EWM29325.1, cds1347 (CDS) Nannochloropsis gaditana

Overview
NameEWM29325.1
Unique Namecds1347
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:412803..413894 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29325.1
Productfkbp-type peptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100136g6.3176.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:412803..413894 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|585111851|gb|EWM29325.1| (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 746.117 bits (1925), Expect = 0.000e+0
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0
Query:    1 MAPPGRYQKTCDRRRIPSHRLLLFVHSVVVVVLLSNRSAAFQHVNPPISIFERRKTTFPDGSGRFQAMSDDKTDFFNTSSCLHDSSSGPRAASLRSSHHNSFARIKGSQSTRGDFLRQGLLTAGGAAMGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQEGMAKSLQELRDKGVKVPSTKSFMTKPEILGSRRQEIELNGLPENMQ 363
            MAPPGRYQKTCDRRRIPSHRLLLFVHSVVVVVLLSNRSAAFQHVNPPISIFERRKTTFPDGSGRFQAMSDDKTDFFNTSSCLHDSSSGPRAASLRSSHHNSFARIKGSQSTRGDFLRQGLLTAGGAAMGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQEGMAKSLQELRDKGVKVPSTKSFMTKPEILGSRRQEIELNGLPENMQ
Sbjct:    1 MAPPGRYQKTCDRRRIPSHRLLLFVHSVVVVVLLSNRSAAFQHVNPPISIFERRKTTFPDGSGRFQAMSDDKTDFFNTSSCLHDSSSGPRAASLRSSHHNSFARIKGSQSTRGDFLRQGLLTAGGAAMGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQEGMAKSLQELRDKGVKVPSTKSFMTKPEILGSRRQEIELNGLPENMQ 363          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|298715511|emb|CBJ28081.1| (FKBP-type peptidyl-prolyl cis-trans isomerase [Ectocarpus siliculosus])

HSP 1 Score: 155.221 bits (391), Expect = 1.006e-40
Identity = 75/170 (44.12%), Postives = 110/170 (64.71%), Query Frame = 0
Query:  148 AANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYLQE 317
            AA   ++ ++P V   TK+G++Y+D R GEG SP+WGQ  II++  Y R++P  KL+    +   K  YL KHGNG  I+G++EG+HSM++GG RR+++P  +GY+  GLGP P +  +R ILV  L   E     GE++ D+EL+  +DDEAD GYY+D    P  LQ+
Sbjct:  106 AAGMQEEEEVPTVGKITKAGIKYFDFRVGEGPSPRWGQDCIIRFTMYGRSTPDEKLIKIQSSDNNKEKYLFKHGNGFQIKGMEEGMHSMRVGGKRRVIMPQSMGYSVQGLGPYPADPRKRDILVEVLTSFE-KTTTGELVMDIELLDAFDDEADQGYYEDTAVTPEQLQD 274          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|397615891|gb|EJK63695.1| (hypothetical protein THAOC_15633 [Thalassiosira oceanica])

HSP 1 Score: 138.658 bits (348), Expect = 5.638e-35
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 0
Query:  162 FETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDP 312
            F+T SGL+Y ++R+G G SPK+G    I Y  YV+    S+     D +     YL+KHGNGR I GLDEG+H+MK+GG RRI++P +LGY   GLGPLP   + R  L R L K  V    G ++ DVE+ S+ +DEAD GYY+D +  P
Sbjct:  106 FKTNSGLQYIELREGSGESPKYGNFVTIAYRAYVKLPDTSEKKFDLDEFDSDKAYLIKHGNGRTIPGLDEGLHTMKVGGKRRIIIPPKLGYVTNGLGPLPVGPYGRFKLYRLLEKM-VEYRGGNVVVDVEMKSIMEDEADQGYYEDDSLSP 255          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|223996725|ref|XP_002288036.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977152|gb|EED95479.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 138.658 bits (348), Expect = 1.054e-34
Identity = 78/205 (38.05%), Postives = 117/205 (57.07%), Query Frame = 0
Query:  133 SPDPDFP------RRPRHAHAAANRVQDMDLPAVA-FETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDP---GYLQEGMAKSLQELR 327
            +P+P F         P+      ++  ++D  +V  F+TKSGL+Y D+ +G G SPK+G    I Y+ +++           D +     +LVKHGNGR + GLDEG+H+MK+GG RRI+VP +LGY  +GLGP+P   + R  L R L +  V    G +++DVE+ S+ +DEAD GYYDD +  P     L++ +  S Q  R
Sbjct:   95 NPNPSFADIEGVVSVPQSTTPPESKASNLDGKSVTVFKTKSGLQYIDLVEGTGASPKYGNFITISYKAFIKLPDIQGKKSEFDEFDSDKGFLVKHGNGRNVPGLDEGLHTMKVGGKRRIIVPPKLGYVSSGLGPIPVGPYGRWKLNRLLDRM-VEAKGGNVVFDVEMKSILEDEADQGYYDDDSLSPDDFNTLRQNIESSQQASR 298          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|160331627|ref|XP_001712520.1| (fkbp-like protein [Hemiselmis andersenii] >gi|159765969|gb|ABW98195.1| fkbp-like protein [Hemiselmis andersenii])

HSP 1 Score: 129.028 bits (323), Expect = 8.813e-32
Identity = 76/207 (36.71%), Postives = 111/207 (53.62%), Query Frame = 0
Query:   90 RAASLRSSHHNSFARIKGSQSTRGDFLRQGLLTAGGAAMGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPP-NAFRRKILVRELGKAEVNDPPGEIIYDVELVSL 295
            +A+  +S    +F+     + TR +F         G     F +   DF    ++   A N    ++  ++AF TKSGL+  D   GE   P+WG   II Y  Y  +S   K+    DTY + TP+L  HG G+ I+GL+E +HSMK GG RR+V+P ELGY   GLGP+PP N+ R+K+L +E    E+ +    II D+ELV +
Sbjct:   24 KASDDKSITMKNFSNSFSEKITRKNFF--------GKFWFCFSTIGIDFSFENKNFAMAEN----LEKNSLAFSTKSGLKIIDFLPGEAQMPQWGDFVIINYVLYKNSS--QKIEKISDTYQKNTPFLFIHGGGQTIKGLEEAVHSMKKGGKRRVVIPQELGYNVPGLGPIPPENSKRKKLLSQE----ELENKSSNIILDIELVDI 212          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|1189388739|gb|OSX75750.1| (hypothetical protein BU14_0223s0022 [Porphyra umbilicalis])

HSP 1 Score: 129.413 bits (324), Expect = 2.801e-31
Identity = 68/159 (42.77%), Postives = 93/159 (58.49%), Query Frame = 0
Query:  158 PAVAFETKSGLRYYDVRKGEG-MSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFDPGYL 315
            P   F T SGLRY+D   G G   P WG +  + Y  Y  +    +L + D TYARK   LV HGNG+ I G++E +H M+ GG RR+V+P  LGYT +GLGP+PP   +R+ L + L     N+  G +++D+ELV++  D  D G Y DLT  P  L
Sbjct:  121 PETGFVTNSGLRYFDFAVGSGDRRPVWGDLLTVSYVLYTVSPEGDRLDIADSTYARKQHMLVHHGNGQTILGVEEALHGMRAGGRRRVVIPPSLGYTSSGLGPVPPRTTKRRALNKAL-----NEGNGLVVFDLELVAVLPDTNDTGLYTDLTPAPADL 274          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|922854608|gb|KOO23127.1| (amine oxidase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 122.479 bits (306), Expect = 4.267e-27
Identity = 75/192 (39.06%), Postives = 106/192 (55.21%), Query Frame = 0
Query:  117 RQGLLTAGGAAMGAFFSPDPDFPRRPRHAHAAANRVQDMDLPAVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDL 308
            R+  LT GG  M A   P+P          AA+  + +         T+SGL Y D ++G G +P++GQ+    Y GY   +    LV FD +Y R++ YLVKHGNG   +G++E +H+M++GG RR+V+P  LGYT    GP+PP A  R  L   +   E       +I+D+ELVS+ DD  D G YDDL
Sbjct:   22 RRVWLTLGG--MAAIALPNP--------TSAASGPISE------GVRTRSGLLYMDFKEGSGSTPRFGQLLRFHYVGYAPNTQKRTLVSFDSSYDRRSAYLVKHGNGFTCQGIEEALHTMRVGGRRRVVLPPALGYTADK-GPMPPGAGARSKLFDAVTAGE------PLIFDLELVSIMDDLLDRGDYDDL 190          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|399949701|gb|AFP65359.1| (fkbp-like protein (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 114.005 bits (284), Expect = 5.057e-26
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 0
Query:  152 VQDMDLP-AVAFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDL 308
            + D DL    AF TKSGL+  +  +GEG +P+WG + +I Y  Y   +P   L   D T+ R  P+L  HG G+VIRG++E +H MK+GG RR+++  E GY    LGP+PP  ++RK L  E  K E  +    I++D+ELV +  +   LG + + 
Sbjct:   71 IADDDLKNKKAFSTKSGLKILEFTEGEGKAPEWGNLLVINYVIY-ELTP-KGLDQIDSTFGRNQPFLFAHGGGQVIRGIEETVHDMKMGGKRRVILSEETGYVNPTLGPVPPLNYQRKKLF-EKNKNEFLENKKLIVFDIELVDIKKNIHTLGNFSNF 225          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|545712972|ref|XP_005708790.1| (immunophilin isoform 1 [Galdieria sulphuraria] >gi|452825272|gb|EME32270.1| immunophilin isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-25
Identity = 61/151 (40.40%), Postives = 83/151 (54.97%), Query Frame = 0
Query:  161 AFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVRELGKAEVNDPPGEIIYDVELVSLYDDEADLGYYDDLTFD 311
             F+T  G  Y D R G G SP WG + +I Y  Y       +L  F  TY  K P+  +HGNG+ I+GL+EGI SMK+GG RR+V+P  L Y+  GLGP+PP+   R+ L   L +  V      +  DVEL+ ++ D   + YY D   D
Sbjct:   99 VFKTSGGTEYVDFRVGSGDSPAWGDMVVIHYVIYTVEG--GQLRKFYSTYDDKQPFAFRHGNGQTIKGLEEGIDSMKVGGRRRMVIPGSLAYSVAGLGPIPPSTSVRRKLADSLKQGNV------LSLDVELLKIWKDPVGMEYYSDFVPD 241          
BLAST of EWM29325.1 vs. NCBI_GenBank
Match: gi|545712974|ref|XP_005708791.1| (immunophilin isoform 2 [Galdieria sulphuraria] >gi|452825273|gb|EME32271.1| immunophilin isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 109.383 bits (272), Expect = 4.838e-24
Identity = 63/160 (39.38%), Postives = 86/160 (53.75%), Query Frame = 0
Query:  161 AFETKSGLRYYDVRKGEGMSPKWGQVAIIQYEGYVRASPFSKLVLFDDTYARKTPYLVKHGNGRVIRGLDEGIHSMKLGGLRRIVVPLELGYTKTGLGPLPPNAFRRKILVREL--GKAEVN------DPPGEII-YDVELVSLYDDEADLGYYDDLTFD 311
             F+T  G  Y D R G G SP WG + +I Y  Y       +L  F  TY  K P+  +HGNG+ I+GL+EGI SMK+GG RR+V+P  L Y+  GLGP+PP+   R+ L   L  GK  +          G ++  DVEL+ ++ D   + YY D   D
Sbjct:   99 VFKTSGGTEYVDFRVGSGDSPAWGDMVVIHYVIYTVEG--GQLRKFYSTYDDKQPFAFRHGNGQTIKGLEEGIDSMKVGGRRRMVIPGSLAYSVAGLGPIPPSTSVRRKLADSLKQGKRAIQCDTFYLKQIGNVLSLDVELLKIWKDPVGMEYYSDFVPD 256          
The following BLAST results are available for this feature:
BLAST of EWM29325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111851|gb|EWM29325.1|0.000e+0100.00fkbp-type peptidyl-prolyl cis-trans isomerase [Nan... [more]
gi|298715511|emb|CBJ28081.1|1.006e-4044.12FKBP-type peptidyl-prolyl cis-trans isomerase [Ect... [more]
gi|397615891|gb|EJK63695.1|5.638e-3547.02hypothetical protein THAOC_15633 [Thalassiosira oc... [more]
gi|223996725|ref|XP_002288036.1|1.054e-3438.05predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|160331627|ref|XP_001712520.1|8.813e-3236.71fkbp-like protein [Hemiselmis andersenii] >gi|1597... [more]
gi|1189388739|gb|OSX75750.1|2.801e-3142.77hypothetical protein BU14_0223s0022 [Porphyra umbi... [more]
gi|922854608|gb|KOO23127.1|4.267e-2739.06amine oxidase [Chrysochromulina sp. CCMP291][more]
gi|399949701|gb|AFP65359.1|5.057e-2639.24fkbp-like protein (nucleomorph) [Chroomonas mesost... [more]
gi|545712972|ref|XP_005708790.1|1.482e-2540.40immunophilin isoform 1 [Galdieria sulphuraria] >gi... [more]
gi|545712974|ref|XP_005708791.1|4.838e-2439.38immunophilin isoform 2 [Galdieria sulphuraria] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1349rna1349Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications