EWM29114.1, cds1518 (CDS) Nannochloropsis gaditana

Overview
NameEWM29114.1
Unique Namecds1518
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:838837..838884 +
Alignment locationCM002457.1:839109..840368 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29114.1
Productadp-ribosylation factor gtpase-activating protein agd14
Orig transcript idgnl|cribi|Naga_100007g54.6441.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:838837..838884 +
CM002457.1supercontigCM002457.1:839109..840368 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0005096GTPase activator activity
Vocabulary: INTERPRO
TermDefinition
IPR001164ArfGAP
Homology
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|585111634|gb|EWM29114.1| (adp-ribosylation factor gtpase-activating protein agd14 [Nannochloropsis gaditana])

HSP 1 Score: 894.419 bits (2310), Expect = 0.000e+0
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0
Query:    1 MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAEGTQSASASTASLPRQSIGGIGSRLEGPMSEIPDASTVKNLLDLESDCIPTGPARSFPTLLEPATVTSCTQFSERVARNGLSDRCPLTGSVGQTGAPKSSSSLMCTSTIAAPQPQDMQFGDFLGAFSPSNPTPGRTPAALAQPGSHSNQALNLNDDFGEFMSSPPSQGLSMSTQSMRPVPLTAPQPRPSMVAPRVQPEDPFAMLAPDRPTLASIPLSHLHAQKMHPVGLAPACVIGSGVLAPQVFSINAPHSSFQPGQVPLHMVMNATGAHGWKAGQQCTSQEPDPFADLDWRK 435
            MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAEGTQSASASTASLPRQSIGGIGSRLEGPMSEIPDASTVKNLLDLESDCIPTGPARSFPTLLEPATVTSCTQFSERVARNGLSDRCPLTGSVGQTGAPKSSSSLMCTSTIAAPQPQDMQFGDFLGAFSPSNPTPGRTPAALAQPGSHSNQALNLNDDFGEFMSSPPSQGLSMSTQSMRPVPLTAPQPRPSMVAPRVQPEDPFAMLAPDRPTLASIPLSHLHAQKMHPVGLAPACVIGSGVLAPQVFSINAPHSSFQPGQVPLHMVMNATGAHGWKAGQQCTSQEPDPFADLDWRK
Sbjct:    1 MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAEGTQSASASTASLPRQSIGGIGSRLEGPMSEIPDASTVKNLLDLESDCIPTGPARSFPTLLEPATVTSCTQFSERVARNGLSDRCPLTGSVGQTGAPKSSSSLMCTSTIAAPQPQDMQFGDFLGAFSPSNPTPGRTPAALAQPGSHSNQALNLNDDFGEFMSSPPSQGLSMSTQSMRPVPLTAPQPRPSMVAPRVQPEDPFAMLAPDRPTLASIPLSHLHAQKMHPVGLAPACVIGSGVLAPQVFSINAPHSSFQPGQVPLHMVMNATGAHGWKAGQQCTSQEPDPFADLDWRK 435          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1173960083|gb|OQS06247.1| (hypothetical protein THRCLA_20414 [Thraustotheca clavata])

HSP 1 Score: 135.191 bits (339), Expect = 4.941e-32
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 0
Query:   14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL-DGTLLLRPG--DSLQDVKNFVNDAYNHKRYWKDPQMIAKSTSVAAE 142
            L  +R+L  NK+C NC  +S  GH ++C KF TF+C+ CKSAHQS+SHR K+VT+SNWT  EV  L ++ GGGN  AR+TW GK  DG  + +P   D L   K F+N AYN K ++   +  AK+T++  E
Sbjct:    6 LNILRKLEANKACANCDTISKFGHSNVCDKFKTFVCNNCKSAHQSYSHRVKSVTMSNWTKEEVDALKEENGGGNAVARRTWFGKWEDGRSMRKPAENDHLDVFKRFINAAYNEKAFYT--EYNAKTTTINHE 135          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1173943216|gb|OQR92097.1| (hypothetical protein ACHHYP_04058 [Achlya hypogyna])

HSP 1 Score: 132.109 bits (331), Expect = 7.882e-31
Identity = 56/122 (45.90%), Postives = 82/122 (67.21%), Query Frame = 0
Query:   11 KLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL-DGTLLLRP--GDSLQDVKNFVNDAYNHKRYWKD 129
            + +L  IR+L  NK+C NC  ++  GH ++C KF TF+C+ CKSAHQS+SHR K+VT+SNWT+ EV  L ++ GGGN  AR+TWLG   +G  + +P   D +   K F+N AYN + ++ +
Sbjct:    3 EAVLNTIRKLEANKACANCDTIAKFGHSNVCDKFKTFVCNNCKSAHQSYSHRVKSVTMSNWTMEEVDALKEENGGGNAVARRTWLGAWEEGRSMRKPTESDHVDVFKRFINAAYNDRAFYSE 124          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1032152604|gb|OAO16025.1| (NSP (nuclear shuttle protein)-interacting GTPase [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 130.568 bits (327), Expect = 1.307e-30
Identity = 58/115 (50.43%), Postives = 78/115 (67.83%), Query Frame = 0
Query:   13 LLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLL-RPGDSLQDVKNFVNDAYNHKRY 126
            LL +IR++  NK CVNCG+ +  GH ++C+ + +F+CH CKSAHQSFSHR K+VT+S WTL EV+ LS++ GGGN+  +  WL   D      +PGDSL   KNFV  AY  K +
Sbjct:   12 LLAKIRKIEENKYCVNCGEYAKLGHTNVCVPYSSFVCHMCKSAHQSFSHRVKSVTMSTWTLKEVRALSEKHGGGNKCCKAKWLATGDVEKYRPKPGDSLDKYKNFVRMAYEEKMF 126          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|635365180|emb|CCI46451.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 130.568 bits (327), Expect = 1.787e-30
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 0
Query:   14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRP--GDSLQDVKNFVNDAYNHKRYW 127
            L  +R+L  NKSC+NCG  S  GH ++C  F TF C  CKSAHQSFS R K+ ++SNW+  EV+ L ++ GGGN NAR+ W GK D  L+ RP  GD+L+  K+F++  YN + ++
Sbjct:    9 LNVLRKLEANKSCINCGSYSKFGHPNVCEPFKTFTCSQCKSAHQSFSMRVKHYSMSNWSAEEVEALKEENGGGNVNARRVWFGKWDENLMRRPTEGDNLEYFKSFIDKVYNQRAFY 124          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|813184396|ref|XP_012206370.1| (hypothetical protein SPRG_11778 [Saprolegnia parasitica CBS 223.65] >gi|641528725|gb|KDO22934.1| hypothetical protein SPRG_11778 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 130.954 bits (328), Expect = 1.839e-30
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL-DGTLLLRP--GDSLQDVKNFVNDAYNHKRYWKD 129
            L  IR+L  NK+C NC  V+  GH +IC KF TF+C+ CKSAHQS+SHR K+VT+SNWT  EV  L ++ GGGN  AR+TWLG   DG  + +P   D +   K F+N  YN + ++ +
Sbjct:    6 LNTIRKLEANKACANCDAVAKFGHSNICEKFKTFVCNNCKSAHQSYSHRVKSVTMSNWTKDEVDALKEENGGGNAVARRTWLGAYEDGRSMRKPTESDHVDVFKRFINTVYNDRAFYAE 124          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|698813796|ref|XP_009839927.1| (hypothetical protein H257_13931 [Aphanomyces astaci] >gi|574105018|gb|ETV70544.1| hypothetical protein H257_13931 [Aphanomyces astaci])

HSP 1 Score: 130.954 bits (328), Expect = 2.168e-30
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 0
Query:   11 KLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKL---DGTLLLRP--GDSLQDVKNFVNDAYNHKRYWKDP 130
            + LL  +R+L  NK+C NC  V+  GHG+IC KF TF+C+ CKSAHQS+SHR K+VT+SNWT  +V  L ++ GGGN  AR+TWL      DG  L +P   D L   K F+N  YN K Y+ +P
Sbjct:    5 EALLNTLRKLDANKACANCDAVAKFGHGNICEKFKTFVCNHCKSAHQSYSHRVKSVTMSNWTREDVDALKEEHGGGNALARRTWLASWKDGDGRSLRKPLETDHLDVFKKFINAVYNDKAYFSEP 129          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|676378837|ref|XP_009032697.1| (hypothetical protein AURANDRAFT_60616 [Aureococcus anophagefferens] >gi|323457232|gb|EGB13098.1| hypothetical protein AURANDRAFT_60616 [Aureococcus anophagefferens])

HSP 1 Score: 130.183 bits (326), Expect = 6.366e-30
Identity = 55/115 (47.83%), Postives = 80/115 (69.57%), Query Frame = 0
Query:   14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWK 128
            L+ +R+LP NK C NCG V+  GHG + + + TF+CHTCKS+HQSFSH CK+V++S W+  EV++L D   GGN   R  ++GK+D +  L+PG SLQ  K FV+  YN + +++
Sbjct:   10 LDTLRKLPENKQCANCGVVAQHGHGAVVMTYATFVCHTCKSSHQSFSHLCKSVSMSYWSAKEVKKLRD---GGNARCRAVFMGKMDPSRGLKPGASLQATKGFVDLVYNKRAFFE 121          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|325185522|emb|CCA20004.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325188752|emb|CCA23283.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 128.642 bits (322), Expect = 7.389e-30
Identity = 56/116 (48.28%), Postives = 77/116 (66.38%), Query Frame = 0
Query:   14 LEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRP--GDSLQDVKNFVNDAYNHKRYW 127
            L  IR+L  NKSCVNCG  +  GH ++C  F TF C  CKSAHQSFS R K+ ++SNWT  EV+ L ++ GGGN NAR+ W G+ D  L+ RP   D+L+  K+F++  YN + ++
Sbjct:    9 LNAIRKLEGNKSCVNCGSYNKFGHPNVCEPFKTFTCSQCKSAHQSFSMRVKHYSMSNWTADEVEALKEENGGGNINARRVWFGRWDENLMRRPTEKDNLEYFKSFIDKVYNQRAFY 124          
BLAST of EWM29114.1 vs. NCBI_GenBank
Match: gi|1129178411|gb|OLP86398.1| (putative ADP-ribosylation factor GTPase-activating protein AGD14 [Symbiodinium microadriaticum])

HSP 1 Score: 124.02 bits (310), Expect = 1.171e-29
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 0
Query:    1 MAATADDKRIKLLLEQIRRLPHNKSCVNCGKVSIAGHGDICIKFLTFLCHTCKSAHQSFSHRCKNVTLSNWTLAEVQQLSDQAGGGNQNARQTWLGKLDGTLLLRPGDSLQDVKNFVNDAYNHKRYWKDPQ 131
            MA    DK  +  L++IRRLP N+ C NC K    G   +C  F TF+CH CKSAHQSFSHRCK++ +S WTL EV+ L D  GGGN  A + +LGK+     ++ G +L+  K F+  AY  +R W D Q
Sbjct:   16 MAPPETDKATEKELQRIRRLPENRVCPNCLKEESLGFSAVCTTFKTFICHDCKSAHQSFSHRCKSIQMSVWTLEEVKALDDCNGGGNAAAVRKYLGKVTPKDRVKQGSTLELYKRFIQRAYVDQR-WADDQ 145          
The following BLAST results are available for this feature:
BLAST of EWM29114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111634|gb|EWM29114.1|0.000e+0100.00adp-ribosylation factor gtpase-activating protein ... [more]
gi|1173960083|gb|OQS06247.1|4.941e-3247.73hypothetical protein THRCLA_20414 [Thraustotheca c... [more]
gi|1173943216|gb|OQR92097.1|7.882e-3145.90hypothetical protein ACHHYP_04058 [Achlya hypogyna... [more]
gi|1032152604|gb|OAO16025.1|1.307e-3050.43NSP (nuclear shuttle protein)-interacting GTPase [... [more]
gi|635365180|emb|CCI46451.1|1.787e-3048.28unnamed protein product [Albugo candida][more]
gi|813184396|ref|XP_012206370.1|1.839e-3048.74hypothetical protein SPRG_11778 [Saprolegnia paras... [more]
gi|698813796|ref|XP_009839927.1|2.168e-3049.60hypothetical protein H257_13931 [Aphanomyces astac... [more]
gi|676378837|ref|XP_009032697.1|6.366e-3047.83hypothetical protein AURANDRAFT_60616 [Aureococcus... [more]
gi|325185522|emb|CCA20004.1|7.389e-3048.28conserved hypothetical protein [Albugo laibachii N... [more]
gi|1129178411|gb|OLP86398.1|1.171e-2946.56putative ADP-ribosylation factor GTPase-activating... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1521rna1521Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications