EWM29340.1, cds1335 (CDS) Nannochloropsis gaditana

Overview
NameEWM29340.1
Unique Namecds1335
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:383400..384308 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29340.1
Productabortive infection protein
Orig transcript idgnl|cribi|Naga_100205g9.2992.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:383400..384308 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003675CAAX_protease
Homology
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|585111867|gb|EWM29340.1| (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query:    1 MGLNHVLNVLPALLLLTIIPLTRGAGFIHLSSRPCTSPFQFPHAPSPRSSSSFATTTSRTGFPCQKRQPLFQQKPPDSEAPSPEVTPSDQPSIPPPAIPRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALLTLPALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHWGRKTGGESRAG 302
            MGLNHVLNVLPALLLLTIIPLTRGAGFIHLSSRPCTSPFQFPHAPSPRSSSSFATTTSRTGFPCQKRQPLFQQKPPDSEAPSPEVTPSDQPSIPPPAIPRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALLTLPALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHWGRKTGGESRAG
Sbjct:    1 MGLNHVLNVLPALLLLTIIPLTRGAGFIHLSSRPCTSPFQFPHAPSPRSSSSFATTTSRTGFPCQKRQPLFQQKPPDSEAPSPEVTPSDQPSIPPPAIPRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALLTLPALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHWGRKTGGESRAG 302          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|397639555|gb|EJK73636.1| (hypothetical protein THAOC_04730 [Thalassiosira oceanica])

HSP 1 Score: 89.3521 bits (220), Expect = 1.162e-16
Identity = 69/232 (29.74%), Postives = 106/232 (45.69%), Query Frame = 0
Query:   76 PDSEAPSPEVTPSDQPSIPPPAIPRSPNYKTIAALVAGELLL-----------GLLAFPLGHVFKINPLATAKAASGFGPLAAVSALLTL-----PALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHW 291
            PD +A S +        +  P   RS +   I  LVA + LL           G+  + LG  F +NP A  +      PL  ++ ++ +     PAL       + +      ++  + G    K+R    +A S+LL L AG+GEE+ FRG  Q + +   G     L IS ++F  LHA TP Y LLA   SV+ G + +   NL +P++ HT++DV   +    W HW
Sbjct:  131 PDGDAKSGDDGEPASREVDGPTSLRS-DVTNILRLVATQGLLIPLSLALARAFGVANYGLGAGFSVNPAAILQGLQYCVPLFGLAGIMRVIEPYSPAL-------QGVTKATERTVLFVMGK---KRRLGFALAFSILLGLCAGVGEELLFRGVFQTLLSTKLGSSNSALCISGVVFGLLHAVTPLYALLAGAASVFFGYIYITTGNLAIPMVAHTIYDVGALI----WAHW 347          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|1149170625|ref|WP_077728585.1| (CPBP family intramembrane metalloprotease [Methylocaldum sp. 14B])

HSP 1 Score: 80.4925 bits (197), Expect = 1.882e-14
Identity = 70/195 (35.90%), Postives = 101/195 (51.79%), Query Frame = 0
Query:  100 RSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALL-TLPALLLHLTSG-------REIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYC---NLWVPILVHTLFDVVGFM 283
            R   +  IA    G L+L  LA+ +G    INPLA      GF P+A V  ++ TLP  LL   S        R +++ L E L    G   ++ R   ++ +  L    AG+ EE+ FRG LQP F Q  G  + G+  S+L+FA +H  TP Y LLA +  VYLG + L +    NL +PIL+H ++D + F+
Sbjct:    9 RYNQFLKIATWFEGGLIL--LAYVIGWAVSINPLAHI----GFSPMALVWGIVGTLPLYLLFALSYNLPWSGMRAVKNFLVEKL----GPFLSRYRWQELLYLGFL----AGISEEILFRGLLQPWFEQNWGW-IGGIAFSNLVFALVHWVTPLYALLAGLTGVYLG-IALDFGGERNLVIPILIHAIYDFLAFI 187          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|1196470826|ref|WP_086134894.1| (CPBP family intramembrane metalloprotease [Methylocaldum sp. SAD2])

HSP 1 Score: 79.7221 bits (195), Expect = 3.350e-14
Identity = 70/195 (35.90%), Postives = 101/195 (51.79%), Query Frame = 0
Query:  100 RSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALL-TLPALLLHLTSG-------REIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYC---NLWVPILVHTLFDVVGFM 283
            R   +  IA    G L+L  LA+ +G    INPLA      GF P+A V  ++ TLP  LL   S        R +++ L E L    G   ++ R   ++ +  L    AG+ EE+ FRG LQP F Q  G  + G+  S+L+FA +H  TP Y LLA +  VYLG + L +    NL +PIL+H ++D + F+
Sbjct:    9 RYNQFLKIATWFEGGLIL--LAYVIGWAVSINPLAHI----GFSPMALVLGIVGTLPLYLLFALSYNLPWSGMRAVKNFLVEKL----GPFLSRYRWQELLYLGFL----AGISEEILFRGLLQPWFEQNWGW-IGGIAFSNLVFALVHWVTPLYALLAGLTGVYLG-IALDFGGERNLVIPILIHAIYDFLAFI 187          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|219123986|ref|XP_002182295.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406256|gb|EEC46196.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 81.2629 bits (199), Expect = 5.623e-14
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 0
Query:  167 IEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHW 291
            ++D+ + +   I        +P      ++ L L+AG GEE+ FRG LQ   A   G P+  +G +S++F ALHA TP Y  LA + SVY G + L + NL VPI  HT++DV       ++ HW
Sbjct:  175 LQDVTKATQRSILALMGGTFKPLFAFFTALALGLAAGFGEEMLFRGILQYELANRFG-PVLAVGAASIVFGALHAVTPLYAFLATLASVYFGAIYLAFDNLAVPIWCHTIYDVGAL----YYAHW 294          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|1183541084|emb|SMG67299.1| (Abortive infection protein [methanotrophic bacterial endosymbiont of Bathymodiolus sp.])

HSP 1 Score: 78.9518 bits (193), Expect = 7.009e-14
Identity = 67/202 (33.17%), Postives = 104/202 (51.49%), Query Frame = 0
Query:   89 DQPSIPPPAIPRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALL-TLPALLLHLTSGR-EIEDM--LRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYC---NLWVPILVHTLFDVVGFM 283
            ++PSI P    ++   K  AAL+       L+A  LG +  INP         F   A ++ ++ TLP  LL +   + E++ +  +R+ L    G    K     +I ++ +    AG+ EE+ FRG +QP    A G  M GL +SS++F  +HA T  YFL+A  +S+YLG L L Y    NL  PI++H+L+D   F+
Sbjct:    2 NEPSIDPDNFFKTAC-KFEAALI-------LVAIVLGWIAAINPFQFII----FDEQAIINGIIGTLPLCLLFIALNQLELKSLQKIRQVLHQTLGPSLYKHHWTDLIVLAAI----AGISEEILFRGVIQPWMENAWGM-MAGLVVSSILFGLVHAVTALYFLMATAVSIYLG-LHLDYHNSRNLLTPIIIHSLYDFFAFV 185          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|223995221|ref|XP_002287294.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976410|gb|EED94737.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 78.1814 bits (191), Expect = 6.414e-13
Identity = 67/228 (29.39%), Postives = 104/228 (45.61%), Query Frame = 0
Query:  103 NYKTIAALVAGELLL--------GLLAFP---LGHVFKINPLATAKAASGFGPLAAVSALLTL-----PALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISS-------LIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHWG-----RKTGGESRAG 302
            + + I  LV  + LL         +L  P   LG  F +N  AT +      PL  ++ ++ +     PAL       +++    + S+  + GS   ++RP   + +S+LL   AG GEE  FRG  Q   ++  G+ +  LG+S        ++F  LHA TP Y LLA   S++ G L   Y NL VP++ H ++D+   M    W HW      +K   E  AG
Sbjct:   87 DLQNIGTLVGAQTLLVPISIFVANMLRLPNRGLGSGFILNSAATIQGIQWTIPLFVIAGIMRVIEPYSPAL-------QDVTKATQRSVLAVMGS---RRRPVFALLVSILLGAVAGWGEEWLFRGVFQTSMSRLFGEGI-ALGVSGHPSILFRVVFGLLHAVTPVYALLAGAASLFFGYLYNTYGNLAVPMVCHAVYDIGALM----WAHWSVTALTKKEQDEIMAG 299          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|1170132594|ref|WP_080523235.1| (CPBP family intramembrane metalloprotease [Methyloprofundus sedimenti] >gi|1169186223|gb|OQK18637.1| abortive infection protein [Methyloprofundus sedimenti])

HSP 1 Score: 75.8702 bits (185), Expect = 7.398e-13
Identity = 61/202 (30.20%), Postives = 103/202 (50.99%), Query Frame = 0
Query:   89 DQPSIPPPAIPRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALL-TLPALLLHLTSGR-EIEDM--LRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYC---NLWVPILVHTLFDVVGFM 283
            ++P+I P    ++  Y         E  L L+A  +G +  INP         F   A ++ ++ TLP  L+ +   + ++E +  +++ L    G    K+  A +  ++ +    AG+ EE+ FRG +QP    + G  M GL +SS+IF  +HA T  YF++A  +S+YLG L L Y    NL  PI++H+L+D   F+
Sbjct:    2 NEPTIDPDNFFKTACY--------FESSLVLVAIAIGWLVDINPFEFIV----FNEQAVINGIMGTLPLCLIFIALNQLQLESLQKIKQVLHSTLGPSLHKRHWADLFVLAAV----AGISEEILFRGVIQPWMENSWG-LMAGLLVSSVIFGLVHAVTALYFIMATAVSIYLG-LYLDYDNTRNLLTPIIIHSLYDFFAFV 185          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|1072225179|gb|OEU09927.1| (Abi-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.7146 bits (182), Expect = 1.973e-12
Identity = 42/121 (34.71%), Postives = 64/121 (52.89%), Query Frame = 0
Query:  167 IEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHF 287
            ++D+ + +   +        RP +    ++ L ++AG+GEE+ FRG LQ       G     +GI+S+IF ALHA TP Y  LA + SVY G L L   NL +PI+ H  +D    +  H+
Sbjct:   64 LQDVTKATQSSVLSLLGGTFRPIIGTITALALGVAAGLGEEMLFRGVLQNELGIRIGSDYIAVGIASIIFGALHAVTPLYAGLAGLASVYFGWLYLATGNLAIPIVTHAFYDWAALLYAHW 184          
BLAST of EWM29340.1 vs. NCBI_GenBank
Match: gi|299471514|emb|CBN80000.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6406 bits (187), Expect = 3.762e-12
Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = 0
Query:  130 INPLATAKAASGFGPLAAVSALLTLPALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGL-GISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNH 286
            ++P ATA   +G  PL     LL            R+I++   E    +FGS   K++   V  + + LS+  G+ EE AFRG L  I A  TG PM  + G+S+ IF +LHAAT  YFL A +  ++   L L   N++VPI+ H ++D +  ++ H
Sbjct:  218 VSPAATALGVAGMVPLLGYGLLLDR---WTEWEWVRKIDEATSEVALQLFGS---KRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYH 369          
The following BLAST results are available for this feature:
BLAST of EWM29340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111867|gb|EWM29340.1|0.000e+0100.00abortive infection protein [Nannochloropsis gadita... [more]
gi|397639555|gb|EJK73636.1|1.162e-1629.74hypothetical protein THAOC_04730 [Thalassiosira oc... [more]
gi|1149170625|ref|WP_077728585.1|1.882e-1435.90CPBP family intramembrane metalloprotease [Methylo... [more]
gi|1196470826|ref|WP_086134894.1|3.350e-1435.90CPBP family intramembrane metalloprotease [Methylo... [more]
gi|219123986|ref|XP_002182295.1|5.623e-1436.80predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1183541084|emb|SMG67299.1|7.009e-1433.17Abortive infection protein [methanotrophic bacteri... [more]
gi|223995221|ref|XP_002287294.1|6.414e-1329.39predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1170132594|ref|WP_080523235.1|7.398e-1330.20CPBP family intramembrane metalloprotease [Methylo... [more]
gi|1072225179|gb|OEU09927.1|1.973e-1234.71Abi-domain-containing protein, partial [Fragilario... [more]
gi|299471514|emb|CBN80000.1|3.762e-1234.81conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1337rna1337Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications