EWM29033.1, cds1639 (CDS) Nannochloropsis gaditana

Overview
NameEWM29033.1
Unique Namecds1639
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1143376..1143808 +
Alignment locationCM002457.1:1144533..1144552 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29033.1
Producthistone-lysine n- h3 lysine-36 and h4 lysine-20 specific
Orig transcript idgnl|cribi|Naga_100071g12.7951.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1143376..1143808 +
CM002457.1supercontigCM002457.1:1144533..1144552 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0005102signaling receptor binding
GO:0140110transcription regulator activity
GO:0016740transferase activity
GO:0003677DNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003616Post-SET_dom
IPR001214SET_dom
Homology
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|585111551|gb|EWM29033.1| (histone-lysine n- h3 lysine-36 and h4 lysine-20 specific [Nannochloropsis gaditana])

HSP 1 Score: 310.842 bits (795), Expect = 2.652e-107
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query:    1 MVIQQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNCIRVLWP 150
            MVIQQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNCIRVLWP
Sbjct:    1 MVIQQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNCIRVLWP 150          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|299116669|emb|CBN74814.1| (Whsc1 protein [Ectocarpus siliculosus])

HSP 1 Score: 174.481 bits (441), Expect = 1.109e-47
Identity = 88/153 (57.52%), Postives = 106/153 (69.28%), Query Frame = 0
Query:    2 VIQQGKFPATEVFRT-QGRGWALRTREE--VEKGTLLIEYRGEVVTMEEAQTRMRSM-------SAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
             IQ   FPATEVFRT +GRGW LR  EE   E GTLL EY GEV+ M+E + R+R +       S+G D+YFA+L+G LVLD GPMG EARFANHSC+PNC++QKW   GE  ++LVAAR +  GEE+TYNYQ DTL G   +Q C CG   C
Sbjct:  326 AIQTKTFPATEVFRTFEGRGWGLRLAEERGAEAGTLLHEYLGEVIMMDECRRRLRKVGRKGVEGSSG-DFYFASLDGNLVLDGGPMGGEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGEELTYNYQADTLGGFVERQKCLCGEPQC 477          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|676385149|ref|XP_009035853.1| (hypothetical protein AURANDRAFT_13518, partial [Aureococcus anophagefferens] >gi|323453948|gb|EGB09819.1| hypothetical protein AURANDRAFT_13518, partial [Aureococcus anophagefferens])

HSP 1 Score: 133.265 bits (334), Expect = 2.971e-36
Identity = 71/147 (48.30%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    1 MVIQQGKFPATEVFRT--QGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQV-DTLAGMFGKQACRCGAKNC 144
             VIQ+  FP  E+F T    RG+ LR R +V+ GT+L EYRGEV+   E Q R  +  A   +Y AAL   L +DAG  G+ ARFANHSCAPNC L+KWR G E  ++LVA   + A  E+TY+Y     +A +   Q CRCGA NC
Sbjct:   64 TVIQRRAFPPMEIFDTGDDNRGFGLRCRVDVKAGTMLGEYRGEVIDAAELQRRKETRDAADPFYIAALGDGLAIDAGRKGAYARFANHSCAPNCALEKWRVGEEPRLVLVARGAIPANTELTYDYNAGGGVADVTVAQQCRCGAPNC 210          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|1176075294|ref|XP_020607640.1| (histone-lysine N-methyltransferase NSD2-like isoform X3 [Orbicella faveolata])

HSP 1 Score: 140.198 bits (352), Expect = 1.319e-35
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    4 QQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            Q+ ++   E FRT  RGW LR +E+V+KG  +IEY GE++     Q R+R      +YY   ++ + ++DAGPMG+ +RF NHSC PNC  QKW   G+  + L A+R + AGEE+T++YQ+D L     K+ C CGAKNC
Sbjct:  878 QKRQYVDCEPFRTLHRGWGLRCKEDVKKGQFVIEYVGELIDEATCQERVRKGEDITNYYMLTIDKDCIIDAGPMGNLSRFMNHSCDPNCETQKWTVNGDVRVGLFASREIKAGEELTFDYQLDCLGNE--KKKCHCGAKNC 1016          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|1176075290|ref|XP_020607638.1| (histone-lysine N-methyltransferase NSD2-like isoform X1 [Orbicella faveolata] >gi|1176075292|ref|XP_020607639.1| histone-lysine N-methyltransferase NSD2-like isoform X2 [Orbicella faveolata])

HSP 1 Score: 139.813 bits (351), Expect = 1.686e-35
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    4 QQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            Q+ ++   E FRT  RGW LR +E+V+KG  +IEY GE++     Q R+R      +YY   ++ + ++DAGPMG+ +RF NHSC PNC  QKW   G+  + L A+R + AGEE+T++YQ+D L     K+ C CGAKNC
Sbjct:  878 QKRQYVDCEPFRTLHRGWGLRCKEDVKKGQFVIEYVGELIDEATCQERVRKGEDITNYYMLTIDKDCIIDAGPMGNLSRFMNHSCDPNCETQKWTVNGDVRVGLFASREIKAGEELTFDYQLDCLGNE--KKKCHCGAKNC 1016          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|1005434647|ref|XP_015754821.1| (PREDICTED: histone-lysine N-methyltransferase NSD2-like isoform X2 [Acropora digitifera])

HSP 1 Score: 139.813 bits (351), Expect = 1.774e-35
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    4 QQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            Q+ ++   E FRT  RGW LR +E+V+KG  +IEY GE++     Q R++      +YY   ++ + ++DAGPMG+ +RF NHSC PNC  QKW   GE  + L A+R + AGEE+T++YQ+D L     K+ C CGAKNC
Sbjct:  965 QKRQYVDCEPFRTLHRGWGLRCKEDVKKGQFVIEYVGELIDDATCQERVQKGEDITNYYMLTIDKDCIIDAGPMGNLSRFMNHSCDPNCETQKWTVNGEVRVGLFASREIMAGEELTFDYQLDCLGNE--KKKCHCGAKNC 1103          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|1005434645|ref|XP_015754820.1| (PREDICTED: histone-lysine N-methyltransferase NSD2-like isoform X1 [Acropora digitifera])

HSP 1 Score: 139.043 bits (349), Expect = 2.719e-35
Identity = 63/141 (44.68%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    4 QQGKFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            Q+ ++   E FRT  RGW LR +E+V+KG  +IEY GE++     Q R++      +YY   ++ + ++DAGPMG+ +RF NHSC PNC  QKW   GE  + L A+R + AGEE+T++YQ+D L     K+ C CGAKNC
Sbjct:  920 QKRQYVDCEPFRTLHRGWGLRCKEDVKKGQFVIEYVGELIDDATCQERVQKGEDITNYYMLTIDKDCIIDAGPMGNLSRFMNHSCDPNCETQKWTVNGEVRVGLFASREIMAGEELTFDYQLDCLGNE--KKKCHCGAKNC 1058          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|315364634|pdb|3OOI|A (Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine)

HSP 1 Score: 129.028 bits (323), Expect = 2.233e-34
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 0
Query:    7 KFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQ--DYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            ++P  E+FRT  RGW LRT+ +++KG  + EY GE++  EE + R+R        ++Y   L+ + ++DAGP G+ ARF NH C PNC  QKW   G+  + L A   + AG E+T+NY ++ L    GK  C+CGA NC
Sbjct:   90 QYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGN--GKTVCKCGAPNC 227          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|736250468|ref|XP_010787857.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like, partial [Notothenia coriiceps])

HSP 1 Score: 127.102 bits (318), Expect = 2.996e-34
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 0
Query:    7 KFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQ--DYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            ++   E+FRT  RGW LR   +++KG  + EY GEV+  EE ++R+R        ++Y   L+ + ++DAGP G+EARF NH C PNC  QKW   G+  + L A   + AG E+T+NY ++ L    GK  C+CGA NC
Sbjct:   34 QYSQVEIFRTLSRGWGLRCVHDIKKGHFVSEYVGEVIDEEECRSRIRQAQETDICNFYMLTLDKDRIIDAGPKGNEARFMNHCCQPNCETQKWTVSGDTRVGLFALIDVAAGTELTFNYNLECLGN--GKTVCKCGAPNC 171          
BLAST of EWM29033.1 vs. NCBI_GenBank
Match: gi|1188108524|ref|XP_020776298.1| (histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific [Boleophthalmus pectinirostris])

HSP 1 Score: 134.806 bits (338), Expect = 8.776e-34
Identity = 59/140 (42.14%), Postives = 86/140 (61.43%), Query Frame = 0
Query:    7 KFPATEVFRTQGRGWALRTREEVEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQ--DYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRLGAGEEVTYNYQVDTLAGMFGKQACRCGAKNC 144
            ++ + E+FRT  RGW LR   +++KG  + EY GEV+  EE ++R+R        ++Y   L+ + ++DAGP G+EARF NHSC PNC  QKW   G+  + L A   + AG E+T+NY ++ L    GK  C+CGA NC
Sbjct: 1910 EYSSVEIFRTLSRGWGLRCSHDIKKGQFVSEYVGEVIDEEECRSRIRDAQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCRPNCETQKWTVSGDTRVGLFALEDIPAGTELTFNYNLECLGN--GKTVCKCGAPNC 2047          
The following BLAST results are available for this feature:
BLAST of EWM29033.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111551|gb|EWM29033.1|2.652e-107100.00histone-lysine n- h3 lysine-36 and h4 lysine-20 sp... [more]
gi|299116669|emb|CBN74814.1|1.109e-4757.52Whsc1 protein [Ectocarpus siliculosus][more]
gi|676385149|ref|XP_009035853.1|2.971e-3648.30hypothetical protein AURANDRAFT_13518, partial [Au... [more]
gi|1176075294|ref|XP_020607640.1|1.319e-3544.68histone-lysine N-methyltransferase NSD2-like isofo... [more]
gi|1176075290|ref|XP_020607638.1|1.686e-3544.68histone-lysine N-methyltransferase NSD2-like isofo... [more]
gi|1005434647|ref|XP_015754821.1|1.774e-3544.68PREDICTED: histone-lysine N-methyltransferase NSD2... [more]
gi|1005434645|ref|XP_015754820.1|2.719e-3544.68PREDICTED: histone-lysine N-methyltransferase NSD2... [more]
gi|315364634|pdb|3OOI|A2.233e-3441.43Chain A, Crystal Structure Of Human Histone-Lysine... [more]
gi|736250468|ref|XP_010787857.1|2.996e-3441.43PREDICTED: histone-lysine N-methyltransferase, H3 ... [more]
gi|1188108524|ref|XP_020776298.1|8.776e-3442.14histone-lysine N-methyltransferase, H3 lysine-36 a... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1643rna1643Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications