EWM29378.1, cds1308 (CDS) Nannochloropsis gaditana

Overview
NameEWM29378.1
Unique Namecds1308
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:299206..300306 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29378.1
ProductKua-ubiquitin conjugating enzyme hybrid, localization
Orig transcript idgnl|cribi|Naga_100028g29.3314.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:299206..300306 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019547Kua
Homology
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|585111906|gb|EWM29378.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0
Query:    1 MKPYPIVTIATLAIGAVAVHGFVIPAPSSRRISHDPWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366
            MKPYPIVTIATLAIGAVAVHGFVIPAPSSRRISHDPWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME
Sbjct:    1 MKPYPIVTIATLAIGAVAVHGFVIPAPSSRRISHDPWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|553185331|ref|XP_005854236.1| (hypothetical protein NGA_0194500 [Nannochloropsis gaditana CCMP526] >gi|422294827|gb|EKU22127.1| hypothetical protein NGA_0194500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0
Identity = 253/254 (99.61%), Postives = 254/254 (100.00%), Query Frame = 0
Query:  113 MVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366
            MVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLA+VALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME
Sbjct:    1 MVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAVVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 254          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|1210524703|dbj|GAX16603.1| (ubiquitin-conjugating enzyme E2 variant [Fistulifera solaris])

HSP 1 Score: 209.92 bits (533), Expect = 1.282e-61
Identity = 132/319 (41.38%), Postives = 178/319 (55.80%), Query Frame = 0
Query:   45 YVDVLQSTTLPS--DTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIV----EKKSKRRGPPPPVMVADGDVLESS----WIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHL--SKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVG 351
            +V V   T  PS    P   S S  T+ L     + +AS V+++     S ++D  V    +   +R     P++V DGD LE+      +  S +  H    + AM  + +    N  + P  L M + T A  VL +D  SGI HWSVDNYGNG+TP++G +I AFQGHH APWTIT R F NNV+K+      A + ++ L  + P   LFAT F  L++LSQEFHK SH+  S+ P W  RLQ LGL +SRK HG HH +P+E NY I++G  NR+LD++GFFR LE  +Y   GV  N WK   SE +   L G
Sbjct:   12 FVSVQSFTVAPSVHRRPSTFSLSSATS-LNHQQEIQEASGVTSKK----SWKDDGFVFGLSDSGLQRPKGKAPIIVVDGDSLETKPYQVVLVLSTLLGHAAFFVCAMMGIWAQQ--NYQLGPAALQMTSLTLASWVL-ADLGSGILHWSVDNYGNGRTPIMGGIIAAFQGHHSAPWTITQRGFCNNVYKLCLPFGLAPVTLLTLLGAGPQTILFATTFCVLEILSQEFHKWSHMLGSETPGWVNRLQSLGLTVSRKTHGLHHLAPYEGNYSIISGVTNRVLDQTGFFRRLEHLIYRWNGVEANAWKL-DSELKERTLRG 321          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|873232276|emb|CEM05794.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 207.994 bits (528), Expect = 1.383e-60
Identity = 114/296 (38.51%), Postives = 158/296 (53.38%), Query Frame = 0
Query:   43 LRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 338
            +RY D +++ + P                 P   V   + VS E+  P + +  R + K         P ++ +GD  + +           LVT   +    +  A        +  +++    F++LF D FSG+FHW+VDNYGN  TPV G+VIE FQGHH  PWTITYR F+NNV+KI    +  M     L  + P V +F T+F   QV++QEFHK SH++KPP    RLQ +GL++ RKEHG HHS PFE +Y IL G  N +LD S  FR +E+A+Y   G MPN WK
Sbjct:   69 IRYTDYVETASFP-----------------PESSVLSTAEVSEESAAPAAPKRRRPLSKD--------PQLIVEGDSTQVT-------PYQQLVTYGTLALALAAIAQALVSDASNPALMSLMVPFALLFGDLFSGVFHWAVDNYGNKNTPVFGSVIEGFQGHHKYPWTITYRPFANNVYKICYGVLLIMATTFILQ-APPAVRVFMTVFGLSQVMAQEFHKYSHMTKPPIIVQRLQGMGLMLPRKEHGLHHSEPFEGHYSILFGWFNPLLDHSQVFRLMERAIYKWNGHMPNSWK 331          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|397568714|gb|EJK46293.1| (hypothetical protein THAOC_35043 [Thalassiosira oceanica])

HSP 1 Score: 206.838 bits (525), Expect = 2.488e-60
Identity = 106/244 (43.44%), Postives = 144/244 (59.02%), Query Frame = 0
Query:  113 MVADGDVLESSWIHRSYVATHYLV-TLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKIT-KITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKP--PAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGR 352
            +V +GD LE++      V++ + V    A   + + +    G          AT   S + +DF SGIFHWSVDNYGNG+TP++G +I AFQGHH APWTI YR F NNV+K+     IP + AI  L   + +  LF T F  ++++SQE HK SH +K   P+    LQDLG+ I R  H +HH++PFE NYCI++G CN  LD SGFFR++E  VY + GV  N WK    E +   L G+
Sbjct:   91 VVVEGDSLETTPFQVGLVSSTFAVQAFFAANAIHTLFEQTNGDVGQTAAFSVATVVASWVAADFGSGIFHWSVDNYGNGRTPIMGNIIAAFQGHHSAPWTIAYRGFCNNVYKLCIPFGIPTVAAINYLSGDNSMAALFFTFFCWIEIMSQELHKWSHQTKAEVPSIVNVLQDLGITIGRVPHAKHHTAPFEGNYCIVSGLCNETLDRSGFFRWMEHTVYKINGVESNAWKL-DPELKERTLSGK 333          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|223995549|ref|XP_002287448.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976564|gb|EED94891.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 197.593 bits (501), Expect = 6.918e-59
Identity = 92/173 (53.18%), Postives = 124/173 (71.68%), Query Frame = 0
Query:  169 SVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKIT-KITIPAMLAIVALH-PSSPLVTLFATLFFNLQVLSQEFHKLSHLSKP--PAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCW 337
            S + +DF SG+FHWSVDNYGNG+TPV+G++I AFQGHH APWTITYR F NNV K+     +P + AI  +  P + +VTLF T F  ++++SQE HK SH++K   PA+   LQ LG+ I+R  H QHH +P++ NYCI++G CN  LD+SGFFR++E  VY++ GV  N W
Sbjct:    2 SWVLADFGSGVFHWSVDNYGNGRTPVMGSIIAAFQGHHSAPWTITYRGFCNNVWKLCIPFGLPTVAAISYIAGPENSMVTLFFTFFCAIEIMSQELHKWSHMTKKETPAFVNTLQALGVTIARVPHAQHHLAPYDGNYCIVSGLCNETLDKSGFFRWMEHKVYELNGVESNAW 174          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|1210511832|dbj|GAX29072.1| (ubiquitin-conjugating enzyme E2 variant [Fistulifera solaris])

HSP 1 Score: 199.904 bits (507), Expect = 9.310e-58
Identity = 117/249 (46.99%), Postives = 147/249 (59.04%), Query Frame = 0
Query:  114 VADGDVLESSWIHRSYVATHYLVTLAA-----MQQVASTYAG-NGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHP---SSPLVTLFATLFFNLQVLSQEFHKLSHL--SKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVG 351
            V DGD LE+    + Y     L TL       M  +   +A  N  + P  L   + T A  VL +D  SGI HWSVDNYGNG+TP++G +I AFQGHH APWTIT R F NNV+   K+ +P  LA V L     + P   LFAT F  L++LSQEFHK SH+  S+ P W  RLQ LGL +SRK HG HH +P+E NY I++G  NR+LD++GFFR LE  +Y   GV  N WK   +E +   L G
Sbjct:   82 VVDGDSLET----KPYQVVLVLSTLFGHAAFFMNAMMGIWAQQNYQLGPAALQTTSLTLASWVL-ADLGSGILHWSVDNYGNGRTPIMGGIIAAFQGHHSAPWTITQRGFCNNVY---KLCLPFGLAPVTLLTWLGAGPQTILFATTFCVLEILSQEFHKWSHMLGSETPGWVNRLQALGLTVSRKTHGLHHLAPYEGNYSIISGVTNRILDQTGFFRRLEHLIYRWNGVEANAWKL-DAELKERTLRG 321          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|219130240|ref|XP_002185277.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403192|gb|EEC43146.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 189.889 bits (481), Expect = 6.288e-56
Identity = 92/170 (54.12%), Postives = 114/170 (67.06%), Query Frame = 0
Query:  171 LFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKIT-KITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHL--SKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCW 337
            + +DF SG+ HW+ DNYGNGKTPV+G +I AFQGHH APWTI  R F NNV+K+     I  MLAI A+ P  P V  F   F   +++SQEFHK SH   S+ P W   LQD GL I+RK H  HH +PFE NYCI++G CN +LD+SGFFR LE+ VY + G+  N W
Sbjct:    2 VIADFGSGVLHWATDNYGNGKTPVMGGIIAAFQGHHSAPWTIAQRGFCNNVYKLCIPFGIVPMLAINAIAP--PDVVFFMATFCVFEIMSQEFHKWSHQLKSETPGWVNWLQDSGLTIARKPHALHHLAPFEGNYCIISGICNPVLDQSGFFRRLERVVYSLNGIESNAW 169          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|298714106|emb|CBJ27287.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 191.045 bits (484), Expect = 1.463e-55
Identity = 91/184 (49.46%), Postives = 116/184 (63.04%), Query Frame = 0
Query:  155 TPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 338
            +P +    AA        +D  SG+FHWSVDNYG+G TPV G VIEAFQGHH +PWTITYR F NNVHKI    +P +  +  ++P    V L    F    ++S EFH+ +H++ PP     LQ  G+ +SRKEHG+HHSSPFE  YCI+TG CN  LD    FRF+E+ VY++ GV P  WK
Sbjct:   25 SPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDGSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVAL-GVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYELNGVEPIAWK 207          
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|255078002|ref|XP_002502581.1| (hypothetical protein MICPUN_58724 [Micromonas commoda] >gi|226517846|gb|ACO63839.1| hypothetical protein MICPUN_58724 [Micromonas commoda])

HSP 1 Score: 194.126 bits (492), Expect = 2.209e-55
Identity = 97/225 (43.11%), Postives = 134/225 (59.56%), Query Frame = 0
Query:  138 LAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKP--PAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANM 360
            L A   V    AG+GG  P     L  +   +   SD  +G+FHWSVDNYG+  TPV+G +I+AFQGHH  PWTIT RQF+NN+H     T+   + ++     +P    F  +F ++ VLSQ+FH  SH+ K   P   V+LQDLG++ISRK HG HH  PFE NYCI++G  N +LD++ FF  +EK V++ TGV P CW + + +F  E       G + N+
Sbjct:  117 LVARGGVGIEMAGDGG-DPAAWASLVGSGLLAYWLSDLGTGVFHWSVDNYGSKATPVMGGIIDAFQGHHKYPWTITKRQFANNIHTTCPATMCVTVPLLLTPGLAPDTCAFMGVFCSMIVLSQQFHAWSHMKKSQLPEIVVKLQDLGVLISRKGHGAHHRPPFEGNYCIVSGWWNPILDDNKFFNKMEKVVFEATGVAPRCWSE-THDFDVEEEAPEGWGKEYNL 339          
The following BLAST results are available for this feature:
BLAST of EWM29378.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111906|gb|EWM29378.1|0.000e+0100.00Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
gi|553185331|ref|XP_005854236.1|0.000e+099.61hypothetical protein NGA_0194500 [Nannochloropsis ... [more]
gi|1210524703|dbj|GAX16603.1|1.282e-6141.38ubiquitin-conjugating enzyme E2 variant [Fistulife... [more]
gi|873232276|emb|CEM05794.1|1.383e-6038.51unnamed protein product [Vitrella brassicaformis C... [more]
gi|397568714|gb|EJK46293.1|2.488e-6043.44hypothetical protein THAOC_35043 [Thalassiosira oc... [more]
gi|223995549|ref|XP_002287448.1|6.918e-5953.18predicted protein, partial [Thalassiosira pseudona... [more]
gi|1210511832|dbj|GAX29072.1|9.310e-5846.99ubiquitin-conjugating enzyme E2 variant [Fistulife... [more]
gi|219130240|ref|XP_002185277.1|6.288e-5654.12predicted protein, partial [Phaeodactylum tricornu... [more]
gi|298714106|emb|CBJ27287.1|1.463e-5549.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|255078002|ref|XP_002502581.1|2.209e-5543.11hypothetical protein MICPUN_58724 [Micromonas comm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1310rna1310Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications