EWM29114.1, cds1518 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|585111634|gb|EWM29114.1| (adp-ribosylation factor gtpase-activating protein agd14 [Nannochloropsis gaditana]) HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0 Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0
Query: 1 MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAEGTQSASASTASLPRQSIGGIGSRLEGPMSEIPDASTVKNLLDLESDCIPTGPARSFPTLLEPATVTSCTQFSERVARNGLSDRCPLTGSVGQTGAPKSSSSLMCTSTIAAPQPQDMQFGDFLGAFSPSNPTPGRTPAALAQPGSHSNQALNLNDDFGEFMSSPPSQGLSMSTQSMRPVPLTAPQPRPSMVAPRVQPEDPFAMLAPDRPTLASIPLSHLHAQKMHPVGLAPACVIGSGVLAPQVFSINAPHSSFQPGQVPLHMVMNATGAHGWKAGQQCTSQEPDPFADLDWRK 435
MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAEGTQSASASTASLPRQSIGGIGSRLEGPMSEIPDASTVKNLLDLESDCIPTGPARSFPTLLEPATVTSCTQFSERVARNGLSDRCPLTGSVGQTGAPKSSSSLMCTSTIAAPQPQDMQFGDFLGAFSPSNPTPGRTPAALAQPGSHSNQALNLNDDFGEFMSSPPSQGLSMSTQSMRPVPLTAPQPRPSMVAPRVQPEDPFAMLAPDRPTLASIPLSHLHAQKMHPVGLAPACVIGSGVLAPQVFSINAPHSSFQPGQVPLHMVMNATGAHGWKAGQQCTSQEPDPFADLDWRK
Sbjct: 1 MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAEGTQSASASTASLPRQSIGGIGSRLEGPMSEIPDASTVKNLLDLESDCIPTGPARSFPTLLEPATVTSCTQFSERVARNGLSDRCPLTGSVGQTGAPKSSSSLMCTSTIAAPQPQDMQFGDFLGAFSPSNPTPGRTPAALAQPGSHSNQALNLNDDFGEFMSSPPSQGLSMSTQSMRPVPLTAPQPRPSMVAPRVQPEDPFAMLAPDRPTLASIPLSHLHAQKMHPVGLAPACVIGSGVLAPQVFSINAPHSSFQPGQVPLHMVMNATGAHGWKAGQQCTSQEPDPFADLDWRK 435
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1173960083|gb|OQS06247.1| (hypothetical protein THRCLA_20414 [Thraustotheca clavata]) HSP 1 Score: 135.191 bits (339), Expect = 4.941e-32 Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 0
Query: 14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL-DGTLLLRPG--DSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAE 142
L +R+L NK+C NC +S GH ++C KF TF+C+ CKSAHQS+SHR K+VT+SNWT EV L ++ GGGN AR+TW GK DG + +P D L K F+N AYN K ++ + AK+T++ E
Sbjct: 6 LNILRKLEANKACANCDTISKFGHSNVCDKFKTFVCNNCKSAHQSYSHRVKSVTMSNWTKEEVDALKEENGGGNAVARRTWFGKWEDGRSMRKPAENDHLDVFKRFINAAYNEKAFYT--EYNAKTTTINHE 135
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1173943216|gb|OQR92097.1| (hypothetical protein ACHHYP_04058 [Achlya hypogyna]) HSP 1 Score: 132.109 bits (331), Expect = 7.882e-31 Identity = 56/122 (45.90%), Postives = 82/122 (67.21%), Query Frame = 0
Query: 11 KLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL-DGTLLLRP--GDSLQDVKNFVNDAYNHKRYWKD 129
+ +L IR+L NK+C NC ++ GH ++C KF TF+C+ CKSAHQS+SHR K+VT+SNWT+ EV L ++ GGGN AR+TWLG +G + +P D + K F+N AYN + ++ +
Sbjct: 3 EAVLNTIRKLEANKACANCDTIAKFGHSNVCDKFKTFVCNNCKSAHQSYSHRVKSVTMSNWTMEEVDALKEENGGGNAVARRTWLGAWEEGRSMRKPTESDHVDVFKRFINAAYNDRAFYSE 124
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1032152604|gb|OAO16025.1| (NSP (nuclear shuttle protein)-interacting GTPase [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 130.568 bits (327), Expect = 1.307e-30 Identity = 58/115 (50.43%), Postives = 78/115 (67.83%), Query Frame = 0
Query: 13 LLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLL-RPGDSLQDVKNFVNDAYNHKRY 126
LL +IR++ NK CVNCG+ + GH ++C+ + +F+CH CKSAHQSFSHR K+VT+S WTL EV+ LS++ GGGN+ + WL D +PGDSL KNFV AY K +
Sbjct: 12 LLAKIRKIEENKYCVNCGEYAKLGHTNVCVPYSSFVCHMCKSAHQSFSHRVKSVTMSTWTLKEVRALSEKHGGGNKCCKAKWLATGDVEKYRPKPGDSLDKYKNFVRMAYEEKMF 126
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|635365180|emb|CCI46451.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 130.568 bits (327), Expect = 1.787e-30 Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0
Query: 14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRP--GDSLQDVKNFVNDAYNHKRYW 127
L +R+L NKSC+NCG S GH ++C F TF C CKSAHQSFS R K+ ++SNW+ EV+ L ++ GGGN NAR+ W GK D L+ RP GD+L+ K+F++ YN + ++
Sbjct: 9 LNVLRKLEANKSCINCGSYSKFGHPNVCEPFKTFTCSQCKSAHQSFSMRVKHYSMSNWSAEEVEALKEENGGGNVNARRVWFGKWDENLMRRPTEGDNLEYFKSFIDKVYNQRAFY 124
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|813184396|ref|XP_012206370.1| (hypothetical protein SPRG_11778 [Saprolegnia parasitica CBS 223.65] >gi|641528725|gb|KDO22934.1| hypothetical protein SPRG_11778 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 130.954 bits (328), Expect = 1.839e-30 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = 0
Query: 14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL-DGTLLLRP--GDSLQDVKNFVNDAYNHKRYWKD 129
L IR+L NK+C NC V+ GH +IC KF TF+C+ CKSAHQS+SHR K+VT+SNWT EV L ++ GGGN AR+TWLG DG + +P D + K F+N YN + ++ +
Sbjct: 6 LNTIRKLEANKACANCDAVAKFGHSNICEKFKTFVCNNCKSAHQSYSHRVKSVTMSNWTKDEVDALKEENGGGNAVARRTWLGAYEDGRSMRKPTESDHVDVFKRFINTVYNDRAFYAE 124
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|698813796|ref|XP_009839927.1| (hypothetical protein H257_13931 [Aphanomyces astaci] >gi|574105018|gb|ETV70544.1| hypothetical protein H257_13931 [Aphanomyces astaci]) HSP 1 Score: 130.954 bits (328), Expect = 2.168e-30 Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 0
Query: 11 KLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL---DGTLLLRP--GDSLQDVKNFVNDAYNHKRYWKDP 130
+ LL +R+L NK+C NC V+ GHG+IC KF TF+C+ CKSAHQS+SHR K+VT+SNWT +V L ++ GGGN AR+TWL DG L +P D L K F+N YN K Y+ +P
Sbjct: 5 EALLNTLRKLDANKACANCDAVAKFGHGNICEKFKTFVCNHCKSAHQSYSHRVKSVTMSNWTREDVDALKEEHGGGNALARRTWLASWKDGDGRSLRKPLETDHLDVFKKFINAVYNDKAYFSEP 129
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|676378837|ref|XP_009032697.1| (hypothetical protein AURANDRAFT_60616 [Aureococcus anophagefferens] >gi|323457232|gb|EGB13098.1| hypothetical protein AURANDRAFT_60616 [Aureococcus anophagefferens]) HSP 1 Score: 130.183 bits (326), Expect = 6.366e-30 Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 0
Query: 14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWK 128
L+ +R+LP NK C NCG V+ GHG + + + TF+CHTCKS+HQSFSH CK+V++S W+ EV++L D GGN R ++GK+D + L+PG SLQ K FV+ YN + +++
Sbjct: 10 LDTLRKLPENKQCANCGVVAQHGHGAVVMTYATFVCHTCKSSHQSFSHLCKSVSMSYWSAKEVKKLRD---GGNARCRAVFMGKMDPSRGLKPGASLQATKGFVDLVYNKRAFFE 121
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|325185522|emb|CCA20004.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325188752|emb|CCA23283.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 128.642 bits (322), Expect = 7.389e-30 Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = 0
Query: 14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRP--GDSLQDVKNFVNDAYNHKRYW 127
L IR+L NKSCVNCG + GH ++C F TF C CKSAHQSFS R K+ ++SNWT EV+ L ++ GGGN NAR+ W G+ D L+ RP D+L+ K+F++ YN + ++
Sbjct: 9 LNAIRKLEGNKSCVNCGSYNKFGHPNVCEPFKTFTCSQCKSAHQSFSMRVKHYSMSNWTADEVEALKEENGGGNINARRVWFGRWDENLMRRPTEKDNLEYFKSFIDKVYNQRAFY 124
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1129178411|gb|OLP86398.1| (putative ADP-ribosylation factor GTPase-activating protein AGD14 [Symbiodinium microadriaticum]) HSP 1 Score: 124.02 bits (310), Expect = 1.171e-29 Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 0
Query: 1 MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQ 131
MA DK + L++IRRLP N+ C NC K G +C F TF+CH CKSAHQSFSHRCK++ +S WTL EV+ L D GGGN A + +LGK+ ++ G +L+ K F+ AY +R W D Q
Sbjct: 16 MAPPETDKATEKELQRIRRLPENRVCPNCLKEESLGFSAVCTTFKTFICHDCKSAHQSFSHRCKSIQMSVWTLEEVKALDDCNGGGNAAAVRKYLGKVTPKDRVKQGSTLELYKRFIQRAYVDQR-WADDQ 145 The following BLAST results are available for this feature:
BLAST of EWM29114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|