EWM29125.1, cds1489 (CDS) Nannochloropsis gaditana

Overview
NameEWM29125.1
Unique Namecds1489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:763493..765013 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29125.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g89.6452.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:763493..765013 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29125.1 vs. NCBI_GenBank
Match: gi|585111645|gb|EWM29125.1| (hypothetical protein Naga_100007g89 [Nannochloropsis gaditana])

HSP 1 Score: 1026.16 bits (2652), Expect = 0.000e+0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0
Query:    1 MQVQTVSPSPTSIVMDYRKQLNSIEARLMNAPLHSGRSEDKSELLASQVGHHHESSLPITLPVSQTKSSRMEAAVGASEDMECGITHEEQVVDELLQARETFMCQRWGDLLGQLKAGKSLGVTVRQEEERSYHFENKFQQEEHRLRGLFETAEGDIHGLVRATVEKHHEQARIRKEILERKKSVECLLNTLENIQGSLSLGEEALSKLDEDEKAEEQDGQNQIRVMEAAIEDIRAKNCDARKRVSELQSTLEVLQTAALADGEEASSRADPALVEQEAEVLAEAGRLRGHAEDLQKVLETLQGLYNVAVTVVDGSDAKPGEMVLRVGYPSQHALEVTLSTSDETVQLLHARLELPIVQQRRRSLATSEMQRLMMNQVDNLVTVAQGLTPPHDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEAMDELTVTYAEGVVASFLLLEGYPQMPGSVRIVGLVGVGGWKDTDLAITSRSLNGLGLESLTALVDALHERIAESDSKA 506
            MQVQTVSPSPTSIVMDYRKQLNSIEARLMNAPLHSGRSEDKSELLASQVGHHHESSLPITLPVSQTKSSRMEAAVGASEDMECGITHEEQVVDELLQARETFMCQRWGDLLGQLKAGKSLGVTVRQEEERSYHFENKFQQEEHRLRGLFETAEGDIHGLVRATVEKHHEQARIRKEILERKKSVECLLNTLENIQGSLSLGEEALSKLDEDEKAEEQDGQNQIRVMEAAIEDIRAKNCDARKRVSELQSTLEVLQTAALADGEEASSRADPALVEQEAEVLAEAGRLRGHAEDLQKVLETLQGLYNVAVTVVDGSDAKPGEMVLRVGYPSQHALEVTLSTSDETVQLLHARLELPIVQQRRRSLATSEMQRLMMNQVDNLVTVAQGLTPPHDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEAMDELTVTYAEGVVASFLLLEGYPQMPGSVRIVGLVGVGGWKDTDLAITSRSLNGLGLESLTALVDALHERIAESDSKA
Sbjct:    1 MQVQTVSPSPTSIVMDYRKQLNSIEARLMNAPLHSGRSEDKSELLASQVGHHHESSLPITLPVSQTKSSRMEAAVGASEDMECGITHEEQVVDELLQARETFMCQRWGDLLGQLKAGKSLGVTVRQEEERSYHFENKFQQEEHRLRGLFETAEGDIHGLVRATVEKHHEQARIRKEILERKKSVECLLNTLENIQGSLSLGEEALSKLDEDEKAEEQDGQNQIRVMEAAIEDIRAKNCDARKRVSELQSTLEVLQTAALADGEEASSRADPALVEQEAEVLAEAGRLRGHAEDLQKVLETLQGLYNVAVTVVDGSDAKPGEMVLRVGYPSQHALEVTLSTSDETVQLLHARLELPIVQQRRRSLATSEMQRLMMNQVDNLVTVAQGLTPPHDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEAMDELTVTYAEGVVASFLLLEGYPQMPGSVRIVGLVGVGGWKDTDLAITSRSLNGLGLESLTALVDALHERIAESDSKA 506          
BLAST of EWM29125.1 vs. NCBI_GenBank
Match: gi|299471296|emb|CBN79122.1| (hypothetical protein Esi_0192_0025 [Ectocarpus siliculosus])

HSP 1 Score: 68.1662 bits (165), Expect = 1.454e-8
Identity = 48/181 (26.52%), Postives = 80/181 (44.20%), Query Frame = 0
Query:  322 MVLRVGYPSQHALEVTLSTSD---ETVQLLHARLELPIVQQRRRSLATSEMQRLMMNQVDNLVTVAQGLTPPHDLLFLAREVGWMVASRGVAKQEIRELMKRYIVKHNEAMDELTVTYAEGVVASFLLLEGYPQMPGSVRIVGLVGVGGWKDTDLAITSRSLNGLGLESLTALVDALHERI 499
            M L V   S   +EVT+S +D    + QL H +               +    +  ++++ +   A  L  P +L  L  E         V ++ +R++ +RY+  +     E+TVT   G+VA F L   YP++ G   +V L GVGGW   +     R +N + L +L A +D L   +
Sbjct:  331 MELMVSLGSGLTMEVTVSAADGKLSSAQLCHGQG----------GGGAASFAGISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRPPSREVTVTMGAGIVACFRLAVDYPKVVGGAEVVALTGVGGWSAHETEQLCRRVNDMALPTLMATMDVLEAEV 501          
The following BLAST results are available for this feature:
BLAST of EWM29125.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111645|gb|EWM29125.1|0.000e+0100.00hypothetical protein Naga_100007g89 [Nannochlorops... [more]
gi|299471296|emb|CBN79122.1|1.454e-826.52hypothetical protein Esi_0192_0025 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1492rna1492Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications