EWM29366.1, cds1326 (CDS) Nannochloropsis gaditana

Overview
NameEWM29366.1
Unique Namecds1326
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:356528..358105 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29366.1
Producth aca ribonucleoprotein complex subunit 4
Orig transcript idgnl|cribi|Naga_100028g51.3302.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:356528..358105 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR002501PsdUridine_synth
IPR004521Uncharacterised_CHP00451
IPR015947PUA-like_domain
IPR004802tRNA_PsdUridine_synth_B_fam
IPR012960Dyskerin-like
IPR002478PUA
Homology
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|585111894|gb|EWM29366.1| (h aca ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 1074.31 bits (2777), Expect = 0.000e+0
Identity = 525/525 (100.00%), Postives = 525/525 (100.00%), Query Frame = 0
Query:    1 MMSHFVSHREIHPDVLSHPHDGIATVGMGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAAEKKKKKKKSKGEE 525
            MMSHFVSHREIHPDVLSHPHDGIATVGMGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAAEKKKKKKKSKGEE
Sbjct:    1 MMSHFVSHREIHPDVLSHPHDGIATVGMGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAAEKKKKKKKSKGEE 525          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|553184600|ref|XP_005854117.1| (H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana CCMP526] >gi|422294938|gb|EKU22238.1| H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1014.6 bits (2622), Expect = 0.000e+0
Identity = 498/498 (100.00%), Postives = 498/498 (100.00%), Query Frame = 0
Query:   28 MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAAEKKKKKKKSKGEE 525
            MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAAEKKKKKKKSKGEE
Sbjct:    1 MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAAEKKKKKKKSKGEE 498          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|224003359|ref|XP_002291351.1| (hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana CCMP1335] >gi|220973127|gb|EED91458.1| hypothetical protein THAPSDRAFT_508 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 681.019 bits (1756), Expect = 0.000e+0
Identity = 326/430 (75.81%), Postives = 369/430 (85.81%), Query Frame = 0
Query:   55 MIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPA-AQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDE 483
            MI P + TPKLDTS WPLLLKNY  LH+RT+ YTPIP GSSPL R LK+++  GVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQ AGKEYVGVVRLH A+E   +L RAVETLTGALFQRPPLI+AVKRQLRIRTIYESKL+EYDEKR+LG+FWVSCEAGTY+RTLCVHLGLLVGTGGHMQELRRVRSGVL END+L+TMHDV+DAQ+ YDT KDE YLRR V+PLE L  N KR+VVKDSAVNAICYGA+LMIPGLLRFAD I++N EVV++TTKGEAIAVGIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP+A +KKGL+KEGKLDKHG+PN +TP+D+LE ++   G A A +  G    S       K +++K +   A +E   + SGDE
Sbjct:    1 MIAPSSHTPKLDTSAWPLLLKNYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYVGVVRLHSALEDTKQLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDEKRNLGIFWVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVLDENDNLVTMHDVMDAQHVYDTTKDEKYLRRVVMPLETLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRFADDIDINQEVVLMTTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQRKKGLIKEGKLDKHGKPNEKTPKDFLEGYKSVEGAAKAPTLGGANGGSTTTPAKIKSEEAKPDSPTAMDE--DSNSGDE 428          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|397574046|gb|EJK48998.1| (hypothetical protein THAOC_32164 [Thalassiosira oceanica])

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 314/412 (76.21%), Postives = 360/412 (87.38%), Query Frame = 0
Query:   30 KKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPA 441
            K   K   A NGEA  + G    + MI+P   TPKLDTS WPLLLKNY  LH+RT+ YTPIP GSSPL R LK+++  GVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVKAQQ AGKEY+GVVRLH AI+   KL RAVETLTGALFQRPPLI+AVKRQLRIRTIYESKL+EYD++R+LG+FWVSCEAGTY+RTLCVHLGLLVGTGGHMQELRRVRSGV+ E D+L+TMHDV+DAQ+ +DT KDE YLRR V+PLE+L  N KRVVVKDSAVNAICYGA+LMIPGLLRFAD I++N EVV++TTKGEAIAVGIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLG +AT+KK L+KEGKLD++G+ N +TP+D+LE ++  +G A
Sbjct:   34 KHSSKKRKAENGEAEDSGG---AQPMIEPSKHTPKLDTSNWPLLLKNYSDLHIRTSHYTPIPCGSSPLARNLKDHISSGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKAQQSAGKEYIGVVRLHSAIDDNKKLHRAVETLTGALFQRPPLISAVKRQLRIRTIYESKLIEYDDQRNLGIFWVSCEAGTYVRTLCVHLGLLVGTGGHMQELRRVRSGVMAEKDNLVTMHDVMDAQHVFDTTKDEKYLRRVVMPLEVLLTNYKRVVVKDSAVNAICYGAKLMIPGLLRFADDIDINQEVVLMTTKGEAIAVGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGAMATRKKALIKEGKLDRYGKVNEKTPKDFLEGYKSVDGAA 442          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|1072229922|gb|OEU14656.1| (Dkc1 protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 664.455 bits (1713), Expect = 0.000e+0
Identity = 318/463 (68.68%), Postives = 372/463 (80.35%), Query Frame = 0
Query:   28 MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFE--GKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGE 488
            MG   KK     N +  A     S+  MI P  +TPKLDTS WPLLLKNY QLHVRT+ YTP+P GSSPL RPL  +L YGVINLDKPANPSSHEVV+WIK+ILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVK+QQ AGKEYV V RLH A +  +K+ R+VETLTGALFQRPPLI+AVKRQLRIRTIYESKLLEYDE+R+LGV W+SCEAGTY+RTLCVHLGLL G GGHMQELRRVRSG L E D+L+TMHDVLDAQ+ YDT KDE+YLRR V+PLE+L    KR+VVKDSAVNAICYGA+ MIPGLLRFADGIE+NDEVV++TTKGEAIAV IAQMTTAVMAT DHG+VAKIKRV+MERD YPRRWGLGP+A +KK ++K+GKLDKHG+PN +TP D+L++++   K+ P A SG G      ++++ K E  + ++   + +        D GN  +
Sbjct:    1 MGSSTKKRK---NDDGTAVAVASSSTSMIAPSNSTPKLDTSNWPLLLKNYHQLHVRTSHYTPLPCGSSPLARPLNHHLSYGVINLDKPANPSSHEVVSWIKKILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSAGKEYVAVARLHSACD-VAKVQRSVETLTGALFQRPPLISAVKRQLRIRTIYESKLLEYDEERNLGVLWLSCEAGTYVRTLCVHLGLLTGAGGHMQELRRVRSGALAEKDNLVTMHDVLDAQHVYDTTKDETYLRRVVMPLEVLLTKYKRIVVKDSAVNAICYGAKFMIPGLLRFADGIELNDEVVLMTTKGEAIAVAIAQMTTAVMATVDHGVVAKIKRVIMERDVYPRRWGLGPMAQRKKSMIKDGKLDKHGKPNEKTPTDFLKSYKDFSKSKPPALSGEGAASSPAKSEDAKIETTNGEDNDDSKKRSKEDRGSDSGNSSD 459          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|551658687|ref|XP_005832113.1| (hypothetical protein GUITHDRAFT_71484 [Guillardia theta CCMP2712] >gi|428176248|gb|EKX45133.1| hypothetical protein GUITHDRAFT_71484 [Guillardia theta CCMP2712])

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 305/416 (73.32%), Postives = 360/416 (86.54%), Query Frame = 0
Query:   53 EFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEK 468
            ++ IKPE  TPK+DTS WPLLLKNYD+L++RT  YTPIP G SPLKRP+ EY+RYGVINLDKPANPSSHEVVAWI+RILRV+KTGHSGTLDPKVTGCLIVC++RATRLVK+QQGAGKEYV + RLHGAIE E+K  +A+E L GA+FQRPPLI+AVKRQLRIRTIYESK++E+D++R+LGVFW+SCEAGTY+RT+CVH+GLL+G GGHMQELRRVRSG LTE+D+LMTMHDVLDAQ+ YDTYKDESYLRR +LPLE L    KRVVVKDSAVNAICYGA+LMIPGLLRF DGIE+  E+VM+TTKGEAI +GIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP A  KK ++ +GKLDK+GRPNA TP ++   ++  +G  +      +VES + +E    KK KKE+
Sbjct:   18 DYTIKPEDVTPKIDTSNWPLLLKNYDKLNIRTGHYTPIPNGCSPLKRPILEYVRYGVINLDKPANPSSHEVVAWIRRILRVDKTGHSGTLDPKVTGCLIVCVERATRLVKSQQGAGKEYVSIARLHGAIESENKFAKALEKLKGAIFQRPPLISAVKRQLRIRTIYESKMIEFDKERNLGVFWISCEAGTYVRTMCVHIGLLLGVGGHMQELRRVRSGALTEHDNLMTMHDVLDAQWMYDTYKDESYLRRVILPLERLLTGYKRVVVKDSAVNAICYGAKLMIPGLLRFEDGIEIGTEIVMITTKGEAICLGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPQAKAKKQMIIDGKLDKYGRPNANTPSNWQNLYKDLSGNQSTPA---KVES-QKEEEPASKKRKKER 429          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|1210529302|dbj|GAX11936.1| (H/ACA ribonucleoprotein complex subunit 4 [Fistulifera solaris])

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 320/445 (71.91%), Postives = 367/445 (82.47%), Query Frame = 0
Query:   28 MGKKDK-KAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVET-LTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFE--GKNGPAAQSGAGER-VES-GEAKEVKKEKKSKK 466
            MG   K K   A++G A   T   S   MI+P + TPKLDTS WPLLLKNY +LH+RTA YTP+P GSSPL R L ++L YGVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVKAQQ AGKEY+GV+RLH A+E    L RA+ET L GALFQRPPLI+AVKRQLRIRTIY+SKLLE+D +R LGVFWV CEAGTY+RTLCVH GLLVGTGGHMQELRRV+SGVL E D+++TMHDVLDAQ+ YD  KDE+YLRR V+PLE+L  N KR+VVKDS VNAICYGA+ MIPGLLRFADGIE+  EVV++TTKGEAIAV +AQMTTAVMATCDHG+VAKIKRV+MERD YPRRWGLGP+A +KK L+KEGKLDKHG+PN +TP D+L +++   K+ P A SG GE  VE+  EA EV      KK
Sbjct:    1 MGSDSKAKKRKASDGGAIVET---SVGAMIQPASHTPKLDTSQWPLLLKNYHELHIRTAHYTPLPTGSSPLARTLPQHLSYGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCLDRATRLVKAQQSAGKEYIGVLRLHDALEDTKVLQRAMETTLRGALFQRPPLISAVKRQLRIRTIYDSKLLEFDAERRLGVFWVQCEAGTYVRTLCVHAGLLVGTGGHMQELRRVKSGVLGEADNMVTMHDVLDAQHVYDQTKDETYLRRVVMPLEVLLTNYKRLVVKDSCVNAICYGAKFMIPGLLRFADGIEIGTEVVLMTTKGEAIAVAVAQMTTAVMATCDHGVVAKIKRVIMERDVYPRRWGLGPMAQRKKNLIKEGKLDKHGKPNDQTPSDFLTSYKDFSKSNPPALSGGGEALVETPAEAMEVDDNGDGKK 442          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|1210527166|dbj|GAX14139.1| (H/ACA ribonucleoprotein complex subunit 4 [Fistulifera solaris])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 317/448 (70.76%), Postives = 366/448 (81.70%), Query Frame = 0
Query:   28 MGKKDK-KAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVET-LTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFE--GKNGPAAQSGAGERV--ESGEAKEVKKEKKSKKEKA 469
            MG   K K   A++G A   T   S   MI+P + TPKLDTS WPLLLKNY +LH+RTA YTP+P GSSPL R L ++L YGVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVKAQQ AGKEY+GV+RLH A+E    L RA+ET L GALFQRPPLI+AVKRQLRIRTIY+SKLLE+D +R LGVFWV CEAGTY+RTLCVH GLLVGTGGHMQELRRV+SGVL E D+++TMHDVLDAQ+ YD  +DE+YLRR V+PLE+L  N KR+VVKDS VNAICYGA+ MIPGLLRFADGIE+  EVV++TTKGEAIAV IAQMTTAVMATCDHG+VAKIKRV+MERD YPRRWGLGP+A +KK L+KEGKLDKHG+PN +TP D+L +++   K+ P A SG+ E +     E  EV  +   KK  A
Sbjct:    1 MGSDSKAKKRKASDGGAIVET---SVGAMIQPASHTPKLDTSQWPLLLKNYHELHIRTAHYTPLPTGSSPLARTLPQHLSYGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCLDRATRLVKAQQSAGKEYIGVLRLHDALEDTKVLQRAMETTLRGALFQRPPLISAVKRQLRIRTIYDSKLLEFDAERRLGVFWVQCEAGTYVRTLCVHAGLLVGTGGHMQELRRVKSGVLGEADNMVTMHDVLDAQHVYDQTRDETYLRRVVMPLEVLLTNYKRLVVKDSCVNAICYGAKFMIPGLLRFADGIEMGTEVVLMTTKGEAIAVAIAQMTTAVMATCDHGVVAKIKRVIMERDVYPRRWGLGPMAQRKKNLIKEGKLDKHGKPNDQTPSDFLTSYKDFSKSNPPALSGSSEAIVETPAEGMEVDDDGDDKKRPA 445          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|813102261|ref|XP_012193765.1| (H/ACA ribonucleoprotein complex subunit 4 [Saprolegnia parasitica CBS 223.65] >gi|641541680|gb|KDO35425.1| H/ACA ribonucleoprotein complex subunit 4 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 650.588 bits (1677), Expect = 0.000e+0
Identity = 300/388 (77.32%), Postives = 341/388 (87.89%), Query Frame = 0
Query:   55 MIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAA 442
            +I PET+TPKLDTS WPLLLKNY  L+VRT  YTPIP GS+PLKR + +Y+RYGVINLDKPANPSSHEVVAWI+RILRVEKTGHSGTLDPKVTGCLIVC+DRATRLVK+QQGAGKEYV +VRLH AIE ++ + RA+ETLTGALFQRPPLI+AVKRQLRIRTIY SKL+EYD +RHLGVF VSCEAGTYIRTLCVHLGL++G G HMQELRRVRSGVL E D ++TMHDVLDAQYA+DTYKDESYLRR V PLE+L    KR+VVKDSAVNA+CYGA+ M+PGLLRFAD I+VN+EVV++TTKGEAIA+GIAQMTTAVMATCDHG+VAKIKRV+MERDTYPRRWGLGP+A K KGL+KEGK+ K G+ N  TP D    +  +  P A
Sbjct:   16 LIAPETSTPKLDTSKWPLLLKNYSDLNVRTGHYTPIPSGSTPLKRNIHDYIRYGVINLDKPANPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQGAGKEYVAIVRLHSAIESQATMARAIETLTGALFQRPPLISAVKRQLRIRTIYSSKLIEYDNERHLGVFHVSCEAGTYIRTLCVHLGLVLGVGAHMQELRRVRSGVLGEADTMVTMHDVLDAQYAFDTYKDESYLRRIVRPLEVLLTTYKRIVVKDSAVNAVCYGAKFMVPGLLRFADDIDVNEEVVLMTTKGEAIAIGIAQMTTAVMATCDHGVVAKIKRVIMERDTYPRRWGLGPMAQKVKGLVKEGKIGKFGKVNEATPADVSAVYSKQAAPVA 403          
BLAST of EWM29366.1 vs. NCBI_GenBank
Match: gi|219120454|ref|XP_002180965.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407681|gb|EEC47617.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 326/495 (65.86%), Postives = 385/495 (77.78%), Query Frame = 0
Query:   31 KDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVET-LTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFE--GKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKK-----KKKKEKKRPAEGSASSPEAAEKKKK 517
            K  K   A +G A A T   S   MI P + TPKLDTS WPLLLKNY +LHVRTA YTP+P GSSPL R L+++L+YGVINLDKPANPSSHEVV+WIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQ AGKEY+GVVRLH A++   +L RA+ET LTGALFQRPPLI+AVKRQLRIRTIY+SKLLE+D +R+LGVFWV CEAGTYIRTLCVH GLLVGTGGHMQELRRV+SGVL E D+L+T+HDV+DAQ+ YDT KDE+YLRR V+PLE L  N KR+VVKDSAVNAICYGA+LMIPGLLRFAD IE+N EVV++TTKGEAIAV +AQMTTAVMAT DHG+VAKIKRV+MERD YPRRWGLGP+A +KK ++KEGKLDKHG+PN +TP ++L++++   K+ P    G GE    G A                    VA+++GD+    E++KK     K + +   P +      +  +K KK
Sbjct:    6 KSAKKRKADDGSAVAET---SAGPMITPSSHTPKLDTSKWPLLLKNYHELHVRTAHYTPLPTGSSPLARTLEQHLQYGVINLDKPANPSSHEVVSWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKEYIGVVRLHAALDDPKQLTRAIETTLTGALFQRPPLISAVKRQLRIRTIYDSKLLEFDGERNLGVFWVKCEAGTYIRTLCVHAGLLVGTGGHMQELRRVKSGVLGEEDNLVTLHDVMDAQHVYDTTKDETYLRRVVMPLETLLTNYKRIVVKDSAVNAICYGAKLMIPGLLRFADDIELNQEVVLMTTKGEAIAVALAQMTTAVMATVDHGVVAKIKRVIMERDVYPRRWGLGPMAQRKKSMIKEGKLDKHGKPNEKTPSNFLDSYKDYSKSKPPVLDGNGEPTTPGSAS-------------------VASSNGDKMEVDESEKKRPSSPKSEDDDDAPQKKKDKKDKKKKKDKK 478          
The following BLAST results are available for this feature:
BLAST of EWM29366.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111894|gb|EWM29366.1|0.000e+0100.00h aca ribonucleoprotein complex subunit 4 [Nannoch... [more]
gi|553184600|ref|XP_005854117.1|0.000e+0100.00H/ACA ribonucleoprotein complex subunit 4 [Nannoch... [more]
gi|224003359|ref|XP_002291351.1|0.000e+075.81hypothetical protein THAPSDRAFT_508 [Thalassiosira... [more]
gi|397574046|gb|EJK48998.1|0.000e+076.21hypothetical protein THAOC_32164 [Thalassiosira oc... [more]
gi|1072229922|gb|OEU14656.1|0.000e+068.68Dkc1 protein [Fragilariopsis cylindrus CCMP1102][more]
gi|551658687|ref|XP_005832113.1|0.000e+073.32hypothetical protein GUITHDRAFT_71484 [Guillardia ... [more]
gi|1210529302|dbj|GAX11936.1|0.000e+071.91H/ACA ribonucleoprotein complex subunit 4 [Fistuli... [more]
gi|1210527166|dbj|GAX14139.1|0.000e+070.76H/ACA ribonucleoprotein complex subunit 4 [Fistuli... [more]
gi|813102261|ref|XP_012193765.1|0.000e+077.32H/ACA ribonucleoprotein complex subunit 4 [Saprole... [more]
gi|219120454|ref|XP_002180965.1|0.000e+065.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1328rna1328Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications