EWM29078.1, cds1601 (CDS) Nannochloropsis gaditana

Overview
NameEWM29078.1
Unique Namecds1601
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:1043039..1043077 -
Alignment locationCM002457.1:1042715..1042852 -
Alignment locationCM002457.1:1041868..1042452 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29078.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100024g32.4336.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:1043039..1043077 -
CM002457.1supercontigCM002457.1:1042715..1042852 -
CM002457.1supercontigCM002457.1:1041868..1042452 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008564DUF846_euk
Homology
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|585111597|gb|EWM29078.1| (hypothetical protein Naga_100024g32 [Nannochloropsis gaditana])

HSP 1 Score: 514.998 bits (1325), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
Query:    1 MMEGHAQGDDELQFIRVPETSVSNQASGQTPYAPMGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSHV 253
            MMEGHAQGDDELQFIRVPETSVSNQASGQTPYAPMGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSHV
Sbjct:    1 MMEGHAQGDDELQFIRVPETSVSNQASGQTPYAPMGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSHV 253          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|553177004|ref|XP_005852425.1| (putative fam18-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422296107|gb|EKU23406.1| putative fam18-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 358.607 bits (919), Expect = 4.814e-124
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:   35 MGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQ 210
            MGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQ
Sbjct:    1 MGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQ 176          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|669167926|ref|XP_008619492.1| (hypothetical protein SDRG_15106 [Saprolegnia diclina VS20] >gi|530728856|gb|EQC27098.1| hypothetical protein SDRG_15106 [Saprolegnia diclina VS20])

HSP 1 Score: 244.588 bits (623), Expect = 6.353e-78
Identity = 124/252 (49.21%), Postives = 165/252 (65.48%), Query Frame = 0
Query:    7 QGDDELQFIRVPETSVSNQASGQTPYAPMGAAPASGPPPPPA-----GDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSHV 253
            +    L+FI V E +VS      +P +    A +S P  P A     G   A ++Q++HPVAA FH +FKALA+  YLFGG FS++FVF+ V+CILLLAFDFWTVKNV+GRLLVGLRWWN V +DG++EW+FES E+  E+ P DA++FWTGLY  P VW +F L+A+LKF+++W +I  VAL+LS ANIVGY KCS D K K+++++   A +       S+  S I ST G    G   A     PPS +
Sbjct:    5 EKSKALEFIEVDEPTVS------SPRSRATTASSSAPASPQASATLLGSVTASVRQAKHPVAAVFHVLFKALALLAYLFGGIFSNSFVFVFVICILLLAFDFWTVKNVSGRLLVGLRWWNRVNEDGTSEWIFESHEDMTELDPLDAKVFWTGLYGAPGVWVLFLLIAVLKFNLEWALIAIVALMLSAANIVGYTKCSKDAKNKMKSMMASGALEAL----QSSTGSTILSTLGGMAFGNAPARPNARPPSEI 246          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|813184490|ref|XP_012206417.1| (hypothetical protein SPRG_11997 [Saprolegnia parasitica CBS 223.65] >gi|641528647|gb|KDO22860.1| hypothetical protein SPRG_11997 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 244.202 bits (622), Expect = 1.026e-77
