EWM29378.1, cds1308 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|585111906|gb|EWM29378.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 760.37 bits (1962), Expect = 0.000e+0 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0 Query: 1 MKPYPIVTIATLAIGAVAVHGFVIPAPSSRRISHDPWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366 MKPYPIVTIATLAIGAVAVHGFVIPAPSSRRISHDPWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME Sbjct: 1 MKPYPIVTIATLAIGAVAVHGFVIPAPSSRRISHDPWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|553185331|ref|XP_005854236.1| (hypothetical protein NGA_0194500 [Nannochloropsis gaditana CCMP526] >gi|422294827|gb|EKU22127.1| hypothetical protein NGA_0194500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0 Identity = 253/254 (99.61%), Postives = 254/254 (100.00%), Query Frame = 0 Query: 113 MVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366 MVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLA+VALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME Sbjct: 1 MVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAVVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 254
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|1210524703|dbj|GAX16603.1| (ubiquitin-conjugating enzyme E2 variant [Fistulifera solaris]) HSP 1 Score: 209.92 bits (533), Expect = 1.282e-61 Identity = 132/319 (41.38%), Postives = 178/319 (55.80%), Query Frame = 0 Query: 45 YVDVLQSTTLPS--DTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIV----EKKSKRRGPPPPVMVADGDVLESS----WIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHL--SKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVG 351 +V V T PS P S S T+ L + +AS V+++ S ++D V + +R P++V DGD LE+ + S + H + AM + + N + P L M + T A VL +D SGI HWSVDNYGNG+TP++G +I AFQGHH APWTIT R F NNV+K+ A + ++ L + P LFAT F L++LSQEFHK SH+ S+ P W RLQ LGL +SRK HG HH +P+E NY I++G NR+LD++GFFR LE +Y GV N WK SE + L G Sbjct: 12 FVSVQSFTVAPSVHRRPSTFSLSSATS-LNHQQEIQEASGVTSKK----SWKDDGFVFGLSDSGLQRPKGKAPIIVVDGDSLETKPYQVVLVLSTLLGHAAFFVCAMMGIWAQQ--NYQLGPAALQMTSLTLASWVL-ADLGSGILHWSVDNYGNGRTPIMGGIIAAFQGHHSAPWTITQRGFCNNVYKLCLPFGLAPVTLLTLLGAGPQTILFATTFCVLEILSQEFHKWSHMLGSETPGWVNRLQSLGLTVSRKTHGLHHLAPYEGNYSIISGVTNRVLDQTGFFRRLEHLIYRWNGVEANAWKL-DSELKERTLRG 321
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|873232276|emb|CEM05794.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 207.994 bits (528), Expect = 1.383e-60 Identity = 114/296 (38.51%), Postives = 158/296 (53.38%), Query Frame = 0 Query: 43 LRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRIVEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 338 +RY D +++ + P P V + VS E+ P + + R + K P ++ +GD + + LVT + + A + +++ F++LF D FSG+FHW+VDNYGN TPV G+VIE FQGHH PWTITYR F+NNV+KI + M L + P V +F T+F QV++QEFHK SH++KPP RLQ +GL++ RKEHG HHS PFE +Y IL G N +LD S FR +E+A+Y G MPN WK Sbjct: 69 IRYTDYVETASFP-----------------PESSVLSTAEVSEESAAPAAPKRRRPLSKD--------PQLIVEGDSTQVT-------PYQQLVTYGTLALALAAIAQALVSDASNPALMSLMVPFALLFGDLFSGVFHWAVDNYGNKNTPVFGSVIEGFQGHHKYPWTITYRPFANNVYKICYGVLLIMATTFILQ-APPAVRVFMTVFGLSQVMAQEFHKYSHMTKPPIIVQRLQGMGLMLPRKEHGLHHSEPFEGHYSILFGWFNPLLDHSQVFRLMERAIYKWNGHMPNSWK 331
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|397568714|gb|EJK46293.1| (hypothetical protein THAOC_35043 [Thalassiosira oceanica]) HSP 1 Score: 206.838 bits (525), Expect = 2.488e-60 Identity = 106/244 (43.44%), Postives = 144/244 (59.02%), Query Frame = 0 Query: 113 MVADGDVLESSWIHRSYVATHYLV-TLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKIT-KITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKP--PAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGR 352 +V +GD LE++ V++ + V A + + + G AT S + +DF SGIFHWSVDNYGNG+TP++G +I AFQGHH APWTI YR F NNV+K+ IP + AI L + + LF T F ++++SQE HK SH +K P+ LQDLG+ I R H +HH++PFE NYCI++G CN LD SGFFR++E VY + GV N WK E + L G+ Sbjct: 91 VVVEGDSLETTPFQVGLVSSTFAVQAFFAANAIHTLFEQTNGDVGQTAAFSVATVVASWVAADFGSGIFHWSVDNYGNGRTPIMGNIIAAFQGHHSAPWTIAYRGFCNNVYKLCIPFGIPTVAAINYLSGDNSMAALFFTFFCWIEIMSQELHKWSHQTKAEVPSIVNVLQDLGITIGRVPHAKHHTAPFEGNYCIVSGLCNETLDRSGFFRWMEHTVYKINGVESNAWKL-DPELKERTLSGK 333
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|223995549|ref|XP_002287448.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976564|gb|EED94891.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 197.593 bits (501), Expect = 6.918e-59 Identity = 92/173 (53.18%), Postives = 124/173 (71.68%), Query Frame = 0 Query: 169 SVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKIT-KITIPAMLAIVALH-PSSPLVTLFATLFFNLQVLSQEFHKLSHLSKP--PAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCW 337 S + +DF SG+FHWSVDNYGNG+TPV+G++I AFQGHH APWTITYR F NNV K+ +P + AI + P + +VTLF T F ++++SQE HK SH++K PA+ LQ LG+ I+R H QHH +P++ NYCI++G CN LD+SGFFR++E VY++ GV N W Sbjct: 2 SWVLADFGSGVFHWSVDNYGNGRTPVMGSIIAAFQGHHSAPWTITYRGFCNNVWKLCIPFGLPTVAAISYIAGPENSMVTLFFTFFCAIEIMSQELHKWSHMTKKETPAFVNTLQALGVTIARVPHAQHHLAPYDGNYCIVSGLCNETLDKSGFFRWMEHKVYELNGVESNAW 174
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|1210511832|dbj|GAX29072.1| (ubiquitin-conjugating enzyme E2 variant [Fistulifera solaris]) HSP 1 Score: 199.904 bits (507), Expect = 9.310e-58 Identity = 117/249 (46.99%), Postives = 147/249 (59.04%), Query Frame = 0 Query: 114 VADGDVLESSWIHRSYVATHYLVTLAA-----MQQVASTYAG-NGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHP---SSPLVTLFATLFFNLQVLSQEFHKLSHL--SKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVG 351 V DGD LE+ + Y L TL M + +A N + P L + T A VL +D SGI HWSVDNYGNG+TP++G +I AFQGHH APWTIT R F NNV+ K+ +P LA V L + P LFAT F L++LSQEFHK SH+ S+ P W RLQ LGL +SRK HG HH +P+E NY I++G NR+LD++GFFR LE +Y GV N WK +E + L G Sbjct: 82 VVDGDSLET----KPYQVVLVLSTLFGHAAFFMNAMMGIWAQQNYQLGPAALQTTSLTLASWVL-ADLGSGILHWSVDNYGNGRTPIMGGIIAAFQGHHSAPWTITQRGFCNNVY---KLCLPFGLAPVTLLTWLGAGPQTILFATTFCVLEILSQEFHKWSHMLGSETPGWVNRLQALGLTVSRKTHGLHHLAPYEGNYSIISGVTNRILDQTGFFRRLEHLIYRWNGVEANAWKL-DAELKERTLRG 321
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|219130240|ref|XP_002185277.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403192|gb|EEC43146.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 189.889 bits (481), Expect = 6.288e-56 Identity = 92/170 (54.12%), Postives = 114/170 (67.06%), Query Frame = 0 Query: 171 LFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKIT-KITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHL--SKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCW 337 + +DF SG+ HW+ DNYGNGKTPV+G +I AFQGHH APWTI R F NNV+K+ I MLAI A+ P P V F F +++SQEFHK SH S+ P W LQD GL I+RK H HH +PFE NYCI++G CN +LD+SGFFR LE+ VY + G+ N W Sbjct: 2 VIADFGSGVLHWATDNYGNGKTPVMGGIIAAFQGHHSAPWTIAQRGFCNNVYKLCIPFGIVPMLAINAIAP--PDVVFFMATFCVFEIMSQEFHKWSHQLKSETPGWVNWLQDSGLTIARKPHALHHLAPFEGNYCIISGICNPVLDQSGFFRRLERVVYSLNGIESNAW 169
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|298714106|emb|CBJ27287.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 191.045 bits (484), Expect = 1.463e-55 Identity = 91/184 (49.46%), Postives = 116/184 (63.04%), Query Frame = 0 Query: 155 TPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWK 338 +P + AA +D SG+FHWSVDNYG+G TPV G VIEAFQGHH +PWTITYR F NNVHKI +P + + ++P V L F ++S EFH+ +H++ PP LQ G+ +SRKEHG+HHSSPFE YCI+TG CN LD FRF+E+ VY++ GV P WK Sbjct: 25 SPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDGSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVAL-GVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYELNGVEPIAWK 207
BLAST of EWM29378.1 vs. NCBI_GenBank
Match: gi|255078002|ref|XP_002502581.1| (hypothetical protein MICPUN_58724 [Micromonas commoda] >gi|226517846|gb|ACO63839.1| hypothetical protein MICPUN_58724 [Micromonas commoda]) HSP 1 Score: 194.126 bits (492), Expect = 2.209e-55 Identity = 97/225 (43.11%), Postives = 134/225 (59.56%), Query Frame = 0 Query: 138 LAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKP--PAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANM 360 L A V AG+GG P L + + SD +G+FHWSVDNYG+ TPV+G +I+AFQGHH PWTIT RQF+NN+H T+ + ++ +P F +F ++ VLSQ+FH SH+ K P V+LQDLG++ISRK HG HH PFE NYCI++G N +LD++ FF +EK V++ TGV P CW + + +F E G + N+ Sbjct: 117 LVARGGVGIEMAGDGG-DPAAWASLVGSGLLAYWLSDLGTGVFHWSVDNYGSKATPVMGGIIDAFQGHHKYPWTITKRQFANNIHTTCPATMCVTVPLLLTPGLAPDTCAFMGVFCSMIVLSQQFHAWSHMKKSQLPEIVVKLQDLGVLISRKGHGAHHRPPFEGNYCIVSGWWNPILDDNKFFNKMEKVVFEATGVAPRCWSE-THDFDVEEEAPEGWGKEYNL 339 The following BLAST results are available for this feature:
BLAST of EWM29378.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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