EWM29315.1, cds1358 (CDS) Nannochloropsis gaditana

Overview
NameEWM29315.1
Unique Namecds1358
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:438204..438214 -
Alignment locationCM002457.1:437993..438100 -
Alignment locationCM002457.1:437771..437909 -
Alignment locationCM002457.1:437491..437605 -
Alignment locationCM002457.1:437313..437385 -
Alignment locationCM002457.1:437111..437231 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29315.1
Productubiquitin family protein
Orig transcript idgnl|cribi|Naga_100136g19.3166.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:438204..438214 -
CM002457.1supercontigCM002457.1:437993..438100 -
CM002457.1supercontigCM002457.1:437771..437909 -
CM002457.1supercontigCM002457.1:437491..437605 -
CM002457.1supercontigCM002457.1:437313..437385 -
CM002457.1supercontigCM002457.1:437111..437231 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|585111841|gb|EWM29315.1| (ubiquitin family protein [Nannochloropsis gaditana])

HSP 1 Score: 394.045 bits (1011), Expect = 5.094e-139
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MLVMTCSSNSHSATPSACSYNSTTRDSTLIFKRPGFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEGPTAKAKNQGTRAIGSGNIFSNRLGMVKGMRRGVGAHRREPFGNEWGNEGVAGCNGSRFLRADHVYITF 188
            MLVMTCSSNSHSATPSACSYNSTTRDSTLIFKRPGFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEGPTAKAKNQGTRAIGSGNIFSNRLGMVKGMRRGVGAHRREPFGNEWGNEGVAGCNGSRFLRADHVYITF
Sbjct:    1 MLVMTCSSNSHSATPSACSYNSTTRDSTLIFKRPGFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEGPTAKAKNQGTRAIGSGNIFSNRLGMVKGMRRGVGAHRREPFGNEWGNEGVAGCNGSRFLRADHVYITF 188          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|698805996|ref|XP_009836027.1| (hypothetical protein H257_10963 [Aphanomyces astaci] >gi|574108864|gb|ETV74369.1| hypothetical protein H257_10963 [Aphanomyces astaci])

HSP 1 Score: 64.3142 bits (155), Expect = 3.564e-10
Identity = 29/82 (35.37%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVEN-IRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTK 118
            MS+Y+RVKR +QT F+  EP++T   VK  +  IL  S  N ++L+ +++ +++ D +++A+ Q+I+ND+++Y   + E T+
Sbjct:    1 MSLYLRVKRRNQTFFILAEPHDTFLKVKETLASILTLSSPNQVQLWHTNKQKELLDAATVAD-QEIENDAVVYLCLKKENTE 81          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|673045627|ref|XP_008876774.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574467436|gb|ETV94459.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 63.5438 bits (153), Expect = 5.309e-10
Identity = 28/80 (35.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVEN-IRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116
            MS+Y+RVKR +QT F+  EP++T   VK  +  IL  +  N ++L+ +++ +++ D +++A+ Q+I+ND+II+   + E 
Sbjct:    1 MSLYLRVKRRNQTFFVLAEPHDTFLKVKETLASILALTSPNQVQLWHTNKQKELLDAATVAD-QEIENDAIIFLCLKKES 79          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|635366472|emb|CCI45241.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 62.7734 bits (151), Expect = 1.265e-9
Identity = 30/78 (38.46%), Postives = 49/78 (62.82%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQD--IKNDSIIYAVFR 113
            M  Y+RVKR HQT+FL+V+P++T+ SVK  +G I     +NI+L+     +   + S+ A  +D  I ND++IY  ++
Sbjct:    1 MGPYIRVKRQHQTVFLNVQPSDTLLSVKETIGSIFQMPPQNIQLWQGLNQKTSKELSNTATIEDYGIANDTVIYMCWK 78          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|673045625|ref|XP_008876773.1| (hypothetical protein H310_11787 [Aphanomyces invadans] >gi|574467435|gb|ETV94458.1| hypothetical protein H310_11787 [Aphanomyces invadans])

HSP 1 Score: 61.6178 bits (148), Expect = 2.752e-9
Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVEN-IRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTK 118
            MS+Y+RVKR +QT F+  EP++T   VK  +  IL  +  N ++L+ +++ +++ D +++A+ Q+I+ND+II+   + E ++
Sbjct:    1 MSLYLRVKRRNQTFFVLAEPHDTFLKVKETLASILALTSPNQVQLWHTNKQKELLDAATVAD-QEIENDAIIFLCLKKENSE 81          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|298715594|emb|CBJ28147.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.8474 bits (146), Expect = 5.152e-9
Identity = 27/78 (34.62%), Postives = 53/78 (67.95%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGS-DRTRDMPDGSSLAEFQDIKNDSIIYAVFRN 114
            MSMY+R+KR++ T+F+H EP +   ++KA+ G+++      I L+ + D+ R++ D +++ + Q+I ND ++Y V R+
Sbjct:    1 MSMYIRLKRHNTTVFMHCEPADNFATIKAKAGKLMNIEQGQIGLFATRDKARELVDLATIGD-QEIDNDQVLYVVKRS 77          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|922428500|ref|XP_013620278.1| (PREDICTED: uncharacterized protein LOC106326875 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 58.151 bits (139), Expect = 6.561e-8
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 0
Query:   35 GFTMSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116
             F ++MY+RVKR   T F+  +P ETV  VK ++  ++ Q V N RL        + D  SLAE Q ++ND+++    R + 
Sbjct:    6 SFYLAMYIRVKRTKATYFIQCDPTETVLDVKQKLFTLIEQPVSNQRLVLLSTEEVLEDSKSLAE-QKVENDAVVALTLRKDD 86          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|813164004|ref|XP_012203062.1| (hypothetical protein SPRG_20603 [Saprolegnia parasitica CBS 223.65] >gi|641532270|gb|KDO26307.1| hypothetical protein SPRG_20603 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 57.7658 bits (138), Expect = 9.462e-8
Identity = 27/81 (33.33%), Postives = 53/81 (65.43%), Query Frame = 0
Query:   40 MYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVE-NIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKE 119
            MY+RVKR  QT F+  EP+E    +K  +  ILG     +I+L+ +++ +++ D +++A+ Q+++ND++IY   + E T++
Sbjct:    1 MYLRVKRRQQTFFVLTEPHEAFVKIKETIASILGLPGPGHIQLWHTNKQKELLDVATVAD-QELENDAVIYLCLKKENTEQ 80          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|923535405|ref|XP_013713800.1| (PREDICTED: uncharacterized protein LOC106417560 isoform X1 [Brassica napus])

HSP 1 Score: 56.9954 bits (136), Expect = 1.192e-7
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116
            M+MY+RVKR   T F+  +P ETV  VK ++  ++ Q V N RL      + + D  SLAE Q ++ND+++    R + 
Sbjct:    1 MAMYIRVKRMKATYFIQCDPTETVLDVKEKLFTLIEQPVSNQRLVLLSTEKVLEDSKSLAE-QKVENDAVVALTLRKDD 78          
BLAST of EWM29315.1 vs. NCBI_GenBank
Match: gi|922428502|ref|XP_013620279.1| (PREDICTED: uncharacterized protein LOC106326875 isoform X2 [Brassica oleracea var. oleracea] >gi|923526367|ref|XP_013684122.1| PREDICTED: uncharacterized protein LOC106388563 isoform X1 [Brassica napus])

HSP 1 Score: 56.9954 bits (136), Expect = 1.192e-7
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0
Query:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEG 116
            M+MY+RVKR   T F+  +P ETV  VK ++  ++ Q V N RL        + D  SLAE Q ++ND+++    R + 
Sbjct:    1 MAMYIRVKRTKATYFIQCDPTETVLDVKQKLFTLIEQPVSNQRLVLLSTEEVLEDSKSLAE-QKVENDAVVALTLRKDD 78          
The following BLAST results are available for this feature:
BLAST of EWM29315.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111841|gb|EWM29315.1|5.094e-139100.00ubiquitin family protein [Nannochloropsis gaditana... [more]
gi|698805996|ref|XP_009836027.1|3.564e-1035.37hypothetical protein H257_10963 [Aphanomyces astac... [more]
gi|673045627|ref|XP_008876774.1|5.309e-1035.00hypothetical protein, variant [Aphanomyces invadan... [more]
gi|635366472|emb|CCI45241.1|1.265e-938.46unnamed protein product [Albugo candida][more]
gi|673045625|ref|XP_008876773.1|2.752e-934.15hypothetical protein H310_11787 [Aphanomyces invad... [more]
gi|298715594|emb|CBJ28147.1|5.152e-934.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|922428500|ref|XP_013620278.1|6.561e-835.37PREDICTED: uncharacterized protein LOC106326875 is... [more]
gi|813164004|ref|XP_012203062.1|9.462e-833.33hypothetical protein SPRG_20603 [Saprolegnia paras... [more]
gi|923535405|ref|XP_013713800.1|1.192e-736.71PREDICTED: uncharacterized protein LOC106417560 is... [more]
gi|922428502|ref|XP_013620279.1|1.192e-736.71PREDICTED: uncharacterized protein LOC106326875 is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1360rna1360Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications