EWM29303.1, cds1364 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|585111827|gb|EWM29303.1| (emp24 gp25l p24 family protein [Nannochloropsis gaditana]) HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0 Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query: 1 MPLLSTRPRRDSNSWPPGPLGFIMQKRMVNASSRLRHRAFVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
MPLLSTRPRRDSNSWPPGPLGFIMQKRMVNASSRLRHRAFVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV
Sbjct: 1 MPLLSTRPRRDSNSWPPGPLGFIMQKRMVNASSRLRHRAFVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|553188377|ref|XP_005854785.1| (emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >gi|553188587|ref|XP_005854822.1| emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >gi|422294234|gb|EKU21534.1| emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >gi|422294274|gb|EKU21574.1| emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 427.172 bits (1097), Expect = 9.542e-151 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query: 48 MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV
Sbjct: 1 MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 204
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|676396677|ref|XP_009041616.1| (hypothetical protein AURANDRAFT_15190, partial [Aureococcus anophagefferens] >gi|323447777|gb|EGB03687.1| hypothetical protein AURANDRAFT_15190, partial [Aureococcus anophagefferens]) HSP 1 Score: 127.102 bits (318), Expect = 3.399e-33 Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 0
Query: 127 KGQFKFATVKDGFHSLCIVPHT--VTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFF 245
KG+ ATV + H LC+ P T + + LEV G D YY+++A E H+D L+ ++ LN ++ +ILNEADYMK+KEV FH++ ER N AA WWPILQ+ IL++T QV+NLK FF
Sbjct: 29 KGEESMATVSEANHDLCVKPVTNKLEAEFRFELEVERGHGDKYYSEMASENHMDRLQVEVVKLNDELAEILNEADYMKEKEVKFHKKAERINLAAIWWPILQIAILVLTATFQVHNLKGFF 149
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|66815741|ref|XP_641887.1| (hypothetical protein DDB_G0278969 [Dictyostelium discoideum AX4] >gi|40056986|dbj|BAD05162.1| emp24/gp25L/p24 family protein [Dictyostelium discoideum] >gi|60469924|gb|EAL67906.1| hypothetical protein DDB_G0278969 [Dictyostelium discoideum AX4]) HSP 1 Score: 99.7525 bits (247), Expect = 5.209e-22 Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 0
Query: 69 GNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEK----------GQFKFATVKDGFHSLCIVPHTV-----TKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
G +CF+ E P+ T V Y L Q GG G + +V E++ G+F F+T G H +C +T + T++ LE+ G Y ++AK H+ +E S+ LN ++ QI E Y K +E++F E TN+ WW I+Q+ +L++TGV Q+ +LK FFKA++LV
Sbjct: 28 GQTKCFIEENPKDTTVLGKYILEDITPQQ-----------GGYGNQLSLTVKVTDPEKREVLSKTMPSNGRFAFSTQVGGEHKICFSTNTSKWFGPSVKTRLHLEIEGGAGANDYEEIAKVEHLTGIEISLRRLNDRVNQIRKEQSYQKGREIVFRNTSESTNARVMWWSIIQLVVLVLTGVWQMKHLKSFFKAKKLV 214
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|1160560259|ref|XP_020431828.1| (emp24/gp25L/p24 family protein [Polysphondylium pallidum PN500] >gi|281205517|gb|EFA79707.1| emp24/gp25L/p24 family protein [Polysphondylium pallidum PN500]) HSP 1 Score: 99.3673 bits (246), Expect = 7.016e-22 Identity = 67/205 (32.68%), Postives = 107/205 (52.20%), Query Frame = 0
Query: 56 ACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDY---DLPAYATQSLNLVIS-LVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTV-----TKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
+C A ++ + G +CF+ E P+ T + +Y DL A S L +S +V+ P V QM G+F F T+ G + +CI ++ T T++ L++ G + Y ++AK ++ LE S+ LN ++ Q+ E Y K +E+ F E TNS WW ILQV +L +TG+ Q+ +LK FFKA++LV
Sbjct: 20 SCSALYFEL--NGGTTKCFIEENPKDTLLVGNYVLEDLNPQAGISTPLALSVIVTDPENHE-----VLSKQMGAS-GRFAFQTLIGGEYKICISTNSSKWFGPTIKTRLHLDIQVGANANDYEEIAKVEQLNNLEISVKRLNDRVTQVRKEQSYQKAREITFRNTSESTNSRVMWWAILQVVVLCLTGMWQMRHLKSFFKAKKLV 216
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|1013949505|gb|KYR03165.1| (emp24/gp25L/p24 family protein [Dictyostelium lacteum]) HSP 1 Score: 97.8265 bits (242), Expect = 3.346e-21 Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 0
Query: 69 GNEQCFMIEQPQGTPVTVDY---DLPAYATQSLNLVISL-VSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTV-----TKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
G +CF+ E P+ T + Y DL Q L +S+ V+ P K K + + G+F F T G H +C +T + T++ L++ G Y D+AK ++ +E SI LN ++ QI E Y + +E F E TNS WW +LQV +L+ TGV Q+ +LK FFKA++LV
Sbjct: 29 GQTKCFLEENPKDTLLLGKYQLEDLNPPTGQPNQLALSVRVTDPEKKELLSKTMGTI------GRFSFTTQIGGEHKICFSTNTSRWFGPSVKTRLHLDLETGAGANDYEDIAKVEQLNSMEISIRRLNDRVNQIRKEQSYQRGREQTFRNTSESTNSRVMWWSLLQVVVLVATGVWQMRHLKSFFKAKKLV 214
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|953502849|emb|CEG36176.1| (transmembrane emp24 domain-containing protein 4 [Plasmopara halstedii]) HSP 1 Score: 94.3597 bits (233), Expect = 5.657e-20 Identity = 57/211 (27.01%), Postives = 103/211 (48.82%), Query Frame = 0
Query: 49 MLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCI--------VPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
+LL + Y IQ G+ +CF+++ P+ T +Y+ P T + ++++ + G K + + +KG F ++G H +CI +P T + L+++ G S Y +LAK+ +D L+ ++ L ++ I DY K+K + H + +NS A W ++Q+ ILLVTG Q +LK +F ++LV
Sbjct: 6 LLLFGVISAANALYFTIQKEGH-RCFLVDVPKDTTFRAEYESPD-TTDVMKTIVAIYAPKSADGKDEKTQVKSEQTNQKGSIMFTATENGPHWVCISLDSSNYALPDRAT--MRFTLKLSMGTSHEEYQNLAKKNQMDDLQLEVLKLRDRVTSIQRNQDYAKNKSMGLHLARKVSNSRATWMSVIQIVILLVTGFYQAKHLKAYFHVKKLV 212
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|470244126|ref|XP_004355795.1| (emp24/gp25L/p24 family protein [Dictyostelium fasciculatum] >gi|328868933|gb|EGG17311.1| emp24/gp25L/p24 family protein [Dictyostelium fasciculatum]) HSP 1 Score: 93.2041 bits (230), Expect = 1.442e-19 Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 0
Query: 128 GQFKFATVKDGFHSLCIV--PHTVTKP---TKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
G+F F T G + +C+ P P T++ L++ G + Y ++AK H++ LE S+ LN ++ QI E Y K +EV+F E TNS WW +LQ+ IL++TG+ Q+ +LK FFKA++LV
Sbjct: 79 GRFAFQTAMGGEYKICVSTNPSKWFGPQVKTRLHLDIQVGANANDYEEIAKVEHLNNLEISVKRLNDRVTQIRKEQSYQKGREVVFRNTSESTNSRVMWWSVLQLIILVLTGMWQMRHLKSFFKAKKLV 207
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|914614993|ref|NP_001299527.1| (transmembrane emp24 domain-containing protein eca precursor [Papilio xuthus] >gi|909571933|ref|XP_013141573.1| PREDICTED: transmembrane emp24 domain-containing protein eca [Papilio polytes] >gi|943970876|ref|XP_014367074.1| PREDICTED: transmembrane emp24 domain-containing protein eca [Papilio machaon] >gi|389608821|dbj|BAM18022.1| eclair [Papilio xuthus] >gi|930653528|gb|KPI95865.1| Transmembrane emp24 domain-containing protein eca [Papilio xuthus] >gi|930667556|gb|KPJ08642.1| Transmembrane emp24 domain-containing protein eca [Papilio machaon]) HSP 1 Score: 92.8189 bits (229), Expect = 2.187e-19 Identity = 63/222 (28.38%), Postives = 104/222 (46.85%), Query Frame = 0
Query: 40 FVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPG------GKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVT----KPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
F L F+ + LL F++ G +CF+ E P T V V+Y + Y +S + S PG + K+V ++ +G + F + G H +C+ ++ + +V L++ G+ YA +AK+ + L+ I L Q+ QI E Y + +E F Q E TN WW +LQ G+L+ G Q+ +LK FF+A++LV
Sbjct: 2 FYKLSSFIALFLLIDVTSALYFHI---AEGERKCFIEEIPDDTTVIVNYKVELYDPRSGGF---MPSTPGIGMHVEVRDPNDKIVLS-RVYSSEGMYSFTSTTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYASVAKKDKLSELQLRIRQLLDQVHQITKEQSYQRQREERFRQTSESTNQRVLWWSLLQTGVLIGIGYWQMRHLKSFFEAKKLV 216
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|698790688|ref|XP_009828376.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574116155|gb|ETV81639.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 92.8189 bits (229), Expect = 2.475e-19 Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 0
Query: 62 YVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQV--QMNEEKGQFKFATVKDGFHSLC--IVPHTVTKPT----KVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
+ V+ P+ + +CF ++ P+GT +Y+ P T L V+ + GP G + V Q +KG F + G H C I H P K L++ +G S A Y +LAK+ ++ LE +M L ++ I N+ DY ++K F E N+ A W ++Q+ +LLV GV QV +L+ +F+ ++LV
Sbjct: 20 HFVVTPN-DHKCFYLDVPEGTTFRAEYESPD-TTDELKTVLKIY-GPSTSGDVHENVPASISQTLNQKGTVAFTSTSSGEHWSCVSIDTHKYVVPDATKMKFKLKLRFGTSHAEYENLAKKEQMNELELEVMKLRDRVKAIQNQQDYAQEKGDKFRATSESNNARAMWVSVIQILVLLVAGVWQVRHLQSYFQKKKLV 214 The following BLAST results are available for this feature:
BLAST of EWM29303.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|