Identity = 125/255 (49.02%), Postives = 166/255 (65.10%), Query Frame = 0
Query:    6 AQGDDE--LQFIRVPETSVSNQASGQTPYAPMGAAPASGPPPPPA-----GDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSHV 253
            + GD    L+FI V E +VS      +P +      +S P  P A     G   A ++Q++HPVAA FH +FKALA+  YLFGG FS++FVF+ V+CILLLAFDFWTVKNV+GRLLVGLRWWN V +DG++EW+FES E+  E+ P DA++FWTGLY  P VW +F L+A+LKF+++W +I  VAL+LS ANIVGY KCS D K K+++++   A +       S+  S I ST G    G   A     PPS +
Sbjct:    2 SSGDKSKALEFIEVDEPAVS------SPRSRAATVSSSAPASPQASATLLGSVTASVRQAKHPVAAVFHVLFKALALLAYLFGGLFSNSFVFVFVICILLLAFDFWTVKNVSGRLLVGLRWWNRVNEDGTSEWIFESHEDMTELDPLDAKVFWTGLYGAPCVWVLFLLIAVLKFNLEWALIAIVALMLSMANIVGYTKCSKDAKNKMKSMMASGALEAL----QSSTGSTILSTLGGMAFGSAPARPNARPPSEI 246          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|813219522|ref|XP_012211138.1| (hypothetical protein SPRG_16439 [Saprolegnia parasitica CBS 223.65] >gi|641523238|gb|KDO18153.1| hypothetical protein SPRG_16439 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 241.506 bits (615), Expect = 1.083e-76
Identity = 124/252 (49.21%), Postives = 164/252 (65.08%), Query Frame = 0
Query:    6 AQGDDE--LQFIRVPETSVSNQA--SGQTPYAPMGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSHV 253
            + GD    L+FI V E + S  A  S   P +P  +A          G   A ++Q++HPVAA FH +FKALA+  YLFGG FS++FVF+ V+CILLLAFDFWTVKNV+GRLLVGLRWWN V +DG++EW+FES E+  E+ P DA++FWTGLY  P VW +F L+A+LKF+++W +I  VAL+LS ANIVGY KCS D K K+++++   A +       S+  S I ST G    G   A     PPS +
Sbjct:    2 SSGDKSKALEFIEVDEPTRSRAATVSSSAPASPQASATL-------LGSVTASVRQAKHPVAAVFHVLFKALALLAYLFGGLFSNSFVFVFVICILLLAFDFWTVKNVSGRLLVGLRWWNRVNEDGTSEWIFESHEDMTELDPLDAKVFWTGLYGAPCVWVLFLLIAVLKFNLEWALIAIVALMLSTANIVGYTKCSKDAKNKMKSMMASGALEAL----QSSTGSTILSTLGGMAFGSAPARPNARPPSEI 242          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|673047935|ref|XP_008877928.1| (hypothetical protein H310_12582 [Aphanomyces invadans] >gi|574466557|gb|ETV93586.1| hypothetical protein H310_12582 [Aphanomyces invadans])

HSP 1 Score: 233.032 bits (593), Expect = 2.867e-73
Identity = 119/247 (48.18%), Postives = 160/247 (64.78%), Query Frame = 0
Query:   11 ELQFIRVP-ETSVSNQASGQTPYAPMGAAPASGPPPPPAGDAL-----AFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFIS--STFGQQQQGGGNAEGPHGP 249
            +L+FI VP E   S   S ++      ++  + P   PA   L       +++++HPVAAAFH  FK LAI  Y+ GGF S++FVFI V+C+LLLAFDFWTVKNV+GRLLVGLRWWN + +DGSN+WVFES+E+  EI P DA++FWT LY  P+ W++F LVA+LK +V+W +I  VAL LSGAN+VGY KCS D K K+ +++   A +    L +SA  SF+S  S        GG+      P
Sbjct:    7 QLEFIDVPAEPQDSPVTSPRSRTTTASSSVENSPRATPATAGLLSGVTESVRKAKHPVAAAFHLFFKFLAIGVYILGGFVSNSFVFIFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNDWVFESLEDMSEIDPLDAKIFWTALYGAPVAWALFLLVAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKSKMHSMMTAGALE---ALNSSAGASFLSTISNLAFSNAAGGSGRSSRQP 250          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|698821755|ref|XP_009843906.1| (hypothetical protein H257_16978 [Aphanomyces astaci] >gi|698821757|ref|XP_009843907.1| hypothetical protein, variant [Aphanomyces astaci] >gi|574100965|gb|ETV66535.1| hypothetical protein H257_16978 [Aphanomyces astaci] >gi|574100966|gb|ETV66536.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 232.261 bits (591), Expect = 7.067e-73
Identity = 116/246 (47.15%), Postives = 161/246 (65.45%), Query Frame = 0
Query:   11 ELQFIRVP-ETSVSNQASGQTPYAPMGAAPASGPPPPPAGDAL-----AFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISS-TFGQQQQGGGNAEGPHGP 249
            +L+FI V  E   S   S ++  A   ++  + P   PA   L       +++++HPVAA+FH +FK LA+  Y+ GGF S++FVFI V+C+LLLAFDFWTVKNV+GRLLVGLRWWN + +DGSNEWVFES+E+  EI P DA++FWT LY  P VW++F LVA+LKF+V+W +I  VAL LSGAN+VGY KCS D K K+ +++   A +       +++ S I++  F     G G +     P
Sbjct:    7 KLEFIDVSAEPHDSPVTSPRSRAATASSSVENSPRAVPASAGLLSGVTESVRKAKHPVAASFHLLFKLLALGVYILGGFVSNSFVFIFVICVLLLAFDFWTVKNVSGRLLVGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTALYGAPGVWTLFLLVAVLKFNVEWALIAIVALTLSGANVVGYTKCSKDAKSKMHSMMTTGALEALHSSAGASILSTITNLAFSNAANGSGRSSSRQQP 252          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|301089432|ref|XP_002895017.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103999|gb|EEY62051.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 223.016 bits (567), Expect = 8.678e-70
Identity = 110/198 (55.56%), Postives = 139/198 (70.20%), Query Frame = 0
Query:   55 IKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVVQGAAFKTAFGLGTSAVQSFISSTFGQQQQGGGNAEGPHGPPSH 252
            +  ++HPVAA FH  FK LA+  YLFG  F+S+FVFI VVCILLLAFDFW VKNVTGRLLVGLRWWN V +DG++EWVFES E+  EI P D+R+FWTGLY  P +W +  +VALLKF+V+W +IV VA+ LSGANI+GY +C  D K+K+Q+++   A   AFG   S+  S I ST G    G   +E     P+ 
Sbjct:   26 VTSAKHPVAAFFHLFFKGLALLLYLFGSIFTSDFVFIFVVCILLLAFDFWAVKNVTGRLLVGLRWWNKVNEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGAPALWVMLLIVALLKFNVEWALIVVVAVALSGANIIGYTRCKKDAKQKMQSLMSQGALG-AFG---SSAGSSIMSTIGGLALGRDLSELAAKKPTK 219          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|675186079|ref|XP_008901924.1| (hypothetical protein PPTG_08928 [Phytophthora parasitica INRA-310] >gi|566029272|gb|ETI52183.1| hypothetical protein F443_04632 [Phytophthora parasitica P1569] >gi|567966866|gb|ETK92057.1| hypothetical protein L915_04508 [Phytophthora parasitica] >gi|568024591|gb|ETL98621.1| hypothetical protein L917_04351 [Phytophthora parasitica] >gi|568098181|gb|ETN12916.1| hypothetical protein PPTG_08928 [Phytophthora parasitica INRA-310] >gi|570332997|gb|ETO80945.1| hypothetical protein F444_04667 [Phytophthora parasitica P1976])

HSP 1 Score: 223.402 bits (568), Expect = 1.731e-69
Identity = 113/216 (52.31%), Postives = 150/216 (69.44%), Query Frame = 0
Query:    1 MMEGHAQGDDELQFIRV-PETSVSN--QASGQTPYAPMGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVV-QGA 212
            MM    +  +EL+FI V PET  +N   ++ ++  A   A+P +             +  ++HPVAA FH  FK LA+  YLFG  F SNFVFI VVCILLLAFDFWTVKNVTGRLLVGLRWWN + +DG++EWVFES E+  EI P D+R+FWTGLY  P +W +  ++A+LKF+V+W +IV VA+ LSGANI+GY +C  D K+K+Q+++ QGA
Sbjct:    1 MMAEDKKPQEELEFISVEPETQPTNVPASTERSTNAKAAASPKASDKEALLTSMRKVVTSAKHPVAAFFHLFFKGLALLLYLFGSIFISNFVFIFVVCILLLAFDFWTVKNVTGRLLVGLRWWNKINEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGAPALWVMLLIIAVLKFNVEWALIVVVAVALSGANIIGYTRCKKDAKQKMQSLMSQGA 216          
BLAST of EWM29078.1 vs. NCBI_GenBank
Match: gi|570992391|gb|ETP49903.1| (hypothetical protein F442_04681 [Phytophthora parasitica P10297])

HSP 1 Score: 223.402 bits (568), Expect = 2.199e-69
Identity = 113/216 (52.31%), Postives = 150/216 (69.44%), Query Frame = 0
Query:    1 MMEGHAQGDDELQFIRV-PETSVSN--QASGQTPYAPMGAAPASGPPPPPAGDALAFIKQSRHPVAAAFHFVFKALAIFFYLFGGFFSSNFVFICVVCILLLAFDFWTVKNVTGRLLVGLRWWNNVRDDGSNEWVFESVENPGEIHPADARLFWTGLYVTPIVWSVFFLVALLKFSVQWLVIVFVALVLSGANIVGYYKCSNDQKKKVQNVV-QGA 212
            MM    +  +EL+FI V PET  +N   ++ ++  A   A+P +             +  ++HPVAA FH  FK LA+  YLFG  F SNFVFI VVCILLLAFDFWTVKNVTGRLLVGLRWWN + +DG++EWVFES E+  EI P D+R+FWTGLY  P +W +  ++A+LKF+V+W +IV VA+ LSGANI+GY +C  D K+K+Q+++ QGA
Sbjct:    1 MMAEDKKPQEELEFISVEPETQPTNVPASTERSTNAKAAASPKASDKEALLTSMRKVVTSAKHPVAAFFHLFFKGLALLLYLFGSIFISNFVFIFVVCILLLAFDFWTVKNVTGRLLVGLRWWNKINEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGAPALWVMLLIIAVLKFNVEWALIVVVAVALSGANIIGYTRCKKDAKQKMQSLMSQGA 216          
The following BLAST results are available for this feature:
BLAST of EWM29078.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111597|gb|EWM29078.1|0.000e+0100.00hypothetical protein Naga_100024g32 [Nannochlorops... [more]
gi|553177004|ref|XP_005852425.1|4.814e-124100.00putative fam18-like protein, partial [Nannochlorop... [more]
gi|669167926|ref|XP_008619492.1|6.353e-7849.21hypothetical protein SDRG_15106 [Saprolegnia dicli... [more]
gi|813184490|ref|XP_012206417.1|1.026e-7749.02hypothetical protein SPRG_11997 [Saprolegnia paras... [more]
gi|813219522|ref|XP_012211138.1|1.083e-7649.21hypothetical protein SPRG_16439 [Saprolegnia paras... [more]
gi|673047935|ref|XP_008877928.1|2.867e-7348.18hypothetical protein H310_12582 [Aphanomyces invad... [more]
gi|698821755|ref|XP_009843906.1|7.067e-7347.15hypothetical protein H257_16978 [Aphanomyces astac... [more]
gi|301089432|ref|XP_002895017.1|8.678e-7055.56conserved hypothetical protein [Phytophthora infes... [more]
gi|675186079|ref|XP_008901924.1|1.731e-6952.31hypothetical protein PPTG_08928 [Phytophthora para... [more]
gi|570992391|gb|ETP49903.1|2.199e-6952.31hypothetical protein F442_04681 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1605rna1605Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications