EWM29169.1, cds1535 (CDS) Nannochloropsis gaditana

Overview
NameEWM29169.1
Unique Namecds1535
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:888202..888297 -
Alignment locationCM002457.1:887909..888031 -
Alignment locationCM002457.1:887238..887703 -
Alignment locationCM002457.1:886681..887078 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29169.1
Productaureochrome1-like protein
Orig transcript idgnl|cribi|Naga_100007g32.6496.mrna
GeneAUR2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:888202..888297 -
CM002457.1supercontigCM002457.1:887909..888031 -
CM002457.1supercontigCM002457.1:887238..887703 -
CM002457.1supercontigCM002457.1:886681..887078 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0007165signal transduction
GO:0000160phosphorelay signal transduction system
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0003677DNA binding
GO:0000155phosphorelay sensor kinase activity
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR000700PAS-assoc_C
IPR000014PAS
IPR004827bZIP
IPR001610PAC
Homology
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|585111689|gb|EWM29169.1| (aureochrome1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 737.258 bits (1902), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query:    1 MAAIMLQQPQCKVPTSLLPVYSRAQGGQSGDLDLNMEQLLEAYVLDEGMDLDFLDGTNISDTSKDTAPNNISDLDDLDEMADGVGIDSEGDIVKTGGKSKKRKTSGWSGSGSSIPRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360
            MAAIMLQQPQCKVPTSLLPVYSRAQGGQSGDLDLNMEQLLEAYVLDEGMDLDFLDGTNISDTSKDTAPNNISDLDDLDEMADGVGIDSEGDIVKTGGKSKKRKTSGWSGSGSSIPRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED
Sbjct:    1 MAAIMLQQPQCKVPTSLLPVYSRAQGGQSGDLDLNMEQLLEAYVLDEGMDLDFLDGTNISDTSKDTAPNNISDLDDLDEMADGVGIDSEGDIVKTGGKSKKRKTSGWSGSGSSIPRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001011757|gb|AML76382.1| (putative LOV domain-containing protein [Punctaria latifolia])

HSP 1 Score: 258.455 bits (659), Expect = 3.125e-79
Identity = 130/265 (49.06%), Postives = 173/265 (65.28%), Query Frame = 0
Query:   96 GGKSKKRKTSGWSGSGSSIPRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360
            GG +++R +S               EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV  L+R+N RLKSIV  +    A ++  +C  ++PS+V +S  +A+ VLD+  F L+KALQ++Q SF VTDP +PDNPIV+AS  F+E+TGYS +QVLGRNCRFLQGP TD   VA+IRKGI EG+DTSV L  YK DGT FWN  FVA LR+   +++ +VG Q  +D+               E     VA + +GE +E E  +ED
Sbjct:  165 GGVTRRRSSS-------------KEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVARLQRENERLKSIVSTRCPGSAGDIFLSCASKMPSMVADSAGQATAVLDQSGFLLVKALQSSQPSFCVTDPQMPDNPIVYASDSFIELTGYSRAQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEDKIINYVGIQHPLDK---------------EPSPEVVACINNGEEQEHESAQED 401          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001016320|gb|AML78436.1| (putative LOV domain-containing protein [Saccharina sculpera])

HSP 1 Score: 256.529 bits (654), Expect = 9.942e-79
Identity = 126/238 (52.94%), Postives = 166/238 (69.75%), Query Frame = 0
Query:   93 VKTGGKSKKRKTSGWSGSGSSIPRKKS---HEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR-PLEEI 326
            V+ G  +  RKT+        + R++S    EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV  L+R+N RLK IV  +  D   E+L +C  R+PS+V +   +A+ +LD+  F L+KALQ++Q SF VTDP +PDNPIV+AS+ F+E+TGY  SQVLGRNCRFLQGP TD   VA+IRKGI EG DTSV L  YK DGT FWN  FVA LR+   +++ +VG Q  +D+ P  E+
Sbjct:  135 VEGGAGATFRKTAA-----GGVTRRRSSSKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVAGLQRENERLKGIVTSRCPDTVGEILLSCASRVPSVVADCAGQATALLDQSGFLLVKALQSSQPSFCVTDPQMPDNPIVYASESFIELTGYERSQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGTDTSVHLRQYKADGTVFWNHVFVAALRNSERKIINYVGIQHPLDKEPSPEV 367          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001017294|gb|AML78877.1| (putative LOV domain-containing protein [Scytosiphon dotyi])

HSP 1 Score: 251.136 bits (640), Expect = 5.505e-78
Identity = 133/267 (49.81%), Postives = 176/267 (65.92%), Query Frame = 0
Query:   97 GKSKKRKTSGWSGSGSSIPRKKS--HEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGAC-TMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360
            G++  RKT+    SG    R+ S   EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV  L+R+N RLK+IV  +    A E+L +C + + PS+V +   +A+ +LD+  F L+KALQ++Q SF VTDP +PDNPIV+AS  F+E+TGY  SQVLGRNCRFLQGP TD   VA+IRKGI EG+DTSV L  YK DGT FWN  FVA LR+   +++ +VG Q  +D+               E   + VA + +GE   E  +EED
Sbjct:   36 GRTTLRKTA----SGGVTRRRASSKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVARLQRENERLKNIVTSRCPGSAGEILVSCASSKTPSMVADCARQATALLDQSGFLLVKALQSSQPSFCVTDPQMPDNPIVYASDSFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEHKIINYVGIQHPLDK---------------EPSAQVVACINNGEERMESIQEED 283          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001014239|gb|AML77495.1| (putative LOV domain-containing protein [Scytosiphon lomentaria])

HSP 1 Score: 252.292 bits (643), Expect = 5.765e-77
Identity = 134/268 (50.00%), Postives = 178/268 (66.42%), Query Frame = 0
Query:   97 GKSKKRKTSGWSGSGSSIPRKKS--HEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGAC-TMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR-PLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360
            G++  RKT+    SG    R+ S   EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV  L+R+N RLK+IV  +  D   E+L +C + + PS+VT+   +A+ +LD+  F L+KALQ++Q SF VTDP +PDNPIV+AS  F+E+TGY  SQVLGRNCRFLQGP TD   VA+IRKGI EG+DTSV L  YK DGT FWN  FVA LR+   +++ +VG Q  +D+ P  E+                VA + +GE   +  +EED
Sbjct:  154 GRTTLRKTA----SGGVTRRRASSKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVARLQRENERLKNIVTSRCPDSVGEILMSCASSKTPSMVTDCTRQATALLDQSGFLLVKALQSSQPSFCVTDPQMPDNPIVYASDSFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSQHKIINYVGIQHPLDKEPSAEV----------------VACINNGEERMDAIQEED 401          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|242345215|dbj|BAH80321.1| (aureochrome2-like protein [Fucus evanescens])

HSP 1 Score: 251.521 bits (641), Expect = 7.675e-77
Identity = 114/201 (56.72%), Postives = 153/201 (76.12%), Query Frame = 0
Query:  121 EQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR 321
            EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV DL+ +N RLK I+  + A+ ++E++ +C   +PS+V +   +A+ +L++ DF L+KALQ++Q SF VTDP LPDNPIV+AS  F+E+TGY  SQVLGRNCRFLQGP TD   VA+IRKGI EG DTSV L  YK DGT FWN  FVA LR+ + +++ +VG Q  +++
Sbjct:  160 EQAKKRRERNRVLARRTRLRKKFFFQSLQQQVNDLQYENERLKGIINTRCANNSAEIIRSCVSHVPSMVADCANQATALLEQSDFLLVKALQSSQPSFCVTDPQLPDNPIVYASNTFIELTGYDRSQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGKDTSVFLRQYKADGTVFWNHVFVAALRNNDHKIINYVGIQHPLEK 360          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001017653|gb|AML79041.1| (putative LOV domain-containing protein [Petalonia fascia])

HSP 1 Score: 251.521 bits (641), Expect = 1.328e-76
Identity = 128/243 (52.67%), Postives = 168/243 (69.14%), Query Frame = 0
Query:   88 SEGDIVKTGGKSKKRKTSGWSGSGSSIPRKKS--HEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGAC-TMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR-PLEEI 326
            + G      G++  RKT+    SG    R+ S   EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV  L+R+N RLKSIV  +    A E+L +C +   PS+VT+   +A+ +LD+  F L+KALQ++Q SF VTDP +PDNPIV+AS  F+++TGY  SQVLGRNCRFLQGP TD   VA+IRKGI EG+DTSV L  YK DGT FWN  FVA LR+   +++ +VG Q  +D+ P  E+
Sbjct:  146 APGTTTAVAGRTTLRKTA----SGGVTRRRASSKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVARLQRENERLKSIVTTRCPGSAGEILVSCASSSTPSMVTDCARQATALLDQSGFLLVKALQSSQPSFCVTDPQMPDNPIVYASDSFIDLTGYDRSQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEHKIINYVGIQHPLDKEPSAEV 384          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|299115347|emb|CBN74167.1| (aureochrome 2 [Ectocarpus siliculosus])

HSP 1 Score: 251.521 bits (641), Expect = 1.464e-76
Identity = 118/207 (57.00%), Postives = 153/207 (73.91%), Query Frame = 0
Query:  121 EQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR-PLEEI 326
            EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV  L+R+N RLK IV  +  D   E+L +C  ++PS+V +   +A+ VLD+  F L+KALQ++Q SF VTDP +PDNPIV+AS  F+E+TGY  +QVLGRNCRFLQGP TD   VA+IRKGI EG+DTSV L  YK DGT FWN  FVA LR+   +++ +VG Q  +D+ P  E+
Sbjct:  185 EQAKKRRERNRVLARRTRLRKKFFFQSLQQQVARLQRENERLKGIVTTRCPDSVGEILMSCRSKMPSMVADCAGQATAVLDQSGFLLVKALQSSQPSFCVTDPQMPDNPIVYASDTFIELTGYDRAQVLGRNCRFLQGPDTDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEHKIINYVGIQHPLDKEPSPEV 391          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001014775|gb|AML77741.1| (putative LOV domain-containing protein [Sargassum fusiforme])

HSP 1 Score: 249.595 bits (636), Expect = 3.921e-76
Identity = 125/242 (51.65%), Postives = 167/242 (69.01%), Query Frame = 0
Query:   83 GVGIDSEGDIVKTGG-KSKKRKTSGWSGSGSSIPRKKS--HEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR 321
            G      G  V+T G  S  RKT+    SG    R+ S   EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV DL+ +N RLK I+  +  + + E+L +C+ R+ S+V +  ++A+  L + DF L+KALQ++Q SF VTDP LPDNPIV+AS  F+++TGY  SQVLGRNCRFLQGP TD   VA+IRKGI +G DTSV L  YK DGT FWN  FVA LR+ + +++ +VG Q  +++
Sbjct:  117 GTPSSQRGPKVQTSGVGSTVRKTA----SGGVTRRRSSSKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVADLQHENERLKGIITTRCPESSDEILRSCSPRVSSVVADCASQATAFLAQNDFLLVKALQSSQPSFCVTDPQLPDNPIVYASDNFIQLTGYERSQVLGRNCRFLQGPDTDPDAVAKIRKGIEQGTDTSVLLRQYKADGTVFWNHVFVAALRNNDHKIINYVGIQHPLEK 354          
BLAST of EWM29169.1 vs. NCBI_GenBank
Match: gi|1001018720|gb|AML79527.1| (putative LOV domain-containing protein [Sargassum thunbergii])

HSP 1 Score: 249.21 bits (635), Expect = 4.321e-76
Identity = 125/242 (51.65%), Postives = 167/242 (69.01%), Query Frame = 0
Query:   83 GVGIDSEGDIVKTGG-KSKKRKTSGWSGSGSSIPRKKS--HEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDR 321
            G      G  V+T G  S  RKT+    SG    R+ S   EQ ++RRERNR+LARRTRLRKKF F+SLQ+QV DL+ +N RLK I+  +  + + E+L +C+ R+ S+V +  ++A+  L + DF L+KALQ++Q SF VTDP LPDNPIV+AS  F+++TGY  SQVLGRNCRFLQGP TD   VA+IRKGI +G DTSV L  YK DGT FWN  FVA LR+ + +++ +VG Q  +++
Sbjct:  117 GTPSSQRGPKVQTSGVGSTVRKTA----SGGVTRRRSSSKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVADLQHENERLKGIITTRCPESSDEILRSCSPRVSSVVADCTSQATAFLAQNDFLLVKALQSSQPSFCVTDPQLPDNPIVYASDNFIQLTGYERSQVLGRNCRFLQGPDTDPDAVAKIRKGIEQGTDTSVLLRQYKADGTVFWNHVFVAALRNNDHKIINYVGIQHPLEK 354          
The following BLAST results are available for this feature:
BLAST of EWM29169.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111689|gb|EWM29169.1|0.000e+0100.00aureochrome1-like protein [Nannochloropsis gaditan... [more]
gi|1001011757|gb|AML76382.1|3.125e-7949.06putative LOV domain-containing protein [Punctaria ... [more]
gi|1001016320|gb|AML78436.1|9.942e-7952.94putative LOV domain-containing protein [Saccharina... [more]
gi|1001017294|gb|AML78877.1|5.505e-7849.81putative LOV domain-containing protein [Scytosipho... [more]
gi|1001014239|gb|AML77495.1|5.765e-7750.00putative LOV domain-containing protein [Scytosipho... [more]
gi|242345215|dbj|BAH80321.1|7.675e-7756.72aureochrome2-like protein [Fucus evanescens][more]
gi|1001017653|gb|AML79041.1|1.328e-7652.67putative LOV domain-containing protein [Petalonia ... [more]
gi|299115347|emb|CBN74167.1|1.464e-7657.00aureochrome 2 [Ectocarpus siliculosus][more]
gi|1001014775|gb|AML77741.1|3.921e-7651.65putative LOV domain-containing protein [Sargassum ... [more]
gi|1001018720|gb|AML79527.1|4.321e-7651.65putative LOV domain-containing protein [Sargassum ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1538rna1538Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications