EWM29316.1, cds1359 (CDS) Nannochloropsis gaditana

Overview
NameEWM29316.1
Unique Namecds1359
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:438467..438585 +
Alignment locationCM002457.1:438718..438798 +
Alignment locationCM002457.1:438902..439181 +
Alignment locationCM002457.1:439378..439737 +

Link to JBrowse

Properties
Property NameValue
End range.
End range439737
Protein idEWM29316.1
Productprotein of unknown function DUF292, eukaryotic
Partialtrue
Orig transcript idgnl|cribi|Naga_100136g20.3167.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:438467..438585 +
CM002457.1supercontigCM002457.1:438718..438798 +
CM002457.1supercontigCM002457.1:438902..439181 +
CM002457.1supercontigCM002457.1:439378..439737 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR005061DUF292_euk
Homology
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|585111842|gb|EWM29316.1| (protein of unknown function DUF292, eukaryotic, partial [Nannochloropsis gaditana])

HSP 1 Score: 569.696 bits (1467), Expect = 0.000e+0
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
Query:    1 MLSSFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASGFGHLYTAPGGPGRAEGGAEGGGEGGTSMPIAHAVSSSTHLGPDPGAGKADVPPAFQPPPPFPPLP 280
            MLSSFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASGFGHLYTAPGGPGRAEGGAEGGGEGGTSMPIAHAVSSSTHLGPDPGAGKADVPPAFQPPPPFPPLP
Sbjct:    1 MLSSFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASGFGHLYTAPGGPGRAEGGAEGGGEGGTSMPIAHAVSSSTHLGPDPGAGKADVPPAFQPPPPFPPLP 280          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|669139062|ref|XP_008605099.1| (hypothetical protein SDRG_01356 [Saprolegnia diclina VS20] >gi|530743143|gb|EQC41385.1| hypothetical protein SDRG_01356 [Saprolegnia diclina VS20])

HSP 1 Score: 225.713 bits (574), Expect = 1.516e-69
Identity = 121/269 (44.98%), Postives = 164/269 (60.97%), Query Frame = 0
Query:   12 FDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG--FGHLYTAPGGPGRAEGGAEG-----------GGEGGTSMPIAHAVSSSTHLGPDPGAGKADVP 267
            F+V+KLKP LKMA+ RI I  NKK  A K+ ++++A LLA+ K+EKA I+VE +IRED  +EAY ILEL+CEL+ ERA LI +E+ CP D++ AV TLIW+ANR +IPEL EVK Q TKK+G++F   A ++ D  VNERV HKLS++PP++ +V  YL+EIA+ +NV W P+E P+   L     A   APTGV+V   P SG  +  +Y     PG+                      G ++P      +S    P  G    DVP
Sbjct:    4 FNVDKLKPNLKMAVGRIGIIKNKKANAAKVLRKEVAKLLAEGKEEKARIRVEGLIREDFVVEAYEILELLCELVAERAALIKAERACPYDMREAVNTLIWAANRTEIPELNEVKSQLTKKYGQDFAAAALRNVDGCVNERVIHKLSVQPPNSFLVINYLKEIAKQHNVNWVPIETPAMDPL-----APMMAPTGVTVGQAPVSGPNYAAVYATAPPPGKLPSAFPNVPSAAPITLPVAAPAGATVPPPSVTLNSVQQAPAAGGDTNDVP 267          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|813109352|ref|XP_012194545.1| (hypothetical protein SPRG_00943 [Saprolegnia parasitica CBS 223.65] >gi|641541122|gb|KDO34885.1| hypothetical protein SPRG_00943 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 221.476 bits (563), Expect = 7.444e-68
Identity = 113/215 (52.56%), Postives = 151/215 (70.23%), Query Frame = 0
Query:   12 FDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG--FGHLY-TAP 223
            F V+KLKP LKMA+ RI I  NKK  A K+ ++++A LLA+ K+EKA I+VE +IRED  +EAY ILEL+CEL+ ERA LI +E+ CP D++ AV TLIW+ANR +IPEL EVK Q TKK+G++F   A ++ D  VNERV HKLS++PP++ +V  YL+EIA+ +NV W P+E P+   L     A   APTG +V   P SG  +  +Y TAP
Sbjct:    4 FSVDKLKPNLKMAVGRIGIIKNKKANAAKVLRKEVAKLLAEGKEEKARIRVEGLIREDFVVEAYEILELLCELVAERAALIKAERACPYDMREAVYTLIWAANRTEIPELNEVKSQLTKKYGQDFAAAALRNVDGCVNERVIHKLSVQPPNSFLVINYLKEIAKQHNVNWVPIEMPAMDPL-----APMIAPTGATVGQAPVSGPNYAAVYATAP 213          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|698809878|ref|XP_009837968.1| (hypothetical protein H257_12455 [Aphanomyces astaci] >gi|574107226|gb|ETV72740.1| hypothetical protein H257_12455 [Aphanomyces astaci])

HSP 1 Score: 216.853 bits (551), Expect = 4.020e-66
Identity = 114/219 (52.05%), Postives = 146/219 (66.67%), Query Frame = 0
Query:   12 FDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG--FGHLYTAPGGPGR 228
            F+VNKLKP LKMA+ RI I  NKK    K  ++++A LLA  K+EKA I+VE +IRED  IEAY I+EL+CEL+ ER  LI SE+ECP D++ AV TLIW+A R +IPEL EVK Q TKK+G++F   A ++ D  VNERV HKLS++PP+A +V  YL+EIA+ +NV W P E  SQ+       A   APTG S+     SG  F  +Y     PGR
Sbjct:    4 FNVNKLKPSLKMAVHRIGIVKNKKAITSKAQRKEVAKLLADGKEEKARIRVEGLIREDFVIEAYEIIELLCELISERTPLIKSERECPYDMREAVCTLIWAATRTEIPELSEVKNQLTKKYGQDFTAAAMRNVDGCVNERVIHKLSVQPPNAYLVINYLKEIAKQHNVAWVPDE--SQIV---DPLAPMAAPTGTSIGQAGVSGPDFAAIYAEAPPPGR 217          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|673028262|ref|XP_008868092.1| (hypothetical protein H310_05213 [Aphanomyces invadans] >gi|574476865|gb|ETW03863.1| hypothetical protein H310_05213 [Aphanomyces invadans])

HSP 1 Score: 216.468 bits (550), Expect = 5.124e-66
Identity = 115/219 (52.51%), Postives = 146/219 (66.67%), Query Frame = 0
Query:   12 FDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG--FGHLYTAPGGPGR 228
            F+VNKLKP LKMA+ RI I  NKK    K  ++D+A LLA  K+EKA I+VE +IRED  IEAY I+EL+CEL+ ER  LI SE+ECP D++ AV TLIW+A R +IPEL EVK Q TKK+G++F   A ++ D  VNERV HKLS++PP+A +V  YL+EIA+ +NV W P E  SQ+       A   APTG S+     SG  F  +Y     PGR
Sbjct:    4 FNVNKLKPNLKMAVSRIGIVKNKKAITSKAQRKDVAKLLADGKEEKARIRVEGLIREDFVIEAYEIIELLCELISERTPLIKSERECPYDMREAVCTLIWAATRTEIPELAEVKNQLTKKYGQDFTAAAMRNVDGCVNERVIHKLSVQPPNAYLVINYLKEIAKQHNVAWVPDE--SQIV---DPLAPMAAPTGSSIGQAGVSGPDFAAIYAEAPPPGR 217          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|1210522306|dbj|GAX19068.1| (hypothetical protein FisN_8Hh294 [Fistulifera solaris])

HSP 1 Score: 196.052 bits (497), Expect = 1.122e-58
Identity = 99/208 (47.60%), Postives = 141/208 (67.79%), Query Frame = 0
Query:   12 FDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQ--KDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASGFG 217
            F+  KLKP LKMA+ RIQIA+NKK A  K   R++A +LA+   K+EKA I+ E++IR+D  IEAY IL+L CELL+ER +LI   K+CP+DL + V T+IW+++R DIPEL  ++KQF  K+G+EF ERA ++   ++N+RV HKLS+ PP+AA+V+ YL  I   + V+W+P  + +   L Q       AP G SV +   +G G
Sbjct:    6 FNAKKLKPELKMAVGRIQIASNKKAALQKQNLREVAKMLAEDPPKEEKARIRAEALIRDDYLIEAYEILQLNCELLYERMKLIEYSKDCPNDLVTVVSTIIWASHRVDIPELVLIRKQFKAKYGKEFEERALQNAGNVLNQRVVHKLSVEPPAAALVQIYLERICEQHEVDWSPKLKLTAAQLSQ----PMAAPFGYSVGIAQGTGLG 209          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|1173960678|gb|OQS06784.1| (hypothetical protein THRCLA_01211 [Thraustotheca clavata])

HSP 1 Score: 193.356 bits (490), Expect = 3.890e-57
Identity = 98/193 (50.78%), Postives = 135/193 (69.95%), Query Frame = 0
Query:   23 MAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG 215
            MA+ RI I  NKK  A K+ +++++ LLA+ K+EKA I+VE +IRED  +EAY ILEL+CEL+ ER  LI SE+ECP D++ AV TLIW+A R +IPEL EVK Q TKK+G++F   A ++ D  VNERV HKLS++PP+A +V  Y++EIA+ +N+ W P E  +Q+ +D    A   APTG S+     SG
Sbjct:    1 MAVGRIGIVKNKKANAAKVQRKEVSKLLAEGKEEKARIRVEGLIREDFIVEAYEILELLCELIAERVALIKSERECPYDMREAVCTLIWAATRTEIPELNEVKNQLTKKYGQDFTAAALRNVDGCVNERVIHKLSVQPPNAYLVINYMKEIAKQHNINWVPDE--TQI-ID--PLAPMVAPTGSSIGQAAVSG 188          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|299472014|emb|CBN80097.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 193.356 bits (490), Expect = 2.556e-55
Identity = 95/183 (51.91%), Postives = 130/183 (71.04%), Query Frame = 0
Query:    1 MLSSFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTP 183
            M S   +A   FD NK+KPFLKM+I R+ +  NKK   +KI++++IA LLA  K+EKA IKVE +IRED TIEAY +LEL CEL+ ER RL+AS+K+ P D++ AV T+IW+A+RA++ EL  VK QF KK+G E++  AE +E   VN +V  KL  +PPS+ +V +YL  IA   +VE+TP
Sbjct:    1 MTSLLKKAGLVFDENKVKPFLKMSITRLNLLVNKKANHIKISKKEIARLLADGKEEKARIKVEQVIREDFTIEAYDVLELHCELVAERMRLVASQKDVPPDMEQAVCTIIWAADRAEVSELSTVKSQFVKKYGSEYVRLAELNEGGCVNPKVVEKLDCQPPSSFVVTEYLLGIAEEYDVEYTP 183          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|568024937|gb|ETL98959.1| (hypothetical protein L917_04069 [Phytophthora parasitica])

HSP 1 Score: 191.43 bits (485), Expect = 2.616e-55
Identity = 114/223 (51.12%), Postives = 147/223 (65.92%), Query Frame = 0
Query:    2 LSSFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG--FGHLYTA 222
            +S F  +   F+VNKLKP LKMA+ RI I  NKK  A    +R++  LLA  K+EKA I+VE IIR+D T+E Y ILEL+CELL ERA LI +E +CP D++ AV TLIW+A+R +IPEL EVKKQ TKK+G++F   A ++ D  VNERV  KLS++PPSA +V  Y++EIA+   V+W P E      L     A  PAPTG +V  G  SG  F  LY +
Sbjct:   19 ISGFLGSMFGFNVNKLKPNLKMAVHRIGIVKNKKANAALAQRREVGRLLADGKEEKARIRVEGIIRDDFTMEGYEILELLCELLAERANLIKTEADCPYDMREAVCTLIWAASRTEIPELAEVKKQLTKKYGQDFEAAAIRNVDGCVNERVIQKLSVQPPSAFLVVNYMKEIAKEFKVDWEPDEAEVTDPL-----APIPAPTGATVTSGAVSGPEFAALYAS 236          
BLAST of EWM29316.1 vs. NCBI_GenBank
Match: gi|566029589|gb|ETI52500.1| (hypothetical protein F443_04363 [Phytophthora parasitica P1569] >gi|567967207|gb|ETK92389.1| hypothetical protein L915_04233 [Phytophthora parasitica] >gi|567995656|gb|ETL45786.1| hypothetical protein L916_04184 [Phytophthora parasitica] >gi|568055365|gb|ETM52112.1| hypothetical protein L914_04180 [Phytophthora parasitica] >gi|570333327|gb|ETO81275.1| hypothetical protein F444_04381 [Phytophthora parasitica P1976] >gi|570957353|gb|ETP22332.1| hypothetical protein F441_04325 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 191.43 bits (485), Expect = 3.106e-55
Identity = 114/223 (51.12%), Postives = 147/223 (65.92%), Query Frame = 0
Query:    2 LSSFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASG--FGHLYTA 222
            +S F  +   F+VNKLKP LKMA+ RI I  NKK  A    +R++  LLA  K+EKA I+VE IIR+D T+E Y ILEL+CELL ERA LI +E +CP D++ AV TLIW+A+R +IPEL EVKKQ TKK+G++F   A ++ D  VNERV  KLS++PPSA +V  Y++EIA+   V+W P E      L     A  PAPTG +V  G  SG  F  LY +
Sbjct:   19 ISGFLGSMFGFNVNKLKPNLKMAVHRIGIVKNKKANAALAQRREVGRLLADGKEEKARIRVEGIIRDDFTMEGYEILELLCELLAERANLIKTEADCPYDMREAVCTLIWAASRTEIPELAEVKKQLTKKYGQDFEAAAIRNVDGCVNERVIQKLSVQPPSAFLVVNYMKEIAKEFKVDWEPDEAEVTDPL-----APIPAPTGATVTSGAVSGPEFAALYAS 236          
The following BLAST results are available for this feature:
BLAST of EWM29316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111842|gb|EWM29316.1|0.000e+0100.00protein of unknown function DUF292, eukaryotic, pa... [more]
gi|669139062|ref|XP_008605099.1|1.516e-6944.98hypothetical protein SDRG_01356 [Saprolegnia dicli... [more]
gi|813109352|ref|XP_012194545.1|7.444e-6852.56hypothetical protein SPRG_00943 [Saprolegnia paras... [more]
gi|698809878|ref|XP_009837968.1|4.020e-6652.05hypothetical protein H257_12455 [Aphanomyces astac... [more]
gi|673028262|ref|XP_008868092.1|5.124e-6652.51hypothetical protein H310_05213 [Aphanomyces invad... [more]
gi|1210522306|dbj|GAX19068.1|1.122e-5847.60hypothetical protein FisN_8Hh294 [Fistulifera sola... [more]
gi|1173960678|gb|OQS06784.1|3.890e-5750.78hypothetical protein THRCLA_01211 [Thraustotheca c... [more]
gi|299472014|emb|CBN80097.1|2.556e-5551.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|568024937|gb|ETL98959.1|2.616e-5551.12hypothetical protein L917_04069 [Phytophthora para... [more]
gi|566029589|gb|ETI52500.1|3.106e-5551.12hypothetical protein F443_04363 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1361rna1361Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications