EWM29303.1, cds1364 (CDS) Nannochloropsis gaditana

Overview
NameEWM29303.1
Unique Namecds1364
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:452371..452571 +
Alignment locationCM002457.1:452694..453248 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29303.1
Productemp24 gp25l p24 family protein
Orig transcript idgnl|cribi|Naga_100152g5.721.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:452371..452571 +
CM002457.1supercontigCM002457.1:452694..453248 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD
Homology
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|585111827|gb|EWM29303.1| (emp24 gp25l p24 family protein [Nannochloropsis gaditana])

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MPLLSTRPRRDSNSWPPGPLGFIMQKRMVNASSRLRHRAFVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            MPLLSTRPRRDSNSWPPGPLGFIMQKRMVNASSRLRHRAFVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV
Sbjct:    1 MPLLSTRPRRDSNSWPPGPLGFIMQKRMVNASSRLRHRAFVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|553188377|ref|XP_005854785.1| (emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >gi|553188587|ref|XP_005854822.1| emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >gi|422294234|gb|EKU21534.1| emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526] >gi|422294274|gb|EKU21574.1| emp24 gp25l p24 family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 427.172 bits (1097), Expect = 9.542e-151
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:   48 MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV
Sbjct:    1 MMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 204          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|676396677|ref|XP_009041616.1| (hypothetical protein AURANDRAFT_15190, partial [Aureococcus anophagefferens] >gi|323447777|gb|EGB03687.1| hypothetical protein AURANDRAFT_15190, partial [Aureococcus anophagefferens])

HSP 1 Score: 127.102 bits (318), Expect = 3.399e-33
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 0
Query:  127 KGQFKFATVKDGFHSLCIVPHT--VTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFF 245
            KG+   ATV +  H LC+ P T  +    +  LEV  G  D YY+++A E H+D L+  ++ LN ++ +ILNEADYMK+KEV FH++ ER N AA WWPILQ+ IL++T   QV+NLK FF
Sbjct:   29 KGEESMATVSEANHDLCVKPVTNKLEAEFRFELEVERGHGDKYYSEMASENHMDRLQVEVVKLNDELAEILNEADYMKEKEVKFHKKAERINLAAIWWPILQIAILVLTATFQVHNLKGFF 149          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|66815741|ref|XP_641887.1| (hypothetical protein DDB_G0278969 [Dictyostelium discoideum AX4] >gi|40056986|dbj|BAD05162.1| emp24/gp25L/p24 family protein [Dictyostelium discoideum] >gi|60469924|gb|EAL67906.1| hypothetical protein DDB_G0278969 [Dictyostelium discoideum AX4])

HSP 1 Score: 99.7525 bits (247), Expect = 5.209e-22
Identity = 62/198 (31.31%), Postives = 97/198 (48.99%), Query Frame = 0
Query:   69 GNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEK----------GQFKFATVKDGFHSLCIVPHTV-----TKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            G  +CF+ E P+ T V   Y L     Q            GG G    +  +V   E++          G+F F+T   G H +C   +T      +  T++ LE+  G     Y ++AK  H+  +E S+  LN ++ QI  E  Y K +E++F    E TN+   WW I+Q+ +L++TGV Q+ +LK FFKA++LV
Sbjct:   28 GQTKCFIEENPKDTTVLGKYILEDITPQQ-----------GGYGNQLSLTVKVTDPEKREVLSKTMPSNGRFAFSTQVGGEHKICFSTNTSKWFGPSVKTRLHLEIEGGAGANDYEEIAKVEHLTGIEISLRRLNDRVNQIRKEQSYQKGREIVFRNTSESTNARVMWWSIIQLVVLVLTGVWQMKHLKSFFKAKKLV 214          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|1160560259|ref|XP_020431828.1| (emp24/gp25L/p24 family protein [Polysphondylium pallidum PN500] >gi|281205517|gb|EFA79707.1| emp24/gp25L/p24 family protein [Polysphondylium pallidum PN500])

HSP 1 Score: 99.3673 bits (246), Expect = 7.016e-22
Identity = 67/205 (32.68%), Postives = 107/205 (52.20%), Query Frame = 0
Query:   56 ACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDY---DLPAYATQSLNLVIS-LVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTV-----TKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            +C A ++ +    G  +CF+ E P+ T +  +Y   DL   A  S  L +S +V+ P         V   QM    G+F F T+  G + +CI  ++      T  T++ L++  G +   Y ++AK   ++ LE S+  LN ++ Q+  E  Y K +E+ F    E TNS   WW ILQV +L +TG+ Q+ +LK FFKA++LV
Sbjct:   20 SCSALYFEL--NGGTTKCFIEENPKDTLLVGNYVLEDLNPQAGISTPLALSVIVTDPENHE-----VLSKQMGAS-GRFAFQTLIGGEYKICISTNSSKWFGPTIKTRLHLDIQVGANANDYEEIAKVEQLNNLEISVKRLNDRVTQVRKEQSYQKAREITFRNTSESTNSRVMWWAILQVVVLCLTGMWQMRHLKSFFKAKKLV 216          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|1013949505|gb|KYR03165.1| (emp24/gp25L/p24 family protein [Dictyostelium lacteum])

HSP 1 Score: 97.8265 bits (242), Expect = 3.346e-21
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 0
Query:   69 GNEQCFMIEQPQGTPVTVDY---DLPAYATQSLNLVISL-VSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTV-----TKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            G  +CF+ E P+ T +   Y   DL     Q   L +S+ V+ P  K    K +  +      G+F F T   G H +C   +T      +  T++ L++  G     Y D+AK   ++ +E SI  LN ++ QI  E  Y + +E  F    E TNS   WW +LQV +L+ TGV Q+ +LK FFKA++LV
Sbjct:   29 GQTKCFLEENPKDTLLLGKYQLEDLNPPTGQPNQLALSVRVTDPEKKELLSKTMGTI------GRFSFTTQIGGEHKICFSTNTSRWFGPSVKTRLHLDLETGAGANDYEDIAKVEQLNSMEISIRRLNDRVNQIRKEQSYQRGREQTFRNTSESTNSRVMWWSLLQVVVLVATGVWQMRHLKSFFKAKKLV 214          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|953502849|emb|CEG36176.1| (transmembrane emp24 domain-containing protein 4 [Plasmopara halstedii])

HSP 1 Score: 94.3597 bits (233), Expect = 5.657e-20
Identity = 57/211 (27.01%), Postives = 103/211 (48.82%), Query Frame = 0
Query:   49 MLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCI--------VPHTVTKPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            +LL    +     Y  IQ  G+ +CF+++ P+ T    +Y+ P   T  +  ++++ +     G   K   + +   +KG   F   ++G H +CI        +P   T   +  L+++ G S   Y +LAK+  +D L+  ++ L  ++  I    DY K+K +  H   + +NS A W  ++Q+ ILLVTG  Q  +LK +F  ++LV
Sbjct:    6 LLLFGVISAANALYFTIQKEGH-RCFLVDVPKDTTFRAEYESPD-TTDVMKTIVAIYAPKSADGKDEKTQVKSEQTNQKGSIMFTATENGPHWVCISLDSSNYALPDRAT--MRFTLKLSMGTSHEEYQNLAKKNQMDDLQLEVLKLRDRVTSIQRNQDYAKNKSMGLHLARKVSNSRATWMSVIQIVILLVTGFYQAKHLKAYFHVKKLV 212          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|470244126|ref|XP_004355795.1| (emp24/gp25L/p24 family protein [Dictyostelium fasciculatum] >gi|328868933|gb|EGG17311.1| emp24/gp25L/p24 family protein [Dictyostelium fasciculatum])

HSP 1 Score: 93.2041 bits (230), Expect = 1.442e-19
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 0
Query:  128 GQFKFATVKDGFHSLCIV--PHTVTKP---TKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            G+F F T   G + +C+   P     P   T++ L++  G +   Y ++AK  H++ LE S+  LN ++ QI  E  Y K +EV+F    E TNS   WW +LQ+ IL++TG+ Q+ +LK FFKA++LV
Sbjct:   79 GRFAFQTAMGGEYKICVSTNPSKWFGPQVKTRLHLDIQVGANANDYEEIAKVEHLNNLEISVKRLNDRVTQIRKEQSYQKGREVVFRNTSESTNSRVMWWSVLQLIILVLTGMWQMRHLKSFFKAKKLV 207          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|914614993|ref|NP_001299527.1| (transmembrane emp24 domain-containing protein eca precursor [Papilio xuthus] >gi|909571933|ref|XP_013141573.1| PREDICTED: transmembrane emp24 domain-containing protein eca [Papilio polytes] >gi|943970876|ref|XP_014367074.1| PREDICTED: transmembrane emp24 domain-containing protein eca [Papilio machaon] >gi|389608821|dbj|BAM18022.1| eclair [Papilio xuthus] >gi|930653528|gb|KPI95865.1| Transmembrane emp24 domain-containing protein eca [Papilio xuthus] >gi|930667556|gb|KPJ08642.1| Transmembrane emp24 domain-containing protein eca [Papilio machaon])

HSP 1 Score: 92.8189 bits (229), Expect = 2.187e-19
Identity = 63/222 (28.38%), Postives = 104/222 (46.85%), Query Frame = 0
Query:   40 FVFLRIFLMMLLLSRNACKAEFYVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPG------GKGGGGKMVQQVQMNEEKGQFKFATVKDGFHSLCIVPHTVT----KPTKVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            F  L  F+ + LL        F++     G  +CF+ E P  T V V+Y +  Y  +S      + S PG       +    K+V   ++   +G + F +   G H +C+  ++ +       +V L++  G+    YA +AK+  +  L+  I  L  Q+ QI  E  Y + +E  F Q  E TN    WW +LQ G+L+  G  Q+ +LK FF+A++LV
Sbjct:    2 FYKLSSFIALFLLIDVTSALYFHI---AEGERKCFIEEIPDDTTVIVNYKVELYDPRSGGF---MPSTPGIGMHVEVRDPNDKIVLS-RVYSSEGMYSFTSTTPGEHVICMYSNSTSWFSGSQLRVHLDIQVGEHAVDYASVAKKDKLSELQLRIRQLLDQVHQITKEQSYQRQREERFRQTSESTNQRVLWWSLLQTGVLIGIGYWQMRHLKSFFEAKKLV 216          
BLAST of EWM29303.1 vs. NCBI_GenBank
Match: gi|698790688|ref|XP_009828376.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574116155|gb|ETV81639.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 92.8189 bits (229), Expect = 2.475e-19
Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 0
Query:   62 YVVIQPSGNEQCFMIEQPQGTPVTVDYDLPAYATQSLNLVISLVSGPGGKGGGGKMVQQV--QMNEEKGQFKFATVKDGFHSLC--IVPHTVTKPT----KVGLEVTYGKSDAYYADLAKEAHIDLLEASIMHLNAQMGQILNEADYMKDKEVLFHQQCERTNSAARWWPILQVGILLVTGVLQVNNLKQFFKARRLV 251
            + V+ P+ + +CF ++ P+GT    +Y+ P   T  L  V+ +  GP   G   + V     Q   +KG   F +   G H  C  I  H    P     K  L++ +G S A Y +LAK+  ++ LE  +M L  ++  I N+ DY ++K   F    E  N+ A W  ++Q+ +LLV GV QV +L+ +F+ ++LV
Sbjct:   20 HFVVTPN-DHKCFYLDVPEGTTFRAEYESPD-TTDELKTVLKIY-GPSTSGDVHENVPASISQTLNQKGTVAFTSTSSGEHWSCVSIDTHKYVVPDATKMKFKLKLRFGTSHAEYENLAKKEQMNELELEVMKLRDRVKAIQNQQDYAQEKGDKFRATSESNNARAMWVSVIQILVLLVAGVWQVRHLQSYFQKKKLV 214          
The following BLAST results are available for this feature:
BLAST of EWM29303.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111827|gb|EWM29303.1|0.000e+0100.00emp24 gp25l p24 family protein [Nannochloropsis ga... [more]
gi|553188377|ref|XP_005854785.1|9.542e-151100.00emp24 gp25l p24 family protein [Nannochloropsis ga... [more]
gi|676396677|ref|XP_009041616.1|3.399e-3348.76hypothetical protein AURANDRAFT_15190, partial [Au... [more]
gi|66815741|ref|XP_641887.1|5.209e-2231.31hypothetical protein DDB_G0278969 [Dictyostelium d... [more]
gi|1160560259|ref|XP_020431828.1|7.016e-2232.68emp24/gp25L/p24 family protein [Polysphondylium pa... [more]
gi|1013949505|gb|KYR03165.1|3.346e-2133.33emp24/gp25L/p24 family protein [Dictyostelium lact... [more]
gi|953502849|emb|CEG36176.1|5.657e-2027.01transmembrane emp24 domain-containing protein 4 [P... [more]
gi|470244126|ref|XP_004355795.1|1.442e-1937.98emp24/gp25L/p24 family protein [Dictyostelium fasc... [more]
gi|914614993|ref|NP_001299527.1|2.187e-1928.38transmembrane emp24 domain-containing protein eca ... [more]
gi|698790688|ref|XP_009828376.1|2.475e-1930.81hypothetical protein, variant [Aphanomyces astaci]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1366rna1366Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications