS+GKFD    GE E+K+K  R            E+ + MN++   + R +  G   GK+
Sbjct:    2 VVKASEIAPAAYAEGSTSNVQKEDDLTYDLGNLAAFDTHP-----FTYQNEKELALHARENVQLLINHIFELPREMSDMGPLAQLPAPETVIPREKPLPKPKVETKWEKFAKEKGIEKRKKSRKVFDEATGEWSHTWGYQRAGDNMKDWA-VEMKEGDME--DPWTKRKQEKRSRVDKNLRAQANNLKQGRGKQL--------------------AGIAGRTPT---GIPVELMNT-----------------DDAKAKQRGKEGTNKTLEKVQFSTASMGKFDKMREGESERKIKGKRNHFLPTTGAETTEKERSMNALKRVLGREENAGKHKGKT 290          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|570335081|gb|ETO83029.1| (hypothetical protein F444_02901 [Phytophthora parasitica P1976])

HSP 1 Score: 198.749 bits (504), Expect = 2.839e-57
Identity = 131/337 (38.87%), Postives = 176/337 (52.23%), Query Frame = 0
Query:    8 VVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKS 344
            VVKA ++AP AY   ++++  K DDL YDL +LAA D+HP     F    EK L   A   VQ ++N +FELP E S+ GP+  LP   T +PR KPLP+ +  T+WEKFAKEKGI K+K+SR V+DE   EW   WGY+RA + ++D A VE+K G+    DPWT+ ++ K +RV KNL+ QA N   GRG  +                    A  A   P    G+PV+L  T                   A  K+RGK    K LE  Q STAS+GKFD    GE E+K+K  R            E+ + MN++   + R +  G   GK+
Sbjct:    2 VVKASEIAPAAYAEGSTSNVQKEDDLTYDLGNLAAFDTHP-----FTYQNEKELALHARENVQLLINHIFELPREMSDMGPLAQLPAPETVIPREKPLPKPKVETKWEKFAKEKGIEKRKKSRKVFDEATGEWSHTWGYQRAGDNMKDWA-VEMKEGDME--DPWTKRKQEKRSRVDKNLRAQANNLKQGRGKQL--------------------AGIAGRTPT---GIPVELMNT-----------------DDAKAKQRGKEGTNKTLEKVQFSTASMGKFDKMREGESERKIKGKRNHFLPTTGAETTEKERSMNALKRVLGREENAGKHKGKT 290          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|570959116|gb|ETP24095.1| (hypothetical protein F441_02865 [Phytophthora parasitica CJ01A1] >gi|570968428|gb|ETP31547.1| hypothetical protein F442_19580 [Phytophthora parasitica P10297])

HSP 1 Score: 198.364 bits (503), Expect = 3.930e-57
Identity = 131/337 (38.87%), Postives = 176/337 (52.23%), Query Frame = 0
Query:    8 VVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKS 344
            VVKA ++AP AY   ++++  K DDL YDL +LAA D+HP     F    EK L   A   VQ ++N +FELP E S+ GP+  LP   T +PR KPLP+ +  T+WEKFAKEKGI K+K+SR V+DE   EW   WGY+RA + ++D A VE+K G+    DPWT+ ++ K +RV KNL+ QA N   GRG  +                    A  A   P    G+PV+L  T                   A  K+RGK    K LE  Q STAS+GKFD    GE E+K+K  R            E+ + MN++   + R +  G   GK+
Sbjct:    2 VVKASEIAPAAYAEGSTSNVQKEDDLTYDLGNLAAFDTHP-----FTYQNEKELALHARENVQLLINHIFELPREMSDMGPLAQLPAPETVIPREKPLPKPKVETKWEKFAKEKGIEKRKKSRKVFDEATGEWSHTWGYQRAGDDMKDWA-VEMKEGDME--DPWTKRKQEKRSRVDKNLRAQANNLKQGRGKQL--------------------AGIAGRTPT---GIPVELMNT-----------------DDAKAKQRGKEGTNKTLEKVQFSTASMGKFDKMREGESERKIKGKRNHFLPTTGAETTEKERSMNALKRVLGREENAGKHKGKT 290          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|673041343|ref|XP_008874632.1| (hypothetical protein H310_10139 [Aphanomyces invadans] >gi|574469842|gb|ETV96855.1| hypothetical protein H310_10139 [Aphanomyces invadans])

HSP 1 Score: 197.593 bits (501), Expect = 8.489e-57
Identity = 135/340 (39.71%), Postives = 178/340 (52.35%), Query Frame = 0
Query:    8 VVKAVDVAPGAYNGANSAHK-DKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKK-VKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKSH 345
            VVKA ++AP AY+   S+    K DDL YDL +LAA D+HP  ++    + E  L   A   VQ ++N +FELP + ++ GP+  LP  TT +PR KPLP+ +  TRWEKFA+EKGI  KK  R VWDE  Q W P+WGYKRA +   D A+  VK G DP  DPWT+ ++ K+ RV KNL+ QA N   GRG     P +K                       P+ G+PV+L  T                  K + K+RGK     AL+  Q STAS+GKFD K  GE E+K V K  K   V  S+   E+ + MN +   + R +  G     SH
Sbjct:    2 VVKAAEIAPAAYSSNKSSSAVTKEDDLTYDLGNLAAYDTHPFQVKNLSDENE--LKAYARDSVQLLINHVFELPRQMTDMGPMAQLPVPTTVIPREKPLPKEKVETRWEKFAREKGIKNKKEGRMVWDEAKQIWAPKWGYKRANDDSGDWAM-PVKAGADPYADPWTEKKQEKAERVQKNLRNQANNLKQGRGKQPAFPVSK----------------------TPL-GVPVELLNT----------------DDKKL-KQRGKEGTKAALQKVQFSTASMGKFDKKREGEGERKHVGKRNKFLSVTGSEK-TEKERSMNVLQHLLGREENKGKAKAASH 297          
BLAST of EWM29024.1 vs. NCBI_GenBank
Match: gi|566031352|gb|ETI54263.1| (hypothetical protein F443_02889 [Phytophthora parasitica P1569])

HSP 1 Score: 197.208 bits (500), Expect = 1.004e-56
Identity = 131/337 (38.87%), Postives = 175/337 (51.93%), Query Frame = 0
Query:    8 VVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAASEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGKS 344
            VVKA ++AP AY   ++++  K DDL YDL +LAA D+HP     F    EK L   A   VQ ++N +FELP E S+ GP+  LP   T +PR KPLP+ +  T+WEKFAKEKGI K+K+SR V+DE   EW   WGY+RA   ++D A VE+K G+    DPWT+ ++ K +RV KNL+ QA N   GRG  +                    A  A   P    G+PV+L  T                   A  K+RGK    K LE  Q STAS+GKFD    GE E+K+K  R            E+ + MN++   + R +  G   GK+
Sbjct:    2 VVKASEIAPAAYAEGSTSNVQKEDDLTYDLGNLAAFDTHP-----FTYQNEKELALHARENVQLLINHIFELPREMSDMGPLAQLPAPETVIPREKPLPKPKVETKWEKFAKEKGIEKRKKSRKVFDEATGEWSHTWGYQRAGEDMKDWA-VEMKEGDME--DPWTKRKQEKRSRVDKNLRAQANNLKQGRGKQL--------------------AGIAGRTPT---GIPVELMNT-----------------DDAKAKQRGKEGTNKTLEKVQFSTASMGKFDKMREGESERKIKGKRNHFLPTTGAETTEKERSMNALKRVLGREENAGKHKGKT 290          
The following BLAST results are available for this feature:
BLAST of EWM29024.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111542|gb|EWM29024.1|0.000e+0100.00ribosome biogenesis regulatory protein [Nannochlor... [more]
gi|298707303|emb|CBJ25930.1|5.900e-7241.89Ribosome biogenesis regulatory protein homolog [Ec... [more]
gi|1173947419|gb|OQR95722.1|3.103e-6340.99ribosome biogenesis regulatory protein [Thraustoth... [more]
gi|695453323|ref|XP_009536175.1|2.326e-5839.47hypothetical protein PHYSODRAFT_526169 [Phytophtho... [more]
gi|1173950229|gb|OQR98206.1|4.641e-5839.57ribosome biogenesis regulatory protein [Achlya hyp... [more]
gi|675182393|ref|XP_008900081.1|2.673e-5738.87hypothetical protein PPTG_07556 [Phytophthora para... [more]
gi|570335081|gb|ETO83029.1|2.839e-5738.87hypothetical protein F444_02901 [Phytophthora para... [more]
gi|570959116|gb|ETP24095.1|3.930e-5738.87hypothetical protein F441_02865 [Phytophthora para... [more]
gi|673041343|ref|XP_008874632.1|8.489e-5739.71hypothetical protein H310_10139 [Aphanomyces invad... [more]
gi|566031352|gb|ETI54263.1|1.004e-5638.87hypothetical protein F443_02889 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1652rna1652Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications