EWM29273.1, cds1413 (CDS) Nannochloropsis gaditana

Overview
NameEWM29273.1
Unique Namecds1413
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:582678..582699 -
Alignment locationCM002457.1:582267..582559 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29273.1
ProductSelenoprotein SelK/SelG
Orig transcript idgnl|cribi|Naga_100029g10.9530.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:582678..582699 -
CM002457.1supercontigCM002457.1:582267..582559 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG
Homology
[Close]
BLAST of EWM29273.1 vs. NCBI_GenBank
Match: gi|585111796|gb|EWM29273.1| (Selenoprotein SelK/SelG [Nannochloropsis gaditana])

HSP 1 Score: 208.379 bits (529), Expect = 3.322e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MVYVERDGTMTAKKTMIQSIMDAAWGLVNVVGLFFSTFVPSTREERRVQALERRGARGGRTSSSGGNAGGAGGGLRHRGSNIHSLRQSTQATVPGGGCSGGTCG 104
            MVYVERDGTMTAKKTMIQSIMDAAWGLVNVVGLFFSTFVPSTREERRVQALERRGARGGRTSSSGGNAGGAGGGLRHRGSNIHSLRQSTQATVPGGGCSGGTCG
Sbjct:    1 MVYVERDGTMTAKKTMIQSIMDAAWGLVNVVGLFFSTFVPSTREERRVQALERRGARGGRTSSSGGNAGGAGGGLRHRGSNIHSLRQSTQATVPGGGCSGGTCG 104
The following BLAST results are available for this feature:
BLAST of EWM29273.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111796|gb|EWM29273.1|3.322e-68100.00Selenoprotein SelK/SelG [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1415rna1415Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications