EWM29315.1, cds1358 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|585111841|gb|EWM29315.1| (ubiquitin family protein [Nannochloropsis gaditana]) HSP 1 Score: 394.045 bits (1011), Expect = 5.094e-139 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 Query: 1 MLVMTCSSNSHSATPSACSYNSTTRDSTLIFKRPGFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEGPTAKAKNQGTRAIGSGNIFSNRLGMVKGMRRGVGAHRREPFGNEWGNEGVAGCNGSRFLRADHVYITF 188 MLVMTCSSNSHSATPSACSYNSTTRDSTLIFKRPGFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEGPTAKAKNQGTRAIGSGNIFSNRLGMVKGMRRGVGAHRREPFGNEWGNEGVAGCNGSRFLRADHVYITF Sbjct: 1 MLVMTCSSNSHSATPSACSYNSTTRDSTLIFKRPGFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEGPTAKAKNQGTRAIGSGNIFSNRLGMVKGMRRGVGAHRREPFGNEWGNEGVAGCNGSRFLRADHVYITF 188
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|698805996|ref|XP_009836027.1| (hypothetical protein H257_10963 [Aphanomyces astaci] >gi|574108864|gb|ETV74369.1| hypothetical protein H257_10963 [Aphanomyces astaci]) HSP 1 Score: 64.3142 bits (155), Expect = 3.564e-10 Identity = 29/82 (35.37%), Postives = 56/82 (68.29%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVEN-IRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTK 118 MS+Y+RVKR +QT F+ EP++T VK + IL S N ++L+ +++ +++ D +++A+ Q+I+ND+++Y + E T+ Sbjct: 1 MSLYLRVKRRNQTFFILAEPHDTFLKVKETLASILTLSSPNQVQLWHTNKQKELLDAATVAD-QEIENDAVVYLCLKKENTE 81
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|673045627|ref|XP_008876774.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574467436|gb|ETV94459.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 63.5438 bits (153), Expect = 5.309e-10 Identity = 28/80 (35.00%), Postives = 54/80 (67.50%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVEN-IRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116 MS+Y+RVKR +QT F+ EP++T VK + IL + N ++L+ +++ +++ D +++A+ Q+I+ND+II+ + E Sbjct: 1 MSLYLRVKRRNQTFFVLAEPHDTFLKVKETLASILALTSPNQVQLWHTNKQKELLDAATVAD-QEIENDAIIFLCLKKES 79
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|635366472|emb|CCI45241.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 62.7734 bits (151), Expect = 1.265e-9 Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQD--IKNDSIIYAVFR 113 M Y+RVKR HQT+FL+V+P++T+ SVK +G I +NI+L+ + + S+ A +D I ND++IY ++ Sbjct: 1 MGPYIRVKRQHQTVFLNVQPSDTLLSVKETIGSIFQMPPQNIQLWQGLNQKTSKELSNTATIEDYGIANDTVIYMCWK 78
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|673045625|ref|XP_008876773.1| (hypothetical protein H310_11787 [Aphanomyces invadans] >gi|574467435|gb|ETV94458.1| hypothetical protein H310_11787 [Aphanomyces invadans]) HSP 1 Score: 61.6178 bits (148), Expect = 2.752e-9 Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVEN-IRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTK 118 MS+Y+RVKR +QT F+ EP++T VK + IL + N ++L+ +++ +++ D +++A+ Q+I+ND+II+ + E ++ Sbjct: 1 MSLYLRVKRRNQTFFVLAEPHDTFLKVKETLASILALTSPNQVQLWHTNKQKELLDAATVAD-QEIENDAIIFLCLKKENSE 81
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|298715594|emb|CBJ28147.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 60.8474 bits (146), Expect = 5.152e-9 Identity = 27/78 (34.62%), Postives = 53/78 (67.95%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGS-DRTRDMPDGSSLAEFQDIKNDSIIYAVFRN 114 MSMY+R+KR++ T+F+H EP + ++KA+ G+++ I L+ + D+ R++ D +++ + Q+I ND ++Y V R+ Sbjct: 1 MSMYIRLKRHNTTVFMHCEPADNFATIKAKAGKLMNIEQGQIGLFATRDKARELVDLATIGD-QEIDNDQVLYVVKRS 77
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|922428500|ref|XP_013620278.1| (PREDICTED: uncharacterized protein LOC106326875 isoform X1 [Brassica oleracea var. oleracea]) HSP 1 Score: 58.151 bits (139), Expect = 6.561e-8 Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 0 Query: 35 GFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116 F ++MY+RVKR T F+ +P ETV VK ++ ++ Q V N RL + D SLAE Q ++ND+++ R + Sbjct: 6 SFYLAMYIRVKRTKATYFIQCDPTETVLDVKQKLFTLIEQPVSNQRLVLLSTEEVLEDSKSLAE-QKVENDAVVALTLRKDD 86
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|813164004|ref|XP_012203062.1| (hypothetical protein SPRG_20603 [Saprolegnia parasitica CBS 223.65] >gi|641532270|gb|KDO26307.1| hypothetical protein SPRG_20603 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 57.7658 bits (138), Expect = 9.462e-8 Identity = 27/81 (33.33%), Postives = 53/81 (65.43%), Query Frame = 0 Query: 40 MYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVE-NIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKE 119 MY+RVKR QT F+ EP+E +K + ILG +I+L+ +++ +++ D +++A+ Q+++ND++IY + E T++ Sbjct: 1 MYLRVKRRQQTFFVLTEPHEAFVKIKETIASILGLPGPGHIQLWHTNKQKELLDVATVAD-QELENDAVIYLCLKKENTEQ 80
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|923535405|ref|XP_013713800.1| (PREDICTED: uncharacterized protein LOC106417560 isoform X1 [Brassica napus]) HSP 1 Score: 56.9954 bits (136), Expect = 1.192e-7 Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116 M+MY+RVKR T F+ +P ETV VK ++ ++ Q V N RL + + D SLAE Q ++ND+++ R + Sbjct: 1 MAMYIRVKRMKATYFIQCDPTETVLDVKEKLFTLIEQPVSNQRLVLLSTEKVLEDSKSLAE-QKVENDAVVALTLRKDD 78
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|922428502|ref|XP_013620279.1| (PREDICTED: uncharacterized protein LOC106326875 isoform X2 [Brassica oleracea var. oleracea] >gi|923526367|ref|XP_013684122.1| PREDICTED: uncharacterized protein LOC106388563 isoform X1 [Brassica napus]) HSP 1 Score: 56.9954 bits (136), Expect = 1.192e-7 Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0 Query: 38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116 M+MY+RVKR T F+ +P ETV VK ++ ++ Q V N RL + D SLAE Q ++ND+++ R + Sbjct: 1 MAMYIRVKRTKATYFIQCDPTETVLDVKQKLFTLIEQPVSNQRLVLLSTEEVLEDSKSLAE-QKVENDAVVALTLRKDD 78 The following BLAST results are available for this feature:
BLAST of EWM29315.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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